NbLib0041: NEI rat eye angle unnormalized (gw,gx)

Last GRIST date: 10/08/2008

Related Publication: Gene Expression Profile of the Rat Eye Iridocorneal Angle: NEIBank Expressed Sequence Tag Analysis. Ahmed F, Torrado M, Zinovieva RD, Senatorov VV, Wistow G, Tomarev SI. Invest Ophthalmol Vis Sci. 2004.

View this library: Full List \| Indexed by Chromosomal Position \| Indexed by GO Term \| Tab Delimited	Understanding NEIBank Data
[**] This UniGene associated with another RefSeq or GenBank in this table. Click to display.	View All Data \| << Previous Page \| Next Page >>

Group#	Description	Entrez Gene Id	GenBank	UniGene (Build Rn #176)	Chromosomal Pos. (BLAT)	Chromosome (UniGene)	Num. Clones
1	Rattus norvegicus actin, beta (Actb), mRNA Actin, beta	81822	NM_031144	94978	chr12:12047099	12p11	96
2	Rattus norvegicus ribosomal protein S2 (Rps2), mRNA Transcribed locus, strongly similar to NP_998444.1 ribosomal protein S2 [Danio rerio] Transcribed locus, strongly similar to NP_114026.3 ribosomal protein S2 [Rattus norvegicus] Ribosomal protein S2 Transcribed locus, strongly similar to NP_114026.3 ribosomal protein S2 [Rattus norvegicus]	83789	NM_031838	156589 203136 2115 220062	chr10:13975353	9 3 10q12 10q12	27
3	Rattus norvegicus insulin-like growth factor binding protein 7 (Igfbp7), mRNA Insulin-like growth factor binding protein 7	289560	NM_001013048	203012	chr14:33010219	14p11	21
4	Rattus norvegicus basigin (Bsg), transcript variant 2, mRNA Basigin	25246	NM_012783	2269	chr7:11509480	7q11	21
5	Rattus norvegicus GNAS complex locus (Gnas), transcript variant 3, mRNA GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	24896	NM_019132	31		3q42	19
6	PREDICTED: Rattus norvegicus similar to Dopachrome tautomerase (predicted) (RGD1564975_predicted), mRNA Dopachrome tautomerase	290484	XM_001078239	162235	chr15:102831703	15q24	17
7	Rattus norvegicus ornithine decarboxylase antizyme 1 (Oaz1), mRNA Ornithine decarboxylase antizyme 1	25502	NM_139081	266	chr7:10395046	7q11	14
8	Rattus norvegicus eukaryotic translation elongation factor 1 alpha 1 (Eef1a1), mRNA Eukaryotic translation elongation factor 1 alpha 1	171361	NM_175838	144660	chr8:83465142 chrX:156022824	8q31	14
9	Rattus norvegicus ferritin, heavy polypeptide 1 (Fth1), mRNA Ferritin heavy chain 1	25319	NM_012848	54447 [**]	chr1:212430424	1q43	14
10	Rattus norvegicus apolipoprotein E (Apoe), mRNA Apolipoprotein E	25728	NM_138828	32351	chr1:79004111	1q21	14
11	Rattus norvegicus tissue inhibitor of metalloproteinase 2 (Timp2), mRNA Tissue inhibitor of metalloproteinase 2	29543	NM_021989	10161	chr10:108358585	10q32.3	13
12	Rattus norvegicus keratin complex 2, basic, gene 5 (Krt2-5), mRNA Transcribed locus, strongly similar to NP_081287.1 keratin 5 [Mus musculus]	369017	NM_183333	217148			12
13	Rattus norvegicus cathepsin B (Ctsb), mRNA Cathepsin B	64529	NM_022597	100909 [**]	chr15:42402868	15p12	12
14	Rattus norvegicus integral membrane protein 2B (Itm2b), mRNA Integral membrane protein 2B	290364	NM_001006963	107335	chr15:54008727	15p11	12
15	Rattus norvegicus calpain, small subunit 1 (Capns1), mRNA H3 histone, family 3B Calpain, small subunit 1	29156	NM_017118	124815 [**] 3430	chr1:85519567 chr13:96540052	10q32.3 1q21	11
16	Rattus norvegicus aquaporin 1 (Aqp1), mRNA Aquaporin 1	25240	NM_012778	1618	chr4:84098387	4q24	11
17	PREDICTED: Rattus norvegicus fibulin 1 (predicted) (Fbln1_predicted), mRNA Fibulin 1	315191	XM_001078267	9375	chr7:123208310	7q34	11
