NbLib0102: dbEST salmon whole eye unnormalized (ssaeye01)

Last GRIST date: 10/16/2008

This library includes the following UniGene libs: Lib.15452.
View this library: Full List | Indexed by Chromosome | Indexed by GO Term | Tab Delimited Understanding NEIBank Data
[**] This UniGene associated with another RefSeq or GenBank in this table. Click to display. View All Data | << Previous Page | Next Page >>
Group#Description Entrez Gene IdGenBankUniGene (Build Ssa #20) ChromosomeNum. Clones
1
  • Transcribed locus, moderately similar to NP_001070117.1 hypothetical protein LOC767711 [Danio rerio]
    		•     31490  
    		   324
    2
  • Danio rerio crystallin, gamma M2a (crygm2a), mRNA
    		• 553177
    		NM_001018121       194
    3
  • S.salar mRNA for beta-globin
  • Transcribed locus, strongly similar to NP_001118022.1 alpha-globin I [Oncorhynchus mykiss]
  • Beta-globin
  • Beta globin
    		• 100136576
    		X69958   30915  
    30934  
    423  
    		   108
    4
  • Salmo salar retinal rod opsin mRNA, complete cds
  • Rod opsin
    		• 100136370
    		AF201470   6059  
    		   58
    5
  • Transcribed locus, strongly similar to NP_990506.2 crystallin, beta B2 [Gallus gallus]
    		•     793  
    		   56
    6
  • Transcribed locus, strongly similar to NP_001018135.1 crystallin, beta A4 [Danio rerio]
    		•     555  
    		   49
    7
  • Transcribed locus, strongly similar to XP_418029.1 PREDICTED: hypothetical protein [Gallus gallus]
  • Transcribed locus, weakly similar to NP_001119871.1 similar to vanilloid receptor-like protein [Danio rerio]
  • Transcribed locus
    		•     30913  
    31081  
    37017 [**] 
    		   37
    8
  • Transcribed locus, strongly similar to NP_775338.2 crystallin, beta B1 [Danio rerio]
    		•     374  
    		   33
    9
  • Tetraodon nigroviridis full-length cDNA
    		•   CR698046       27
    10
  • Transcribed locus, moderately similar to NP_001018631.1 crystallin, gamma M7 [Danio rerio]
    		•     1541  
    		   27
    11
  • Oncorhynchus tshawytscha microsatellite OtsG401 sequence
    		•   AF393195       22
    12
  • Transcribed locus, moderately similar to NP_001012390.1 crystallin, gamma S3 [Danio rerio]
    		•     8249  
    		   21
    13
  • Transcribed locus, weakly similar to NP_658906.1 crystallin, gamma B [Mus musculus]
  • Transcribed locus, weakly similar to NP_001012390.1 crystallin, gamma S3 [Danio rerio]
    		•     37171  
    8207  
    		   20
    14
  • Transcribed locus, moderately similar to NP_001018630.1 crystallin, gamma M6 [Danio rerio]
  • Transcribed locus, moderately similar to NP_001018631.1 crystallin, gamma M7 [Danio rerio]
    		•     37537  
    797  
    		   18
    15
  • Transcribed locus, moderately similar to NP_001002405.1 arrestin 3, retinal (X-arrestin), like [Danio rerio]
    		•     7382  
    		   18
    16
  • Transcribed locus, moderately similar to NP_001003428.1 crystallin, gamma N2 [Danio rerio]
    		•     8218  
    		   18
    17
  • 81% protein similarity to: gamma-crystallin M2-2 - Petenia splendida x Cichlasoma synspilum
    		•         17
    18
  • 84% protein similarity to: beta A1-2-crystallin [Danio rerio]
    		•         15
    19
  • Transcribed locus
    		•     7820  
    		   13
    20
  • Salmo salar LWS opsin mRNA, complete cds
    		• 100136940
    		AY214131       12
    21
  • Transcribed locus, strongly similar to NP_775329.1 creatine kinase, brain [Danio rerio]
    		•     7763  
    		   12
    22
