NbLib0061: NEI rat whole eye combined (jd,je,kr,ks)

Last GRIST date: 10/08/2008

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Group#	Description	Entrez Gene Id	GenBank	UniGene (Build Rn #176)	Chromosomal Pos. (BLAT)	Chromosome (UniGene)	Num. Clones
1	Rattus norvegicus crystallin, alpha A (Cryaa), mRNA Crystallin, alpha A	24273	NM_012534	127769			99
2	Rattus norvegicus crystallin, gamma B (Crygb), mRNA Crystallin, gamma B Crystallin, gamma C	301468	NM_001109875	202960 81172	chr9:63720589	9q32 9q32-q33	71
3	Rattus norvegicus crystallin, alpha B (Cryab), mRNA Crystallin, alpha B	25420	NM_012935	98208	chr8:54111201	8q23	49
4	Rattus norvegicus crystallin, gamma D (Crygd), mRNA Crystallin, gamma D	24278	NM_033095	64655	chr9:63711065	9q32	40
5	Rattus norvegicus rhodopsin (Rho), mRNA Rhodopsin	24717	NM_033441	92530 [**]	chr4:152057783	4q42	31
6	PREDICTED: Rattus norvegicus crystallin, beta A1 (Cryba1), mRNA Crystallin, beta A1	25583	XM_001080813	20326	chr10:63758933	10q24-q25	29
7	Rattus norvegicus keratin complex 1, acidic, gene 12 (Krt1-12), mRNA Keratin 12 (Meesmann corneal dystrophy)	360625	NM_001008761	94852	chr10:88324628	10q32.1	19
8	Rattus norvegicus crystallin, beta A4 (Cryba4), mRNA Crystallin, beta A4	64348	NM_031689	10802			18
9	Rattus norvegicus crystallin, beta A2 (Cryba2), mRNA Crystallin, beta A2	286925	NM_173140	204241	chr9:74222859	9q33	17
10	Rattus norvegicus crystallin, gamma S (predicted) (Crygs_predicted), mRNA Crystallin, gamma S	689897	NM_001109553	198271	chr11:80437493	11q23	14
11	Rattus norvegicus guanine nucleotide binding protein, alpha transducing 1 (predicted) (Gnat1_predicted), mRNA Guanine nucleotide binding protein, alpha transducing 1	363143	NM_001108780	8781	chr8:112927929	8q32	13
12	Rattus norvegicus crystallin, beta B3 (Crybb3), mRNA Crystallin, beta B3	64349	NM_031690	19693			13
13	Rattus norvegicus keratin complex 2, basic, gene 5 (Krt2-5), mRNA Keratin 77 Transcribed locus, strongly similar to NP_081287.1 keratin 5 [Mus musculus]	369017	NM_183333	129725 217148	chr7:140373316	7	12
14	Rattus norvegicus crystallin, beta B1 (Crybb1), mRNA Crystallin, beta B1	25421	NM_012936	10602			12
15	Rattus norvegicus thymosin, beta 4 (Tmsb4x), mRNA Thymosin, beta 4, X chromosome	81814	NM_031136	212208	chr1:187114874 chr5:59581839	6	10
16	Rattus norvegicus aldehyde dehydrogenase family 3, member A1 (Aldh3a1), mRNA Aldehyde dehydrogenase 3 family, member A1	25375	NM_031972	105627	chr10:47371062	10q22	9
17	PREDICTED: Rattus norvegicus similar to Retinal rod rhodopsin-sensitive cGMP 3,5-cyclic phosphodiesterase gamma-subunit (GMP-PDE gamma), transcript variant 2 (LOC688297), mRNA	688297	XM_001081805				9
18	Rattus norvegicus actin, beta (Actb), mRNA Actin, beta	81822	NM_031144	94978	chr12:12049937	12p11	9
19	Rattus norvegicus eukaryotic translation elongation factor 1 alpha 1 (Eef1a1), mRNA Eukaryotic translation elongation factor 1 alpha 1 Transcribed locus, strongly similar to NP_989488.2 eukaryotic translation elongation factor 1 alpha 1 [Gallus gallus]	171361	NM_175838	144660 195004	chr3:145106533 chr8:83465030 chrX:156022827	8q31 X	8
20	Rattus norvegicus crystallin, beta B2 (Crybb2), mRNA Crystallin, beta B2	25422	NM_012937	10350	chr5:34156871		8
21	Rhodopsin			92530 [**]	chr4:152065555	4q42	8
