NbLib0060: NEI rat whole eye combined (gw,gx,hf,hg,jd,je,kr,ks)

Last GRIST date: 03/21/2008

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Group#	Description	Entrez Gene Id	GenBank	UniGene (Build Rn #176)	Chromosomal Pos. (BLAT)	Chromosome (UniGene)	Num. Clones
1	Rattus norvegicus rhodopsin (Rho), mRNA Rhodopsin	24717	NM_033441	92530 [**]	chr4:152058125	4q42	158
2	Rattus norvegicus crystallin, alpha A (Cryaa), mRNA Crystallin, alpha A	24273	NM_012534	127769			149
3	Rattus norvegicus similar to Gamma crystallin A (Gamma crystallin 1-1) (LOC684028), mRNA Crystallin, gamma B Crystallin, gamma C	684028	NM_001080936	202960 81172	chr9:63730906	9q32 9q32-q33	128
4	Rattus norvegicus crystallin, gamma D (Crygd), mRNA Crystallin, gamma D	24278	NM_033095	64655	chr9:64679688 chrUn:24740117	9q32	123
5	Rattus norvegicus actin, beta (Actb), mRNA Actin, beta	81822	NM_031144	94978	chr12:12048080	12p11	108
6	PREDICTED: Rattus norvegicus crystallin, beta A1 (Cryba1), mRNA Crystallin, beta A1	25583	XM_001080813	20326	chr10:63759693	10q24-q25	62
7	Rattus norvegicus crystallin, alpha B (Cryab), mRNA Crystallin, alpha B	25420	NM_012935	98208	chr8:54111201 chrUn:25169395	8q23	53
8	Mus musculus guanine nucleotide binding protein, alpha transducing 1 (Gnat1), mRNA Guanine nucleotide binding protein, alpha transducing 1 (predicted)	14685	NM_008140	8781	chr8:112925608	8q32	49
9	Rattus norvegicus crystallin, beta B1 (Crybb1), mRNA Crystallin, beta B1	25421	NM_012936	10602	chr19:10619159		41
10	Rattus norvegicus ribosomal protein S2 (Rps2), mRNA Transcribed locus, strongly similar to XP_951116.1 PREDICTED: similar to ribosomal protein S2 isoform 7 [Homo sapiens] Ribosomal protein S2	83789	NM_031838	156589 2115	chr10:13975495	9 10q12	38
11	Rattus norvegicus crystallin, beta B3 (Crybb3), mRNA Crystallin, beta B3	64349	NM_031690	19693			30
12	Rattus norvegicus keratin complex 2, basic, gene 5 (Krt2-5), mRNA Keratin complex 2, basic, gene 5 Transcribed locus, strongly similar to NP_081287.1 keratin complex 2, basic, gene 5 [Mus musculus]	369017	NM_183333	129725 217148	chr7:140373316	7	26
13	Rattus norvegicus basigin (Bsg), mRNA Basigin	25246	NM_012783	2269	chr7:11509027	7q11	26
14	Rattus norvegicus ferritin, heavy polypeptide 1 (Fth1), mRNA Ferritin, heavy polypeptide 1	25319	NM_012848	54447	chr1:212430448	1q43	22
15	Rattus norvegicus insulin-like growth factor binding protein 7 (Igfbp7), mRNA Insulin-like growth factor binding protein 7	289560	NM_001013048	203012	chr14:33010206	14p11	21
16	Rattus norvegicus eukaryotic translation elongation factor 1 alpha 1 (Eef1a1), mRNA Eukaryotic translation elongation factor 1 alpha 1 Transcribed locus, strongly similar to XP_899678.1 PREDICTED: similar to eukaryotic translation elongation factor 1 alpha 1 isoform 1 [Mus musculus]	171361	NM_175838	144660 195004	chr3:145107262 chr8:83464813 chrX:156022835	8q31 X	21
17	Rattus norvegicus GNAS complex locus (Gnas), transcript variant 3, mRNA GNAS complex locus	24896	NM_019132	31		3q42	21
18	Rattus norvegicus keratin complex 1, acidic, gene 12 (Krt1-12), mRNA Keratin complex 1, acidic, gene 12	360625	NM_001008761	94852	chr10:88326879	10q32.1	20