18	Rattus norvegicus CD63 antigen (Cd63), mRNA CD63 antigen	29186	NM_017125	11068	chr7:2209917	7q11	11
19	Rattus norvegicus lamin A (Lmna), transcript variant 2, mRNA Lamin A	60374	NM_001002016	44161	chr2:180615832	2q31-q34	10
20	Rattus norvegicus silver homolog (mouse) (predicted) (Silv_predicted), mRNA Silver homolog (mouse)	362818	NM_001108729	162910	chr7:2008864	7q11	10
21	Rattus norvegicus parathymosin (Ptms), mRNA Parathymosin	83801	NM_031975	3609	chr4:161041947	4q42	10
22	Rattus norvegicus Y box protein 1 (Ybx1), mRNA Y box protein 1 Y box protein 1	500538	NM_031563	110976 214692	chr1:175179848 chr10:40445386 chr5:139866556	5q36 5q36	10
23	Rattus norvegicus vimentin (Vim), mRNA Vimentin	81818	NM_031140	2710	chr17:87847247	17q12.3	10
24	Rattus norvegicus glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding) (Grina), mRNA Glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	266668	NM_153308	5898	chr7:114277230	7q34	9
25	Rattus norvegicus clusterin (Clu), mRNA Clusterin	24854	NM_053021	1780	chr15:45392602	15p12	9
26	Rattus norvegicus glycoprotein (transmembrane) nmb (Gpnmb), mRNA Glycoprotein (transmembrane) nmb	113955	NM_133298	13778	chr4:77161415	4q24	9
27	Rattus norvegicus glutathione peroxidase 3 (Gpx3), mRNA Glutathione peroxidase 3	64317	NM_022525	108074	chr10:40311150	10q22	8
28	Rattus norvegicus protein kinase C, delta binding protein (Prkcdbp), mRNA Protein kinase C, delta binding protein	85332	NM_134449	12281	chr1:163214268	1q33	8
29	Rattus norvegicus neuroblastoma, suppression of tumorigenicity 1 (Nbl1), mRNA Neuroblastoma, suppression of tumorigenicity 1	50594	NM_031609	4073	chr5_random:1706061	5	8
30	Rattus norvegicus phosphatidylethanolamine binding protein 1 (Pebp1), mRNA Phosphatidylethanolamine binding protein 1	29542	NM_017236	29745	chr12:40491549	12q16	7
31	Rattus norvegicus ribophorin I (Rpn1), mRNA Ribophorin I	25596	NM_013067	4224	chr4_random:986394	4	7
32	Rattus norvegicus ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, isoform 1 (Atp5a1), nuclear gene encoding mitochondrial protein, mRNA ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle	65262	NM_023093	40255	chr18:74735296	18q12.3	7
33	Rattus norvegicus prothymosin alpha (Ptma), mRNA Prothymosin alpha	29222	NM_021740	817	chr9:85291198	9q35	7
34	R.norvegicus mRNA for RT1.A2(O) alpha chain RT1 class Ib, locus Aw2 RT1 class I gene (A-2)	24737	X90372	116785 [**] 219212	chr20:4998770 chr20_random:39360	20p12 20p12	7
35	Rattus norvegicus transferrin (Tf), mRNA Transferrin	24825	NM_001013110	91296	chr8:108238361	8q32	7
36	Rattus norvegicus ATPase, Na+/K+ transporting, alpha 1 polypeptide (Atp1a1), mRNA ATPase, Na+/K+ transporting, alpha 1 polypeptide	24211	NM_012504	2992		2q34	7
37	Rattus norvegicus glyceraldehyde-3-phosphate dehydrogenase (Gapdh), mRNA Transcribed locus, strongly similar to NP_002037.2 glyceraldehyde-3-phosphate dehydrogenase [Homo sapiens] Glyceraldehyde 3-phosphate dehydrogenase pseudogene	24383	NM_017008	101713 91450	chr5:117080218	4 4q42	6
38	Rattus norvegicus ribosomal protein L13A (Rpl13a), mRNA Ribosomal protein L13A	317646	NM_173340	92211	chr1:95600909 chr17:29960731 chr18:61825752 chr20:41125367	1q22	6
39	Rattus norvegicus eukaryotic translation initiation factor 5A (Eif5a), mRNA Eukaryotic translation initiation factor 5A	287444	NM_001033681	128212	chr10:56761049	10q24	6