  • Transcribed locus, moderately similar to NP_001002584.1 hypothetical protein LOC436857 [Danio rerio]
    		•     31506  
    		   11
    23
  • 78% protein similarity to: gamma-crystallin M2-3 - Petenia splendida x Cichlasoma synspilum
    		•         11
    24
  • 40% protein similarity to: C-type lectin 2 [Anguilla japonica]
    		•         11
    25
  • 90% protein similarity to: intestinal fatty acid-binding protein [Paralichthys olivaceus]
    		•         11
    26
  • hsc71=major heat-shock-protein-like gene [rainbow trout, testes, Genomic, 6825 nt]
    		•   S85730       10
    27
  • Salmo salar mRNA for glyceraldehyde-3-phosphate dehydrogenase (gapdh gene)
  • Glyceraldehyde-3-phosphate dehydrogenase
    		• 100136417
    		AM230811   688  
    		   10
    28
  • Oncorhynchus mykiss elongation factor EF1 alpha mRNA, complete cds
  • Transcribed locus, strongly similar to NP_001035074.1 hypothetical protein LOC664756 [Danio rerio]
    		• 100136004
    		AF498320   30552 [**] 
    		   9
    29
  • Transcribed locus, moderately similar to NP_001004682.1 fatty acid binding protein 11 [Danio rerio]
    		•     1256  
    		   9
    30
  • Transcribed locus, strongly similar to NP_989562.2 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 [Gallus gallus]
  • Transcribed locus, moderately similar to NP_989562.2 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 [Gallus gallus]
    		•     38290  
    658  
    		   9
    31
  • 79% protein similarity to: Crygmx protein [Danio rerio]
    		•         9
    32
  • 85% protein similarity to: crystallin, gamma N1 [Danio rerio]
    		•         9
    33
  • 80% protein similarity to: gamma M7 crystallin [Dissostichus mawsoni]
    		•         9
    34
  • Oncorhynchus masou formosanus ribosomal protein L18 (RPL18) mRNA, complete cds
  • Hypothetical protein LOC100136574
    		•   EU325862   23669  
    		   8
    35
  • Transcribed locus, moderately similar to NP_001018631.1 crystallin, gamma M7 [Danio rerio]
    		•     7703  
    		   8
    36
  • 86% protein similarity to: beta A1 crystallin [Dissostichus mawsoni]
    		•         8
    37
  • Salmo salar clone BA1 beta-2 microglobulin (B2m) mRNA, complete cds
  • Beta-2 microglobulin
    		• 100136933
    		AF180478   30922  
    		   7
    38
  • Salmo salar MHC class I (UBA) mRNA, UBA*0601 allele, partial cds
  • MHC class I antigen (Sasa-UBA) mRNA, Sasa-UBA*1402 allele
    		•   AF504013   32712  
    		   7
    39
  • Oncorhynchus mykiss mRNA for alpha 3 type I collagen, partial cds
  • Transcribed locus, moderately similar to XP_423116.2 PREDICTED: similar to Collagen alpha-1(I) chain, partial [Gallus gallus]
    		• 100135785
    		AB008374   30921  
    		   7
    40
  • Transcribed locus
    		•     8210  
    		   7
    41
  • Transcribed locus, strongly similar to NP_033121.1 ribosomal protein S5 [Mus musculus]
    		•     30976  
    		   7
    42
  • Transcribed locus, moderately similar to NP_035420.2 ribosomal protein L6 [Mus musculus]
    		•     7553 [**] 
    		   7
    43
  • 96% protein similarity to: ribosomal protein L9 [Oncorhynchus masou formosanus]
    		•         7
    44
  • 82% protein similarity to: recoverin [Danio rerio]
    		•         7
    45
  • 88% protein similarity to: purpurin [Carassius auratus]
    		•         7
    46
  • 92% protein similarity to: cone transducin alpha subunit [Cyprinus carpio]
    		•         7
    47
  • Unidentified CK876389
    		•         7
    48
  • Transcribed locus, strongly similar to XP_422423.1 PREDICTED: similar to ribosomal protein S8 [Gallus gallus]