19	Rattus norvegicus crystallin, beta A4 (Cryba4), mRNA Crystallin, beta A4	64348	NM_031689	10802			20
20	PREDICTED: Rattus norvegicus similar to Dopachrome tautomerase (predicted) (RGD1564975_predicted), mRNA Similar to Dopachrome tautomerase (predicted)	290484	XM_001078239	162235	chr15:102822894	15q24	19
21	Rattus norvegicus crystallin, beta A2 (Cryba2), mRNA Crystallin, beta A2	286925	NM_173140	204241	chr9:74222881	9q33	19
22	Rattus norvegicus receptor accessory protein 6 (Reep6), mRNA Receptor accessory protein 6	362835	NM_001013218	9353	chr7:10886293	7q11	19
23	Rattus norvegicus ornithine decarboxylase antizyme 1 (Oaz1), mRNA Ornithine decarboxylase antizyme 1	25502	NM_139081	266	chr7:10395235	7q11	19
24	Rattus norvegicus glyceraldehyde-3-phosphate dehydrogenase (Gapdh), mRNA Transcribed locus, strongly similar to NP_002037.2 glyceraldehyde-3-phosphate dehydrogenase [Homo sapiens] Glyceraldehyde-3-phosphate dehydrogenase	24383	NM_017008	101713 91450	chr4:161283737 chr5:117080220	4 4q42	19
25	Rattus norvegicus apolipoprotein E (Apoe), mRNA Apolipoprotein E	25728	NM_138828	32351	chr1:79004153	1q21	19
26	Rattus norvegicus Y box protein 1 (Ybx1), mRNA Y box protein 1 Y box protein 1	500538	NM_031563	110976 194909	chr1:175179801 chr10:40444587 chr5:139863891	5q36 5q36	18
27	Rattus norvegicus calpain, small subunit 1 (Capns1), mRNA Calpain, small subunit 1	29156	NM_017118	3430	chr1:85519567 chr13:96539982 chr7:91622540	1q21	17
28	Rattus norvegicus retinal degeneration, slow (Rds), mRNA Retinal degeneration, slow	25534	NM_013021	48882	chr1:137553304 chr15:63208286 chr3:20159606 chr9:9251036	9q12	16
29	Mus musculus crystallin, gamma S (Crygs), mRNA Crystallin, gamma S (predicted)	12970	NM_009967	198271	chr11:80417643	11q23	15
30	Rattus norvegicus integral membrane protein 2B (Itm2b), mRNA Integral membrane protein 2B	290364	NM_001006963	107335	chr15:54009195	15p11	14
31	Rattus norvegicus aldehyde dehydrogenase family 3, member A1 (Aldh3a1), mRNA Aldehyde dehydrogenase family 3, member A1	25375	NM_031972	105627	chr10:47365329	10q22	14
32	Rattus norvegicus ribosomal protein S8 (Rps8), mRNA	65136	NM_031706		chr10:108310555 chr5:137466847		13
33	Rattus norvegicus cathepsin B (Ctsb), mRNA Cathepsin B	64529	NM_022597	100909	chr15:42402868	15p12	13
34	Rattus norvegicus parathymosin (Ptms), mRNA Parathymosin	83801	NM_031975	3609	chr4:161041947	4q42	13
35	Rattus norvegicus vimentin (Vim), mRNA Vimentin	81818	NM_031140	2710	chr17:87847247	17q12.3	13
36	PREDICTED: Rattus norvegicus silver homolog (mouse) (predicted) (Silv_predicted), mRNA	362818	XM_001071280		chr7:2008872		13
37	Rattus norvegicus glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) (Grina), mRNA Glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding)	266668	NM_153308	5898	chr7:114277232	7q34	12
38	Rattus norvegicus CD63 antigen (Cd63), mRNA CD63 antigen	29186	NM_017125	11068	chr7:2209917	7q11	12
39	PREDICTED: Rattus norvegicus similar to Retinal rod rhodopsin-sensitive cGMP 3,5-cyclic phosphodiesterase gamma-subunit (GMP-PDE gamma), transcript variant 2 (LOC688297), mRNA	688297	XM_001081805				12
