NbLib0087: NEI rabbit eye minus lens and cornea unnormalized (nag)

Last GRIST date: 10/16/2008

Related Publication: Development of a Microarray Chip for Gene Expression in Rabbit Ocular Research. Michael P. Popp, Li Liu, Adrian Timmers, Douglas W. Esson, Lineu Shiroma, Craig Meyers, Scott Berceli, Ming Tao, Graeme Wistow, Gregory S. Schultz, Mark B. Sherwood. Mol Vis. 2007. 13:164-173. View Publication

View this library: Full List | Indexed by Chromosome | Indexed by GO Term | Tab Delimited Understanding NEIBank Data
[**] This UniGene associated with another RefSeq or GenBank in this table. Click to display. View All Data | << Previous Page | Next Page >>
Group#Description Entrez Gene IdGenBankUniGene (Build Ocu #11) ChromosomeNum. Clones
1
  • Oryctolagus cuniculus rhodopsin (LOC100009200), mRNA
  • Rhodopsin
    		• 100009200
    		NM_001082349   915 [**] 
    		   32
    2
  • PREDICTED: Macaca mulatta guanine nucleotide binding protein, alpha transducing activity polypeptide 1 (GNAT1), mRNA
    		• 703881
    		XM_001103202       25
    3
  • Oryctolagus cuniculus osteonectin mRNA, partial cds
  • Transcribed locus, moderately similar to NP_989715.1 transcription factor CP2 [Gallus gallus]
  • Secreted protein, acidic, cysteine-rich (osteonectin)
    		• 100009355
    		AF247647   544 [**] 
    6366 [**] 
    		   21
    4
  • Oryctolagus cuniculus mRNA for alpha 2 type I collagen, partial cds
  • Ferritin, heavy polypeptide 1
  • Alpha 2(I) procollagen
  • Alpha 2 type I collagen
    		• 100008997
    		D49399   1521  
    6518  
    7316  
    		   18
    5
  • Oryctolagus cuniculus CD38 molecule (CD38), mRNA
  • Transcribed locus
  • Transcribed locus
  • Transcribed locus
  • Transcribed locus
    		• 100009409
    		NM_001082683   1561 [**] 
    208  
    6788  
    7049 [**] 
    		   14
    6
  • Transcribed locus, strongly similar to NP_037004.1 phosducin [Rattus norvegicus]
    		•     3741  
    		   13
    7
  • Oryctolagus cuniculus creatine kinase, muscle (CKM), mRNA
  • Creatine kinase, muscle
    		• 100009056
    		NM_001082239   6249  
    		   12
    8
  • Rabbit multifunctional thyroid hormone binding protein mRNA, complete cds
    		•   J05602       12
    9
  • Oryctolagus cuniculus apolipoprotein D (APOD), mRNA
  • Apolipoprotein D
    		• 100009080
    		NM_001082258   1146  
    		   11
    10
  • Oryctolagus cuniculus gamma non-muscle actin (ACT-5), mRNA
  • Rabbit alpha-actin messenger fragment (aa 72 to 145)
  • Rabbit alpha-actin messenger fragment (aa 309 to 375)
    		• 100009272
    		NM_001101683   3355 [**] 
    6285 [**] 
    		   11
    11
  • Oryctolagus cuniculus aldolase A (ALDOA), mRNA
  • Aldolase A
    		• 100009055
    		NM_001082238   864  
    		   11
    12
  • PREDICTED: Canis familiaris similar to ribosomal protein S3a, transcript variant 1 (LOC608454), mRNA
  • Transcribed locus, strongly similar to NP_058849.1 ribosomal protein S3a [Rattus norvegicus]
    		• 608454
    		XM_535263   1654  
    		   8
    13
  • Oryctolagus cuniculus apolipoprotein E (APOE), mRNA
  • Apolipoprotein E
    		• 100009337
    		NM_001082643   6224 [**] 
    		   8
    14
  • Transcribed locus, strongly similar to NP_114026.3 ribosomal protein S2 [Rattus norvegicus]
    		•     682  
    		   8
    15
  • Oryctolagus cuniculus elongation factor 1 alpha (RABEFLA2), mRNA
  • Elongation factor 1 alpha
    		• 100009189
    		NM_001082339   1580  
    		   7
    16
  • Oryctolagus cuniculus ferritin light chain 2 (FTL2), mRNA
  • Ferritin light chain 2
    		• 100009254
    		NM_001101688   6196  
    		   7
    17
  • PREDICTED: Macaca mulatta collagen type I alpha 1 (COL1A1), mRNA
  • Transcribed locus, moderately similar to NP_031768.2 collagen, type I, alpha 1 [Mus musculus]
    		• 574201
    		XM_001096194   7314 [**] 
    		   7
    18
  • Rattus norvegicus polyubiquitin (Ubb), mRNA
    		• 192255
    		NM_138895       7
    19