22	Rattus norvegicus stearoyl-Coenzyme A desaturase 2 (Scd2), mRNA Stearoyl-Coenzyme A desaturase 2	83792	NM_031841	83595	chr1:249369654	1q54	6
23	Rattus norvegicus ribosomal protein S2 (Rps2), mRNA Transcribed locus, strongly similar to NP_998444.1 ribosomal protein S2 [Danio rerio] Transcribed locus, strongly similar to NP_114026.3 ribosomal protein S2 [Rattus norvegicus] Ribosomal protein S2 Transcribed locus, strongly similar to NP_114026.3 ribosomal protein S2 [Rattus norvegicus]	83789	NM_031838	156589 203136 2115 220062	chr10:13975493	9 3 10q12 10q12	6
24	Rattus norvegicus retinal degeneration, slow (Rds), mRNA Peripherin 2	25534	NM_013021	48882	chr1:137553304 chr15:63208286 chr3:20159606	9q12	6
25	Rattus norvegicus synaptosomal-associated protein 25 (Snap25), mRNA Synaptosomal-associated protein 25	25012	NM_030991	107689	chr3:124893600	3q36	6
26	Rattus norvegicus cysteine and glycine-rich protein 1 (Csrp1), mRNA Cysteine and glycine-rich protein 1	29276	NM_017148	108075	chr13:48775473	13q13	6
27	Rattus norvegicus tubulin, beta 2c (Tubb2c), mRNA Tubulin, beta 2c	296554	NM_199094	110562	chr3:3387265	3p13	5
28	Rattus norvegicus glutamate-ammonia ligase (glutamine synthetase) domain containing 1 (Gluld1), mRNA Glutamate-ammonia ligase (glutamine synthetase) domain containing 1	316304	NM_181383	38685	chr9:29844176	9q21	5
29	Rattus norvegicus heat shock protein 1, alpha (Hspca), mRNA Heat shock protein 90, alpha (cytosolic), class A member 1 Similar to heat shock protein 1, alpha	299331	NM_175761	119867 201327	chr5:145206543	6q32 4q42	5
30	Rattus norvegicus fatty acid binding protein 5, epidermal (Fabp5), mRNA Similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 Similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 Fatty acid binding protein 5, epidermal	140868	NM_145878	159017 195861 98269	chr6:111749896	6q31 6q31 Un	5
31	Rattus norvegicus glutamate-ammonia ligase (glutamine synthase) (Glul), mRNA Glutamate-ammonia ligase (glutamine synthetase)	24957	NM_017073	2204		13q22	4
32	Rattus norvegicus ribosomal protein S6 (Rps6), mRNA Similar to 40S ribosomal protein S6 Ribosomal protein S6	29304	NM_017160	196512 34341	chr5:106167049	6q23 5	4
33	Rattus norvegicus phosducin (Pdc), mRNA Phosducin	25343	NM_012872	9739	chr13:64629568	13q21	4
34	Rattus norvegicus RBSC-skeletrophin/dystrophin-like polypeptide (2210008I1k) mRNA, 2210008I1k-4E2 allele, complete cds		AY675183		chr1:208429986		4
35	PREDICTED: Rattus norvegicus similar to Guanine nucleotide-binding protein G(T) gamma-T1 subunit precursor (Transducin gamma chain), transcript variant 2 (LOC680149), mRNA Similar to Guanine nucleotide-binding protein G(T) gamma-T1 subunit precursor (Transducin gamma chain)	680149	XM_001054660	20355	chr4:28831240	4q13	4
36	Rattus norvegicus UNC-119 homolog (C. elegans) (Unc119), mRNA UNC-119 homolog (C. elegans)	29402	NM_017188	1609	chr10:64286955	10q25	4
37	PREDICTED: Rattus norvegicus similar to AOF2 protein (predicted) (RGD1562975_predicted), mRNA	500569	XM_001069483		chr5:155307586		4
38	Rattus norvegicus MT-protocadherin (Pcdh21), mRNA Protocadherin 21	93662	NM_053572	19780	chr16:13285167	16p14	4
39	Rattus norvegicus prolyl 4-hydroxylase, beta polypeptide (P4hb), mRNA Prolyl 4-hydroxylase, beta polypeptide	25506	NM_012998	4234	chr10:109950430	10q32.3	4