40	Rattus norvegicus MARCKS-like 1 (Marcksl1), mRNA MARCKS-like 1	81520	NM_030862	2486	chr5:148669497	5q36	6
41	Rattus norvegicus death-associated protein (Dap), mRNA Death-associated protein	64322	NM_022526	1531	chr2:83282071	2q22	6
42	Rattus norvegicus calmodulin 1 (Calm1), mRNA Calmodulin 1	24242	NM_031969	4166	chr6:124477568	6q31-q32	6
43	Rattus norvegicus prosaposin (Psap), mRNA Prosaposin	25524	NM_013013	97173	chr20:27595068	20q11	6
44	Rattus norvegicus lysosomal-associated protein transmembrane 4A (Laptm4a), mRNA Lysosomal-associated protein transmembrane 4A	298875	NM_199384	108012	chr6:32410394	6q14	6
45	PREDICTED: Rattus norvegicus heterogeneous nuclear ribonucleoprotein L (Hnrpl), mRNA Heterogeneous nuclear ribonucleoprotein L	80846	XM_001068144	33873	chr1:83917074	1q21	6
46	Rattus norvegicus integral membrane protein 2C (Itm2c), mRNA Integral membrane protein 2C	301575	NM_001009674	8450	chr9:84611796	9q35	6
47	Rattus norvegicus ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide (Atp5b), nuclear gene encoding mitochondrial protein, mRNA ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	171374	NM_134364	92965	chr7:1376586	7q11	6
48	Rattus norvegicus calreticulin (Calr), mRNA Calreticulin	64202	NM_022399	974	chr19:24964797	19q11	6
49	Rattus norvegicus ribosomal protein L10 (Rpl10), mRNA Ribosomal protein L10	81764	NM_031100	102157	chrX:160336696	Xq37	5
50	Rattus norvegicus calponin 3, acidic (Cnn3), mRNA Calponin 3, acidic	54321	NM_019359	57635	chr2:218044783	2q41	5
51	Rattus norvegicus TSC22 domain family, member 1 (Tsc22d1), transcript variant 2, mRNA TSC22 domain family, member 1	498545	NM_013043	3545	chr15:57499579 chr3:123548756	15q11	5
52	Rattus norvegicus aldehyde dehydrogenase family 3, member A1 (Aldh3a1), mRNA Aldehyde dehydrogenase 3 family, member A1	25375	NM_031972	105627	chr10:47365329	10q22	5
53	Rattus norvegicus polyubiquitin (Ubb), mRNA Ubiquitin B Ubiquitin C	192255	NM_138895	1253 3761 [**]	chr10:48738543 chr12:32333192 chr5:139578640	10q23 12q14	5
54	Rattus norvegicus gamma-aminobutyric acid receptor associated protein (Gabarap), mRNA Gamma-aminobutyric acid receptor associated protein	58974	NM_172036	8411	chr10:56837716	10q24	5
55	Rattus norvegicus CD 81 antigen (Cd81), mRNA CD 81 antigen	25621	NM_013087	1975 [**]	chr1:203327301	1q41	5
56	Rattus norvegicus ubiquinol-cytochrome c reductase core protein 1 (Uqcrc1), mRNA Ubiquinol-cytochrome c reductase core protein 1	301011	NM_001004250	3428	chr8:113955934	8q32	5
57	Rattus norvegicus basic helix-loop-helix domain containing, class B3 (Bhlhb3), mRNA Basic helix-loop-helix domain containing, class B3	117095	NM_133303	10784	chr4_random:1955244	4q43	5
58	Rattus norvegicus gap junction membrane channel protein alpha 1 (Gja1), mRNA Gap junction protein, alpha 1	24392	NM_012567	10346 [**]	chr20:35409827	20q11	5
59	Rattus norvegicus ribosomal protein S13 (Rps13), mRNA Ribosomal protein S13 Ribosomal protein S13	161477	NM_130432	103229 198625	chr3:5696543	1q34 1q34	5
60	Rattus norvegicus ribosomal protein L4 (Rpl4), mRNA Ribosomal protein L4 Similar to 60S ribosomal protein L4 (L1)	64302	NM_022510	1133 178164	chr8:68366814	8q24 7q36	5
61	PREDICTED: Rattus norvegicus CD99 antigen (Cd99), mRNA CD99 antigen	652929	XM_001061998	195321			5
62	Rattus norvegicus paxillin (Pxn), mRNA Paxillin	360820	NM_001012147	75	chr12:42332704	12q16	5
63	Mus musculus B-cell translocation gene 1, anti-proliferative (Btg1), mRNA	12226	NM_007569		chr7:34028997		5