  • Transcribed locus, strongly similar to NP_034444.1 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 [Mus musculus]
    		•     3761  
    		   7
    20
  • Oryctolagus cuniculus hemoglobin, beta (HBB), mRNA
  • Hemoglobin, beta
    		• 100009084
    		NM_001082260   105  
    		   6
    21
  • Oryctolagus cuniculus osteoglycin (LOC100008835), mRNA
  • Osteoglycin
    		• 100008835
    		NM_001082116   1158  
    		   6
    22
  • Oryctolagus cuniculus hypoxanthine-guanine phosphoribosyltransferase (HPRT) gene, complete cds
    		•   EF219063       6
    23
  • Oryctolagus cuniculus glyceraldehyde-3-phosphate dehydrogenase (LOC100009074), mRNA
  • Glyceraldehyde-3-phosphate dehydrogenase
    		• 100009074
    		NM_001082253   87  
    		   6
    24
  • Transcribed locus
    		•     589  
    		   6
    25
  • Transcribed locus, strongly similar to NP_006168.1 neural retina leucine zipper [Homo sapiens]
  • Transcribed locus
    		•     3753  
    6684  
    		   6
    26
  • Transcribed locus
  • Transcribed locus, strongly similar to NP_666191.1 guanylate cyclase activator 1B [Mus musculus]
    		•     3718  
    6683  
    		   6
    27
  • PREDICTED: Pan troglodytes hypothetical LOC461499 (LOC461499), mRNA
  • Rabbit mRNA for histone H3.3A
  • Transcribed locus, strongly similar to NP_001004080.1 gelsolin [Rattus norvegicus]
    		• 461499
    		XM_517446   48  
    6660  
    		   5
    28
  • Pan troglodytes calmodulin 2 (phosphorylase kinase, delta) (CALM2), mRNA
    		• 459213
    		NM_001098558       5
    29
  • Oryctolagus cuniculus myosin, light chain 1, alkali; skeletal, fast (MYL1), mRNA
  • Myosin, light chain 1, alkali; skeletal, fast
    		• 100009400
    		NM_001101713   247  
    		   5
    30
  • PREDICTED: Canis familiaris similar to tubulin, alpha 1 (LOC607511), mRNA
    		• 607511
    		XM_844208       5
    31
  • Oryctolagus cuniculus decorin (LOC100009171), mRNA
  • Decorin
    		• 100009171
    		NM_001082330   1430  
    		   5
    32
  • PREDICTED: Bos taurus similar to tub homolog (LOC539051), mRNA
    		• 539051
    		XM_584499       5
    33
  • Oryctolagus cuniculus creatine kinase, brain (CKB), mRNA
  • Creatine kinase, brain
    		• 100009085
    		NM_001082261   3366  
    		   5
    34
  • Oryctolagus cuniculus enolase 1, (alpha) (ENO1), mRNA
  • Enolase 1, (alpha)
    		• 100008769
    		NM_001082085   512  
    		   5
    35
  • Transcribed locus, strongly similar to NP_003371.2 vimentin [Homo sapiens]
  • Vimentin
    		•     1765  
    6307  
    		   5
    36
  • Transcribed locus, moderately similar to NP_008859.1 silver homolog [Homo sapiens]
    		•     6679  
    		   5
    37
  • 81% protein similarity to: Peptidase inhibitor 16 [Homo sapiens] (Similar to EST: DN889517)
  • Transcribed locus
    		•   DN889517   601  
    		   5
    38
  • 98% protein similarity to: Alpha-enolase (2-phospho-D-glycerate hydro-lyase) (Non-neural enolase) (NNE) (Enolase 1)
    		•         5
    39
  • 89% protein similarity to: milk fat globule-EGF factor 8 protein isoform b [Homo sapiens]
    		•         5
    40
  • 100% protein similarity to: Eef2 protein [Mus musculus]
    		•         5
    41
  • Oryctolagus cuniculus endothelin-1 (ET-1), mRNA
  • Transcribed locus, strongly similar to NP_033120.1 ribosomal protein S4, X-linked [Mus musculus]
    		• 100009270
    		NM_001101696   1652  
    		   4
    42
  • PREDICTED: Canis familiaris similar to heterogeneous nuclear ribonucleoproteins methyltransferase-like 2, transcript variant 7 (LOC476411), mRNA
    		• 476411
    		XM_858962       4
    43
  • Oryctolagus cuniculus biglycan mRNA, partial cds
  • Biglycan
    		• 100008663
    		AF020290   6406 [**] 
    		   4
    44
  • Transcribed locus, moderately similar to NP_037155.2 retinal S-antigen [Rattus norvegicus]
    		•     118  
    		   4
    45
  • Transcribed locus, moderately similar to NP_031768.2 collagen, type I, alpha 1 [Mus musculus]
    		•     7314 [**] 
    		   4
    46