40	Rattus norvegicus retinol dehydrogenase 11 (Rdh11), mRNA Retinol dehydrogenase 11	362757	NM_001012193	24910	chr6:101946836	6q24	4
41	Rattus norvegicus ribophorin I (Rpn1), mRNA Ribophorin I	25596	NM_013067	4224	chr4_random:976925	4	4
42	Rattus norvegicus insulin-like growth factor binding protein 5 mRNA, 3' UTR Insulin-like growth factor binding protein 5	25285	AF139830	1593	chr9:72001152	9q33	4
43	Rattus norvegicus ribosomal protein L23 (Rpl23), mRNA Ribosomal protein L23	29282	NM_001007599	103172	chr10:86527583 chr9:47222387	10q31	4
44	Rattus norvegicus ribosomal protein L18 (Rpl18), mRNA Similar to 60S ribosomal protein L18 Ribosomal protein L18	81766	NM_031102	108748 484	chr1:96188336	18q12.1 1q22	4
45	Rattus norvegicus galectin-related inter-fiber protein (Grifin), mRNA Galectin-related inter-fiber protein	117130	NM_057187	26894	chr12:14547738	12q11	4
46	Rattus norvegicus aldolase A (Aldoa), mRNA Aldolase A, fructose-bisphosphate Transcribed locus, strongly similar to NP_036627.1 aldolase A, fructose-bisphosphate [Rattus norvegicus]	24189	NM_012495	1774 178420	chr1:185971033	1q36 18	4
47	Rattus norvegicus enolase 1, alpha (Eno1), transcript variant 1, mRNA Enolase 1, alpha non-neuron	24333	NM_012554	4236	chr3:55201365 chr6:127304433 chrX:41099242	5q36	4
48	Rattus norvegicus transferrin (Tf), mRNA Transferrin	24825	NM_001013110	91296	chr8:108231158	8q32	3
49	Rattus norvegicus reelin (Reln), mRNA Reelin	24718	NM_080394	98353	chr4:8608862	4q11.2	3
50	Rattus norvegicus lactate dehydrogenase A (Ldha), mRNA Lactate dehydrogenase A Similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M)	24533	NM_017025	107896 154989	chr1:97403085	1q22 8q13	3
51	Rattus norvegicus proteasome (prosome, macropain) 26S subunit, ATPase 2 (Psmc2), mRNA Proteasome (prosome, macropain) 26S subunit, ATPase 2	25581	NM_033236	1202	chr4:8704100	4q11	3
52	Rattus norvegicus type I keratin KA13 (Ka13), mRNA Keratin 13	287699	NM_001004021	102517	chr10:89057005	10q32.1	3
53	Rattus norvegicus neural retina leucine zipper gene (predicted) (Nrl_predicted), mRNA Neural retina leucine zipper gene	290221	NM_001106036	19691	chr15:33650458	15p13	3
54	Rattus norvegicus pyruvate kinase, muscle (Pkm2), mRNA Transcribed locus, strongly similar to NP_872270.1 pyruvate kinase, muscle isoform M1 [Homo sapiens] Pyruvate kinase, muscle	25630	NM_053297	115631 1556	chr16:75638592 chr20:17545187 chr8:63506502	16 8q24	3
55	Rattus norvegicus eukaryotic translation initiation factor 2, subunit 2 (beta) (Eif2s2), mRNA Eukaryotic translation initiation factor 2, subunit 2 (beta)	296302	NM_199380	133804	chr3:145357942	3q42	3
56	Rattus norvegicus ubiquitin-conjugating enzyme E2L 3 (predicted) (Ube2l3_predicted), mRNA Ubiquitin-conjugating enzyme E2L 3	363836	NM_001108847	163186	chr11:85821829	11q23	3
57	Rattus norvegicus ribosomal protein S8 (Rps8), mRNA Ribosomal protein S8	65136	NM_031706	3198	chr10:108310555 chr5:137466739	5q36	3
58	Rattus norvegicus silver homolog (mouse) (predicted) (Silv_predicted), mRNA Silver homolog (mouse)	362818	NM_001108729	162910	chr7:2017458	7q11	3
59	Rattus norvegicus enoyl Coenzyme A hydratase, short chain, 1, mitochondrial (Echs1), nuclear gene encoding mitochondrial protein, mRNA Enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	140547	NM_078623	6847	chr1:199905901	1q41	3