40	Rattus norvegicus phosphatidylethanolamine binding protein 1 (Pebp1), mRNA Phosphatidylethanolamine binding protein 1	29542	NM_017236	29745	chr12:40491404	12q16	11
41	Rattus norvegicus UNC-119 homolog (C. elegans) (Unc119), mRNA UNC-119 homolog (C. elegans)	29402	NM_017188	1609	chr10:64286889	10q25	11
42	Rattus norvegicus polyubiquitin (Ubb), mRNA Polyubiquitin	192255	NM_138895	1253	chr10:48738823 chr5:139578640	10q23	11
43	Rattus norvegicus ribosomal protein L13A (Rpl13a), mRNA Ribosomal protein L13A	317646	NM_173340	92211	chr1:95600909 chr17:29960731 chr18:61825752 chr20:41125367	1q22	11
44	Rattus norvegicus ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, isoform 1 (Atp5a1), mRNA ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, isoform 1	65262	NM_023093	40255	chr18:74735247	18q12.3	11
45	Rattus norvegicus calmodulin 1 (Calm1), mRNA Calmodulin 1 Similar to Protein C14orf102 homolog (predicted)	24242	NM_031969	4166 99436	chr6:124477551	6q31-q32 6q32	11
46	Rattus norvegicus tubulin, alpha 1 (Tuba1), mRNA Tubulin, alpha 1C Tubulin, alpha 1A	64158	NM_022298	154526 99661	chr7:137707869	7q36 7q36	11
47	Rattus norvegicus ribophorin I (Rpn1), mRNA Ribophorin I	25596	NM_013067	4224	chr4_random:976925	4	11
48	Rattus norvegicus aquaporin 1 (Aqp1), mRNA Aquaporin 1	25240	NM_012778	1618	chr4:84098387	4q24	11
49	PREDICTED: Rattus norvegicus fibulin 1 (predicted) (Fbln1_predicted), mRNA Fibulin 1 (predicted)	315191	XM_001078267	9375	chr7:123208213	7q34	11
50	Rattus norvegicus glycoprotein (transmembrane) nmb (Gpnmb), mRNA Glycoprotein (transmembrane) nmb	113955	NM_133298	13778	chr4:77182489	4q24	11
51	Rattus norvegicus acidic ribosomal phosphoprotein P0 (Arbp), mRNA Acidic ribosomal phosphoprotein P0	64205	NM_022402	1079	chr12:42315929 chr8:124254639	12q16	10
52	Rattus norvegicus thymosin, beta 4 (Tmsb4x), mRNA Thymosin, beta 4	81814	NM_031136	212208	chr1:187114875 chr5:59581947	6	10
53	Rattus norvegicus retinal S-antigen (Sag), mRNA Retinal S-antigen	25539	NM_013023	9856	chr9:86759733	9q35	10
54	Rattus norvegicus rod outer segment membrane protein 1 (Rom1), mRNA Rod outer segment membrane protein 1	309201	NM_001009690	145021	chr1:211604301	1q43	10
55	Rattus norvegicus cysteine and glycine-rich protein 1 (Csrp1), mRNA Cysteine and glycine-rich protein 1	29276	NM_017148	108075	chr13:48774849	13q13	10
56	Rattus norvegicus lamin A (Lmna), transcript variant 2, mRNA Lamin A	60374	NM_001002016	44161	chr2:180602596	2q31-q34	10
57	Rattus norvegicus transferrin (Tf), mRNA Transferrin	24825	NM_001013110	91296	chr8:108238256	8q32	10
58	Rattus norvegicus glycoprotein, synaptic 2 (Gpsn2), mRNA Glycoprotein, synaptic 2 Similar to glycoprotein, synaptic 2 (predicted)	191576	NM_138549	107358 154889	chr19:26232686	19q11 1q11	10
59	Rattus norvegicus clusterin (Clu), mRNA Clusterin	24854	NM_053021	1780	chr15:45392628	15p12	9
60	Rattus norvegicus aldolase A (Aldoa), mRNA Aldolase A Transcribed locus, strongly similar to NP_036627.1 aldolase A [Rattus norvegicus]	24189	NM_012495	1774 178420	chr1:211691083	1q36 18	9
61	PREDICTED: Rattus norvegicus neural retina leucine zipper gene (predicted) (Nrl_predicted), mRNA	290221	XM_001055469		chr15:33652111		9