  • Transcribed locus, strongly similar to NP_036629.1 aldolase C [Rattus norvegicus]
    		•     3745  
    		   4
    47
  • Transcribed locus, strongly similar to NP_775462.2 ribosomal protein L13A [Rattus norvegicus]
    		•     3665  
    		   4
    48
  • Transcribed locus, strongly similar to NP_033441.1 triosephosphate isomerase 1 [Mus musculus]
    		•     398  
    		   4
    49
  • 96% protein similarity to: ribosomal protein L3 [Rattus norvegicus]
    		•         4
    50
  • 100% protein similarity to: ribosomal protein L21 [Homo sapiens]
    		•         4
    51
  • Bos taurus muscleblind-like 2 (Drosophila) (MBNL2), mRNA
  • Transcribed locus
    		• 527679
    		NM_001099710   476  
    		   3
    52
  • PREDICTED: Macaca mulatta hypothetical protein LOC708858 (LOC708858), mRNA
  • Transcribed locus
    		• 708858
    		XM_001097360   3616  
    		   3
    53
  • Oryctolagus cuniculus myosin light chain 2 type 2 (LOC100009542), mRNA
  • Myosin light chain 2 type 2
    		• 100009542
    		NM_001082761   2054  
    		   3
    54
  • PREDICTED: Macaca mulatta proteasome 26S ATPase subunit 3, transcript variant 1 (PSMC3), mRNA
  • Transcribed locus, strongly similar to NP_001026361.1 proteasome 26S ATPase subunit 3 [Gallus gallus]
    		• 713356
    		XM_001106239   358  
    		   3
    55
  • Oryctolagus cuniculus elongation factor 1 A2 (EEF1A-2), mRNA
  • Elongation factor 1 A2
    		• 100008677
    		NM_001082031   6265  
    		   3
    56
  • Bos taurus suppressor of Ty 5 homolog (S. cerevisiae) (SUPT5H), mRNA
    		• 519808
    		NM_001083439       3
    57
  • Oryctolagus cuniculus basigin (Ok blood group) (BSG), mRNA
  • Basigin (Ok blood group)
    		• 100009229
    		NM_001082374   1434  
    		   3
    58
  • PREDICTED: Bos taurus similar to semaphorin Y short (LOC524464), mRNA
    		• 524464
    		XR_028552       3
    59
  • PREDICTED: Macaca mulatta collagen type III alpha 1 (COL3A1), mRNA
  • Transcribed locus, moderately similar to XP_001163769.1 PREDICTED: similar to COL3A1 protein isoform 9 [Pan troglodytes]
    		• 574131
    		XM_001105968   243  
    		   3
    60
  • Oryctolagus cuniculus sarcolumenin (LOC100009112), mRNA
  • Sarcolumenin
    		• 100009112
    		NM_001082281   595  
    		   3
    61
  • Oryctolagus cuniculus tumor protein, translationally-controlled 1 (TPT1), mRNA
  • Tumor protein, translationally-controlled 1
    		• 100008854
    		NM_001082129   3689  
    		   3
    62
  • Oryctolagus cuniculus troponin I (TNNI2), mRNA
  • Troponin I
    		• 100009581
    		NM_001082783   6670  
    		   3
    63
  • Oryctolagus cuniculus lactate dehydrogenase-M (LDH-M), mRNA
  • Lactate dehydrogenase-M
    		• 100009107
    		NM_001082277   1108  
    		   3
    64
  • Oryctolagus cuniculus pyruvate kinase mRNA, partial cds
  • Muscle pyruvate kinase
    		• 100008676
    		AF032389   2156  
    		   3
    65
  • Transcribed locus, strongly similar to XP_001100150.1 PREDICTED: similar to cytochrome c oxidase subunit VIIb precursor [Macaca mulatta]
    		•     975  
    		   3
    66
  • Transcribed locus, strongly similar to NP_032168.1 guanine nucleotide-binding protein, beta-1 subunit [Mus musculus]
  • Transcribed locus
    		•     6712  
    681  
    		   3
    67
  • Transcribed locus, strongly similar to NP_998377.1 myosin, light polypeptide 9, regulatory [Danio rerio]
    		•     3645  
    		   3
    68
  • Transcribed locus
    		•     3626  
    		   3
    69
  • Transcribed locus, strongly similar to NP_036197.1 phosphodiesterase 6G, cGMP-specific, rod, gamma [Mus musculus]
    		•     917  
    		   3
    70
  • Transcribed locus, strongly similar to NP_034027.1 creatine kinase, mitochondrial 1, ubiquitous [Mus musculus]
    		•     3649  
    		   3
    71
  • Transcribed locus, moderately similar to NP_033099.2 rod outer segment membrane protein 1 [Mus musculus]
    		•     3740  
    		   3
    72
  • Transcribed locus, strongly similar to NP_058884.1 UNC-119 homolog [Rattus norvegicus]