64	Rattus norvegicus zinc finger protein 36, C3H type-like 2 (Zfp36l2), mRNA Parathyroid hormone regulated sequence (205bp) Zinc finger protein 36, C3H type-like 2	298765	NM_001036626	220194 [] 22055 []	chr6:7530948	6q12	5
65	Xenopus laevis myristoylated alanine rich protein kinase C substrate (marcks), mRNA Similar to Myristoylated alanine-rich C-kinase substrate (MARCKS) (Protein kinase C substrate 80 kDa protein)	379767	NM_001086606	9560	chr20:41309825	20	5
66	Rattus norvegicus lysyl oxidase-like 1 (Loxl1), mRNA Lysyl oxidase-like 1	315714	NM_001012125	770	chr8:62106185	8q24	5
67	Rattus norvegicus ribosomal protein L8 (Rpl8), mRNA Ribosomal protein L8 Transcribed locus, strongly similar to NP_001030088.2 ribosomal protein L8 [Rattus norvegicus]	26962	NM_001034916	127774 9810	chr3:4114181	7q34 3	5
68	Rattus norvegicus ATPase, Na+/K+ transporting, beta 1 polypeptide (Atp1b1), mRNA ATPase, Na+/K+ transporting, beta 1 polypeptide	25650	NM_013113	8925	chr13:80234383	13q23	5
69	Ubiquitin A-52 residue ribosomal protein fusion product 1			4300	chr16:19426169	16p14	5
70	Rattus norvegicus ribosomal protein S3 (Rps3), mRNA Ribosomal protein S3	140654	NM_001009239	127805	chr1:156812058	1q32	4
71	Rattus norvegicus tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide (Ywhaz), mRNA Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	25578	NM_013011	1292	chr7:72287487	7q22	4
72	Rattus norvegicus protein kinase N3 (Pkn3), mRNA Protein kinase N3 SET translocation	296619	NM_001047861	202664 76937	chr3:9072811	3p12 19q12	4
73	PREDICTED: Rattus norvegicus similar to mKIAA1623 protein (predicted) (RGD1563946_predicted), mRNA Similar to mKIAA1623 protein	306340	XR_008586	141288	chr16:18655117	16p14	4
74	Rattus norvegicus similar to F28C1.3a (LOC308398), mRNA Transcribed locus, strongly similar to NP_954600.1 leucine rich repeat containing 68 [Mus musculus]	308398	NM_001107482	213797	chr1_random:1514104	1q21	4
75	PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2010315L10 (predicted) (RGD1306660_predicted), mRNA Unconventional SNARE in the ER 1 homolog (S. cerevisiae)	290627	XM_001065114	2957	chr16:18528303	16p14	4
76	Rattus norvegicus heat shock protein 8 (Hspa8), mRNA Heat shock protein 8 Transcribed locus, strongly similar to NP_990334.1 heat shock 70kDa protein 8 [Gallus gallus] Similar to heat shock protein 8	24468	NM_024351	120392 129299 156512	chr11:5434499 chr6:35426862	5q36 8 6q14	4
77	PREDICTED: Rattus norvegicus actin, gamma, cytoplasmic 1 (Actg1), mRNA Actin, gamma 1	287876	XM_001076100	101464	chr3:71261989	3	4
78	PREDICTED: Rattus norvegicus mitochondrial carrier homolog 1 (C. elegans) (Mtch1), mRNA Mitochondrial carrier homolog 1 (C. elegans)	294313	XM_215358	98516	chr20:7665742	20p12	4
79	Rattus norvegicus similar to RIKEN cDNA 9130404D14 (RGD1307018), mRNA Family with sequence similarity 129, member B	362115	NM_001109885	4205	chr3:11862632	3p11	4
80	Rattus norvegicus lactate dehydrogenase A (Ldha), mRNA Lactate dehydrogenase A Similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M)	24533	NM_017025	107896 154989	chr1:97403085	1q22 8q13	4
81	Rattus norvegicus Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived) protein (Fau), mRNA Transcribed locus, strongly similar to NP_001988.1 ubiquitin-like protein fubi and ribosomal protein S30 precursor [Homo sapiens] Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed	29752	NM_001012739	112145 5998	chr1:208695094 chr6:86526456	6 1q43	4