60	Rattus norvegicus acidic ribosomal phosphoprotein P0 (Arbp), mRNA Acidic ribosomal phosphoprotein P0	64205	NM_022402	1079	chr12:42317130 chr8:124254639	12q16	3
61	Rattus norvegicus beta-2 microglobulin (B2m), mRNA Beta-2 microglobulin	24223	NM_012512	1868	chr3:108927911	3q35	3
62	Rattus norvegicus ribosomal protein L41 (Rpl41), mRNA Peroxisomal biogenesis factor 1 Ribosomal protein L41	124440	NM_139083	162727 2833	chr14:112193496 chr7:1839971	4q13 7q11	3
63	Rattus norvegicus tubulin, alpha 1A (Tuba1a), mRNA Tubulin, alpha 1C Tubulin, alpha 1B	64158	NM_022298	154526 99661	chr7:137708478	7q36 7q36	3
64	Rattus norvegicus calnexin (Canx), mRNA Calnexin	29144	NM_172008	1762	chr10:35852272	10	3
65	Rattus norvegicus retinal S-antigen (Sag), mRNA Retinal S-antigen	25539	NM_013023	9856	chr9:86759733	9q35	3
66	Rattus norvegicus eukaryotic translation initiation factor 4, gamma 2 (predicted) (Eif4g2_predicted), mRNA Eukaryotic translation initiation factor 4 gamma, 2 Eukaryotic translation initiation factor 4, gamma 2 (predicted)	361628	NM_001017374	103276 121213	chr1:168837946 chr9:29448790	9 1q33	3
67	Rattus norvegicus glyceraldehyde-3-phosphate dehydrogenase (Gapdh), mRNA Transcribed locus, strongly similar to NP_002037.2 glyceraldehyde-3-phosphate dehydrogenase [Homo sapiens] Glyceraldehyde 3-phosphate dehydrogenase pseudogene	24383	NM_017008	101713 91450	chr5:117080216	4 4q42	3
68	Rattus norvegicus ATPase, Na+/K+ transporting, alpha 3 polypeptide (Atp1a3), mRNA ATPase, Na+/K+ transporting, alpha 3 polypeptide	24213	NM_012506	87329	chr1:80283086	1q21	3
69	Rattus norvegicus CCR4-NOT transcription complex, subunit 7 (predicted) (Cnot7_predicted), mRNA CCR4-NOT transcription complex, subunit 7	306492	NM_001107313	101873	chr16:55118296	16q12.1	3
70	Rattus norvegicus creatine kinase, muscle (Ckm), mRNA Creatine kinase, muscle	24265	NM_012530	10756	chr1:78765522	1q21	3
71	Rattus norvegicus poly(rC) binding protein 3 (Pcbp3), mRNA Poly(rC) binding protein 3	294336	NM_001011945	107537	chr20:12228280	20p12	2
72	Rattus norvegicus EGF-containing fibulin-like extracellular matrix protein 2 (Efemp2), mRNA EGF-containing fibulin-like extracellular matrix protein 2	293677	NM_001005907	16151	chr1:208125313	1q43	2
73	Rattus norvegicus surfeit 4 (Surf4), mRNA Surfeit gene 4 (predicted)	619346	NM_001033868	107863	chr3:5819178	3p12	2
74	Rattus norvegicus transmembrane protein 24 (Tmem24), mRNA Transmembrane protein 24	300666	NM_001011996	57410	chr8:47298538	8q22	2
75	Rattus norvegicus calpain 1 (Capn1), mRNA Calpain 1	29153	NM_019152	6037	chr1:208620811	1q43	2
76	Rattus norvegicus succinate-CoA ligase, GDP-forming, alpha subunit (Suclg1), mRNA Succinate-CoA ligase, GDP-forming, alpha subunit	114597	NM_053752	3766	chr4:106588209	4q33	2
77	Rattus norvegicus eukaryotic translation initiation factor 4A1 (Eif4a1), mRNA Eukaryotic translation initiation factor 4A1	287436	NM_199372	91523	chr10:56485977	10q24	2
78	Rattus norvegicus carboxypeptidase E (Cpe), mRNA Carboxypeptidase E	25669	NM_013128	7149	chr16:26748600	16p13	2
79	Rattus norvegicus PERP, TP53 apoptosis effector (predicted) (Perp_predicted), mRNA PERP, TP53 apoptosis effector	292949	NM_001106265	101762	chr1:13988628	1p12	2
80	Rattus norvegicus prosaposin (Psap), mRNA Prosaposin	25524	NM_013013	97173 [**]	chr20:27609197	20q11	2