62	Rattus norvegicus prothymosin alpha (Ptma), mRNA Prothymosin alpha	29222	NM_021740	817	chr9:85294983	9q35	9
63	Rattus norvegicus stearoyl-Coenzyme A desaturase 2 (Scd2), mRNA Stearoyl-Coenzyme A desaturase 2	83792	NM_031841	83595	chr1:249358139	1q54	9
64	Rattus norvegicus glucose phosphate isomerase (Gpi), mRNA Glucose phosphate isomerase	292804	NM_207592	84435	chr1:86676765	1q21	9
65	Rattus norvegicus glutamate-ammonia ligase (glutamine synthase) (Glul), mRNA Glutamate-ammonia ligase (glutamine synthase)	24957	NM_017073	2204		13q22	9
66	Rattus norvegicus ubiquinol-cytochrome c reductase core protein 1 (Uqcrc1), mRNA Ubiquinol-cytochrome c reductase core protein 1	301011	NM_001004250	3428	chr8:113965098	8q32	9
67	Rattus norvegicus glutathione peroxidase 3 (Gpx3), mRNA Glutathione peroxidase 3	64317	NM_022525	108074	chr10:40311150	10q22	8
68	Rattus norvegicus ribosomal protein L10A (Rpl10a), mRNA Similar to ribosomal protein L10a Ribosomal protein L10A	81729	NM_031065	192843 2262	chr20:6569599 chr4:4988526	5q36 20p12	8
69	Rattus norvegicus tumor protein, translationally-controlled 1 (Tpt1), mRNA Tumor protein, translationally-controlled 1	116646	NM_053867	36610	chr1:19563354 chr15:56752457	15q11	8
70	Rattus norvegicus neuroblastoma, suppression of tumorigenicity 1 (Nbl1), mRNA Neuroblastoma, suppression of tumorigenicity 1	50594	NM_031609	4073	chr5_random:1706114	5	8
71	Rattus norvegicus tubulin, beta 2c (Tubb2c), mRNA Tubulin, beta 2c	296554	NM_199094	110562	chr18:63919780 chr3:3388090	3p13	8
72	Rattus norvegicus pyruvate kinase, muscle (Pkm2), mRNA Transcribed locus, strongly similar to NP_872270.1 pyruvate kinase 3 isoform 2 [Homo sapiens] Pyruvate kinase, muscle	25630	NM_053297	115631 1556	chr16:75638592 chr20:17545339 chr8:63501164	16 8q24	8
73	Rattus norvegicus protein kinase C, delta binding protein (Prkcdbp), mRNA Protein kinase C, delta binding protein	85332	NM_134449	12281	chr1:163214086	1q33	8
74	Rattus norvegicus hnRNP-associated with lethal yellow (Raly), mRNA HnRNP-associated with lethal yellow	296301	NM_001011958	162714	chr3:145275767	3q41	8
75	Rattus norvegicus prosaposin (Psap), mRNA Prosaposin	25524	NM_013013	97173	chr20:27609197	20q11	8
76	Rattus norvegicus lactate dehydrogenase A (Ldha), mRNA Lactate dehydrogenase A Similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M) (predicted)	24533	NM_017025	107896 154989	chr1:97403085	1q22 8q13	8
77	Rattus norvegicus ribosomal protein L13 (Rpl13), mRNA Transcribed locus, strongly similar to NP_150254.1 ribosomal protein L13 [Homo sapiens] Transcribed locus, strongly similar to NP_150254.1 ribosomal protein L13 [Homo sapiens] Ribosomal protein L13	81765	NM_031101	10407 156566 908	chr19:53437872 chr8:5410099	10 8 19q12	8
78	Rattus norvegicus integral membrane protein 2C (Itm2c), mRNA Integral membrane protein 2C	301575	NM_001009674	8450	chr9:84611778	9q35	8
79	Rattus norvegicus ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide (Atp5b), nuclear gene encoding mitochondrial protein, mRNA ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide	171374	NM_134364	92965	chr7:1376562	7q11	8