    		•     3710  
    		   3
    73
  • Transcribed locus, strongly similar to NP_000977.1 ribosomal protein L24 [Homo sapiens]
    		•     1634  
    		   3
    74
  • 100% protein similarity to: similar to actin alpha [Xenopus laevis] (Similar to EST: DN887879)
  • Transcribed locus, strongly similar to NP_001002066.1 cardiac muscle alpha actin 1 [Danio rerio]
  • Transcribed locus, strongly similar to NP_062056.1 actin alpha cardiac 1 [Rattus norvegicus]
    		•   DN887879   6681  
    7140  
    		   3
    75
  • 100% protein similarity to: barrier to autointegration factor 1 [Homo sapiens]
    		•         3
    76
  • 98% protein similarity to: PREDICTED: similar to reticulon 3 isoform b isoform 3 [Macaca mulatta]
    		•         3
    77
  • 100% protein similarity to: NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa [Rattus norvegicus]
    		•         3
    78
  • 100% protein similarity to: ribosomal protein S9 [synthetic construct]
    		•         3
    79
  • 85% protein similarity to: ribosomal protein L29 [synthetic construct]
    		•         3
    80
  • 89% protein similarity to: interphotoreceptor retinoid-binding protein precursor [Mus musculus]
    		•         3
    81
  • 98% protein similarity to: eukaryotic translation initiation factor 4B [Bos taurus]
    		•         3
    82
  • 95% protein similarity to: glutamate-ammonia ligase [synthetic construct]
    		•         3
    83
  • 100% protein similarity to: heat shock protein 70B [Alligator mississippiensis]
    		•         3
    84
  • 95% protein similarity to: telethonin [Sus scrofa]
    		•         3
    85
  • 89% protein similarity to: NudC domain-containing protein 3
    		•         3
    86
  • 98% protein similarity to: PREDICTED: similar to heat shock protein 90 [Pan troglodytes]
    		•         3
    87
  • 90% protein similarity to: Nef-associated factor 1 isoform 8 [Homo sapiens]
    		•         3
    88
  • 95% protein similarity to: PHR1 isoform 2 [Mus musculus]
    		•         3
    89
  • 100% protein similarity to: HLA-B associated transcript 1 [Homo sapiens]
    		•         3
    90
  • 35% protein similarity to: proline rich protein HaeIII subfamily 1 [Mus musculus]
    		•         3
    91
  • Oryctolagus cuniculus troponin C type 2 (fast) (TNNC2), mRNA
  • Troponin C type 2 (fast)
    		• 100009341
    		NM_001082645   6659  
    		   2
    92
  • PREDICTED: Macaca mulatta similar to anterior pharynx defective 1a homolog, transcript variant 1 (APH1A), mRNA
    		• 706483
    		XM_001099695       2
    93
  • Oryctolagus cuniculus alpha-hemoglobin (HBA), mRNA
  • Alpha-hemoglobin
    		• 100009249
    		NM_001082389   6701  
    		   2
    94
  • PREDICTED: Macaca mulatta similar to chromobox homolog 7, transcript variant 1 (CBX7), mRNA
    		• 703056
    		XM_001097071       2
    95
  • PREDICTED: Equus caballus similar to hevin (LOC100052928), mRNA
    		• 100052928
    		XM_001496019       2
    96
  • PREDICTED: Canis familiaris similar to la related protein, transcript variant 1 (LOC612929), mRNA
    		• 612929
    		XM_848301       2
    97
  • PREDICTED: Macaca mulatta similar to Myotrophin (V-1 protein), transcript variant 1 (MTPN), mRNA
    		• 708941
    		XM_001106584       2
    98
  • PREDICTED: Macaca mulatta guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2, transcript variant 1 (GNAI2), mRNA
  • Transcribed locus, strongly similar to NP_990733.1 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 [Gallus gallus]
    		• 703780
    		XM_001103040   3640  
    		   2
    99
  • Oryctolagus cuniculus fructose-1,6-bisphosphatase (FBP2), mRNA
  • Fructose-1,6-bisphosphatase
    		• 100008853
    		NM_001082128   6263  
    		   2
    100
  • Oryctolagus cuniculus matrix metallopeptidase 1 (interstitial collagenase) (MMP1), mRNA
  • Matrix metallopeptidase 1 (interstitial collagenase)
    		• 100009598
    		NM_001082793   6250  
    		   2


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