    		•     12441  
    		   6
    49
  • Transcribed locus, strongly similar to NP_082319.1 hypothetical protein LOC52846 [Mus musculus]
    		•     528  
    		   6
    50
  • 89% protein similarity to: guanylate cyclase activating protein 1 [Oryzias latipes] (Similar to EST: CK876741)
  • Transcribed locus, moderately similar to NP_571945.1 guanylate cyclase activator 1A [Danio rerio]
    		•   CK876741   1539  
    		   6
    51
  • 70% protein similarity to: g-crystallin [Clarias fuscus]
    		•         6
    52
  • 75% protein similarity to: arrestin [Oryzias latipes]
    		•         6
    53
  • Unidentified CO469769
    		•         6
    54
  • Oncorhynchus masou formosanus ribosomal protein L6 (RPL6) mRNA, complete cds
  • Transcribed locus, moderately similar to NP_035420.2 ribosomal protein L6 [Mus musculus]
    		•   EU325867   7553 [**] 
    		   5
    55
  • Salmo salar heat shock protein hsp90 beta (hsp90 beta) mRNA, complete cds
  • Heat shock protein hsp90 beta
    		• 100136360
    		AF135117   157  
    		   5
    56
  • ferritin heavy subunit [Salmo salar=Atlantic salmon, liver, mRNA, 799 nt]
  • Ferritin heavy subunit
    		• 100136564
    		S77332   418  
    		   5
    57
  • Salmo salar fast myotomal muscle actin mRNA, complete cds
  • Fast myotomal muscle actin
  • Transcribed locus, strongly similar to NP_062085.1 actin, alpha 1, skeletal muscle [Rattus norvegicus]
    		• 100136374
    		AF304406   23662  
    31012  
    		   5
    58
  • Salmo salar elongation factor 1 alpha mRNA, complete cds
  • Transcribed locus, strongly similar to NP_001035074.1 hypothetical protein LOC664756 [Danio rerio]
    		• 100136525
    		AF321836   30552 [**] 
    		   5
    59
  • Transcribed locus, weakly similar to NP_035016.1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4 [Mus musculus]
    		•     7675  
    		   5
    60
  • Transcribed locus
    		•     6152  
    		   5
    61
  • Transcribed locus, moderately similar to NP_775370.1 eukaryotic translation elongation factor 1 gamma [Danio rerio]
    		•     624  
    		   5
    62
  • Transcribed locus, strongly similar to NP_001117971.1 cystatin B [Oncorhynchus mykiss]
    		•     4616  
    		   5
    63
  • 83% protein similarity to: basigin [Danio rerio]
    		•         5
    64
  • 84% protein similarity to: beta B3 crystallin [Dissostichus mawsoni]
    		•         5
    65
  • Unidentified CO470490
    		•         5
    66
  • 91% protein similarity to: novel protein [Danio rerio]
    		•         5
    67
  • Unidentified CK877061
    		•         5
    68
  • Unidentified CK876446
    		•         5
    69
  • Unidentified CK876396
    		•         5
    70
  • 76% protein similarity to: crystallin, beta B2 [Gallus gallus]
    		•         5
    71
  • 68% protein similarity to: cone transducin alpha subunit [Cyprinus carpio]
    		•         5
    72
  • 57% protein similarity to: prostaglandin D2 synthase [Danio rerio]
    		•         5
    73
  • 54% protein similarity to: barrier-to-autointegration factor [Danio rerio]
    		•         5
    74
  • Oncorhynchus masou formosanus ribosomal protein L19 (RPL19) mRNA, complete cds
    		•   EU325871       4
    75
  • Oncorhynchus keta clone Oke.RH2 genomic sequence
    		•   DQ025616       4
    76
  • Oncorhynchus mykiss mRNA for type II keratin E3 (E3 gene)
  • Transcribed locus, strongly similar to XP_001333203.1 PREDICTED: similar to Krt4 protein [Danio rerio]
    		• 100170206