80	Xenopus tropicalis myristoylated alanine-rich protein kinase C substrate (marcks), mRNA Myristoylated alanine rich protein kinase C substrate	448317	NM_001006692	9560	chr20:41309607	20	8
81	Rattus norvegicus Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 (Cited2), mRNA Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	114490	NM_053698	31765	chr1:12721507	1p12	7
82	Rattus norvegicus enolase 1, alpha (Eno1), mRNA Enolase 1, alpha	24333	NM_012554	4236	chr3:55201418 chr5:167401435 chr6:127304433 chrX:41099242	5q36	7
83	Rattus norvegicus cystatin C (Cst3), mRNA Cystatin C	25307	NM_012837	106351	chr3:137650948	3q41	7
84	Rattus norvegicus crystallin, beta B2 (Crybb2), mRNA Crystallin, beta B2	25422	NM_012937	10350	chr5:34156871		7
85	PREDICTED: Rattus norvegicus oxysterol binding protein 2 (predicted) (Osbp2_predicted), mRNA	305475	XM_001066915		chr14:84352301		7
86	Rattus norvegicus solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 (Slc17a7), mRNA Solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7	116638	NM_053859	10267	chr1:95646601	1q22	7
87	Rattus norvegicus ribosomal protein L6 (Rpl6), mRNA Ribosomal protein L6 Ribosomal protein L35a	117042	NM_053971	2660 2812	chr1:206730074 chr12:6574189 chr5:165189321 chr6:129220810	12q16 1q31	7
88	Rattus norvegicus eukaryotic translation initiation factor 5A (Eif5a), mRNA Eukaryotic translation initiation factor 5A	287444	NM_001033681	128212	chr10:56761191	10q24	7
89	Rattus norvegicus carboxypeptidase E (Cpe), mRNA Carboxypeptidase E	25669	NM_013128	7149	chr16:26748591	16p13	7
90	Rattus norvegicus gamma-aminobutyric acid receptor associated protein (Gabarap), mRNA Gamma-aminobutyric acid receptor associated protein	58974	NM_172036	8411	chr10:56837729	10q24	7
91	Mus musculus zinc finger protein 385 (Zfp385), mRNA Similar to zinc finger protein 385	29813	NM_013866	179527	chr7:142225154	7q36	7
92	Rattus norvegicus gap junction membrane channel protein alpha 1 (Gja1), mRNA Gap junction membrane channel protein alpha 1	24392	NM_012567	10346	chr20:35409860	20q11	7
93	Rattus norvegicus ddx5 gene (Ddx5), mRNA Ddx5 gene	287765	NM_001007613	162208	chr10:96132016	10q32.1	7
94	Rattus norvegicus ribosomal protein L4 (Rpl4), mRNA Ribosomal protein L4 Similar to 60S ribosomal protein L4 (L1)	64302	NM_022510	1133 178164	chr8:68366820	8q24 7q36	7
95	PREDICTED: Rattus norvegicus mitochondrial carrier homolog 1 (C. elegans) (Mtch1), mRNA Mitochondrial carrier homolog 1 (C. elegans)	294313	XM_215358	98516	chr20:7665742	20p12	7
96	Rattus norvegicus ATPase, Na+/K+ transporting, alpha 1 polypeptide (Atp1a1), mRNA ATPase, Na+/K+ transporting, alpha 1 polypeptide	24211	NM_012504	2992		2q34	7
97	Rattus norvegicus ribosomal protein L10 (Rpl10), mRNA Ribosomal protein L10	81764	NM_031100	102157	chr7:135199382 chrX:160336696	Xq37	7
98	PREDICTED: Rattus norvegicus ribosomal protein S5 (Rps5), mRNA	25538	XM_001062647		chr1:72832149		7
99	Rattus norvegicus reticulon 4 (Rtn4), mRNA Reticulon 4	83765	NM_031831	1348	chr14:110750551	14q22	7
100	Rattus norvegicus ribosomal protein S3 (Rps3), mRNA Ribosomal protein S3	140654	NM_001009239	127805	chr1:156811991	1q32	6

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