81	Rattus norvegicus solute carrier family 22 (organic cation transporter), member 17 (Slc22a17), mRNA Solute carrier family 22 (organic cation transporter), member 17	305886	NM_177421	7312	chr15:33008997	15p13	2
82	Rattus norvegicus heat shock 27kDa protein 1 (Hspb1), mRNA Heat shock protein 1	24471	NM_031970	3841	chr12:21912656	12q12	2
83	Rattus norvegicus ribosomal protein S3a (Rps3a), mRNA Ribosomal protein S3a	29288	NM_017153	94935	chr2:178092903	2q34	2
84	Rattus norvegicus Y box protein 1 (Ybx1), mRNA Y box protein 1 Y box protein 1	500538	NM_031563	110976 194909	chr1:175179509 chr10:40444645	5q36 5q36	2
85	Rattus norvegicus CD151 antigen (Cd151), mRNA CD151 molecule (Raph blood group)	64315	NM_022523	1465	chr1:201656152	1q41	2
86	Rattus norvegicus ribosomal protein S14 (Rps14), mRNA Transcribed locus, strongly similar to NP_001025790.1 ribosomal protein S14 [Gallus gallus] Ribosomal protein S14	29284	NM_022672	154712 36102	chr5:145426434	5 18q12.1	2
87	Rattus norvegicus ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, isoform 1 (Atp5a1), nuclear gene encoding mitochondrial protein, mRNA ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle	65262	NM_023093	40255	chr18:74735274	18q12.3	2
88	Rattus norvegicus GNAS complex locus (Gnas), transcript variant 3, mRNA GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	24896	NM_019132	31		3q42	2
89	Rattus norvegicus amino-terminal enhancer of split (Aes), mRNA Amino-terminal enhancer of split	29466	NM_019220	11495	chr7:9617179	7q11	2
90	Rattus norvegicus tubulin, beta 5 (Tubb5), mRNA Tubulin, beta 5	29214	NM_173102	2458	chr20:3060261	20p12	2
91	Rattus norvegicus vimentin (Vim), mRNA Vimentin	81818	NM_031140	2710	chr17:87855478	17q12.3	2
92	Rattus norvegicus ribosomal protein S19 (Rps19), mRNA Ribosomal protein S19 Similar to 40S ribosomal protein S19	29287	NM_001037346	127775 196513	chr7:925303	1q21 14	2
93	Rattus norvegicus rod outer segment membrane protein 1 (Rom1), mRNA Rod outer segment membrane protein 1	309201	NM_001009690	145021	chr1:211604575	1q43	2
94	Rattus norvegicus sequestosome 1 (Sqstm1), transcript variant 1, mRNA Sequestosome 1	113894	NM_175843	107103	chr10:35753545	10q21	2
95	Rattus norvegicus mitochondrial ribosomal protein L55 (predicted) (Mrpl55_predicted), nuclear gene encoding mitochondrial protein, mRNA CLIP associating protein 2 Mitochondrial ribosomal protein L55	287356	NM_001105782	19943 4271	chr10:45506297 chr8:118500267	8q32 10q22	2
96	PREDICTED: Rattus norvegicus tripartite motif protein 28 (Trim28), mRNA Tripartite motif-containing 28	116698	XM_001062234	198494	chr1:72892410	1q21	2
97	Rattus norvegicus transmembrane emp24 protein transport domain containing 9 (Tmed9), mRNA Transmembrane emp24 protein transport domain containing 9	361207	NM_001009703	9386	chr17:15072494	17p14	2
98	Rattus norvegicus chaperonin subunit 4 (delta) (Cct4), mRNA Chaperonin subunit 4 (delta)	29374	NM_182814	97889	chr14:103687296	14q22	2
99	Rattus norvegicus alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide (Adh7), mRNA Alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide	171178	NM_134329	42935	chr2:235764293	2q44	2
100	Rattus norvegicus glycoprotein (transmembrane) nmb (Gpnmb), mRNA Glycoprotein (transmembrane) nmb	113955	NM_133298	13778	chr4:77182489	4q24	2

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