    		AJ315933   31895  
    		   4
    77
  • Oncorhynchus masou formosanus ribosomal protein L7a (RPL7a) mRNA, complete cds
    		•   EU325864       4
    78
  • Oncorhynchus mykiss ribosomal protein L8 mRNA, partial cds
    		• 100136284
    		AY957563       4
    79
  • Salmo salar ribosomal protein L18a mRNA, complete cds
  • Ribosomal protein L18a
    		• 100136354
    		AF045188   807  
    		   4
    80
  • Salmo salar mRNA for myosin regulatory light chain 2 (mlc-2 gene), splice variant a
  • Myosin regulatory light chain 2
    		• 100137048
    		AJ557151   87  
    		   4
    81
  • Salvelinus alpinus DNA, Fok-211 (SA) FokI SINE repeat sequence
    		•   AB012889       4
    82
  • Salmo salar myotomal muscle troponin-I isoform 2 mRNA, complete cds
  • Troponin I
    		• 100136570
    		U84393   464  
    		   4
    83
  • Oncorhynchus mykiss mRNA for matrix metalloproteinase-2, complete cds
    		• 100135793
    		AB021698       4
    84
  • Oncorhynchus mykiss clone B32 VHSV-induced protein mRNA, complete cds
    		• 100136000
    		AF483536       4
    85
  • Oncorhynchus masou formosanus ribosomal protein S3a (rpS3a) mRNA, complete cds
  • Transcribed locus, strongly similar to NP_058849.1 ribosomal protein S3a [Rattus norvegicus]
    		•   EU325875   830  
    		   4
    86
  • Transcribed locus, moderately similar to NP_000260.1 non-metastatic cells 1, protein (NM23A) expressed in isoform b [Homo sapiens]
    		•     31008  
    31574  
    		   4
    87
  • Transcribed locus
    		•     8245  
    		   4
    88
  • Transcribed locus, moderately similar to NP_919357.2 prothymosin, alpha [Danio rerio]
    		•     31370  
    31420  
    		   4
    89
  • Transcribed locus, moderately similar to XP_001337030.1 PREDICTED: guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2 [Danio rerio]
    		•     908  
    		   4
    90
  • Transcribed locus, moderately similar to NP_001002657.1 hypothetical protein LOC436930 [Danio rerio]
    		•     30966  
    		   4
    91
  • Transcribed locus, strongly similar to NP_998272.1 ribosomal protein L4 [Danio rerio]
    		•     1289  
    		   4
    92
  • Transcribed locus, strongly similar to NP_035426.1 ribosomal protein S18 [Mus musculus]
    		•     31017  
    		   4
    93
  • Transcribed locus, weakly similar to NP_571779.1 major histocompatibility complex class I UDA [Danio rerio]
  • Transcribed locus
    		•     31141  
    37073  
    		   4
    94
  • Transcribed locus, moderately similar to NP_998442.1 acidic (leucine-rich) nuclear phosphoprotein 32 family, member E [Danio rerio]
  • Transcribed locus
    		•     34412  
    8221  
    		   4
    95
  • Transcribed locus
    		•     801  
    		   4
    96
  • 93% protein similarity to: type I keratin E7 [Oncorhynchus mykiss] (Similar to EST: CB502767)
  • Transcribed locus, strongly similar to NP_001117825.1 type I keratin E7 [Oncorhynchus mykiss]
    		•   CB502767   32243  
    		   4
    97
  • 89% protein similarity to: gamma S1 crystallin [Dissostichus mawsoni] (Similar to EST: CK876568)
  • Transcribed locus, weakly similar to NP_005201.2 crystallin, gamma B [Homo sapiens]
    		•   CK876568   8250 [**] 
    		   4
    98
  • 91% protein similarity to: ribosomal protein S4 [Solea senegalensis]
    		•         4
    99
  • Unidentified CK876123
    		•         4
    100
  • 82% protein similarity to: smooth muscle cell-specific protein SM22 alpha [Epinephelus coioides]
    		•         4


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