82	Rattus norvegicus eukaryotic translation elongation factor 2 (Eef2), mRNA Eukaryotic translation elongation factor 2	29565	NM_017245	55145 [**]	chr7:10018209	7q11	4
83	Rattus norvegicus secreted acidic cysteine rich glycoprotein (Sparc), mRNA Secreted acidic cysteine rich glycoprotein	24791	NM_012656	98989	chr10:40814507	10q22	4
84	Rattus norvegicus NADH dehydrogenase (ubiquinone) Fe-S protein 2 (Ndufs2), mRNA NADH dehydrogenase (ubiquinone) Fe-S protein 2	289218	NM_001011907	99666	chr13:87128890	13q24	4
85	Rattus norvegicus RAB11B, member RAS oncogene family (Rab11b), mRNA RAB11B, member RAS oncogene family	79434	NM_032617	124832	chr7:16234481	7q12	4
86	Rattus norvegicus aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase) (Akr7a2), mRNA Aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase)	171445	NM_134407	8548	chr5:158097671	5q36	4
87	Rattus norvegicus CG6210-like (LOC362065), transcript variant 1, mRNA G protein-coupled receptor 177	362065	NM_199408	103639	chr2:258014437	2q45	4
88	Rattus norvegicus cysteine and glycine-rich protein 1 (Csrp1), mRNA Cysteine and glycine-rich protein 1	29276	NM_017148	108075	chr13:48750201	13q13	4
89	Rattus norvegicus ribosomal protein S17 (Rps17), mRNA Transcribed locus, strongly similar to NP_058848.1 ribosomal protein S17 [Rattus norvegicus] Ribosomal protein S17	29286	NM_017152	162443 6920	chr3:20159468	1 1q31	4
90	Rattus norvegicus actinin alpha 4 (Actn4), mRNA Actinin alpha 4	63836	NM_031675	15777	chr1:84005306	1q22	4
91	Rattus norvegicus protein kinase, cAMP dependent regulatory, type I, alpha (Prkar1a), mRNA Transcribed locus, strongly similar to NP_037313.1 protein kinase, cAMP dependent regulatory, type I, alpha [Rattus norvegicus]	25725	NM_013181	216439			4
92	Rattus norvegicus aldehyde dehydrogenase 2 (Aldh2), nuclear gene encoding mitochondrial protein, mRNA Aldehyde dehydrogenase 2, mitochondrial	29539	NM_032416	101781	chr12:36081743	12q16	4
93	Rattus norvegicus tubulin, alpha 1A (Tuba1a), mRNA Tubulin, alpha 1B	64158	NM_022298	99661	chr7:137730477	7q36	4
94	Rattus norvegicus stearoyl-Coenzyme A desaturase 2 (Scd2), mRNA Stearoyl-Coenzyme A desaturase 2	83792	NM_031841	83595	chr1:249358160	1q54	4
95	Rattus norvegicus cystatin C (Cst3), mRNA Cystatin C	25307	NM_012837	106351	chr3:137652039	3q41	4
96	PREDICTED: Mus musculus heterogeneous nuclear ribonucleoprotein A0 (Hnrpa0), mRNA Transcribed locus, strongly similar to XP_230789.4 PREDICTED: similar to SAM domain and HD domain-containing protein 1 (Interferon-gamma-inducible protein Mg11) [Rattus norvegicus]	77134	XM_001001311	98368	chr17:12452278	17	4
97	Rattus norvegicus solute carrier family 2 (facilitated glucose transporter), member 1 (Slc2a1), mRNA Solute carrier family 2 (facilitated glucose transporter), member 1	24778	NM_138827	3205	chr5:139690878	5q36.1	4
98	Rattus norvegicus tumor protein, translationally-controlled 1 (Tpt1), mRNA Tumor protein, translationally-controlled 1	116646	NM_053867	36610	chr15:56752466	15q11	4
99	Rattus norvegicus pyruvate dehydrogenase kinase, isoenzyme 2 (Pdk2), mRNA Pyruvate dehydrogenase kinase, isoenzyme 2	81530	NM_030872	88597	chr10:83715658	10q31	4
100	Rattus norvegicus ring finger protein 10 (Rnf10), mRNA Ring finger protein 10	288710	NM_001011904	11656	chr12:42609878	12q16	4

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