NbLib0097: NEI zebrafish whole eye combined (naa,nab,nao,nap,naq)

Last GRIST date: 03/20/2008

View this library: Full List \| Indexed by Chromosomal Position \| Indexed by GO Term \| Tab Delimited	Understanding NEIBank Data
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Group#	Description	Entrez Gene Id	GenBank	UniGene (Build Dr #114)	Chromosomal Pos. (BLAT)	Num. Clones
1	Danio rerio crystallin, gamma S1 (crygs1), mRNA Crystallin, gamma S1	503587	NM_001013276	118493	Zv7_NA848:4891 chr22:9302288	495
2	Danio rerio, Similar to RIKEN cDNA 1010001J12 gene, clone IMAGE:3814939, mRNA Wu:fc48a12		BC044441	75123	chr14:52980114	198
3	Danio rerio beta B3-crystallin (crybb3) mRNA, complete cds Crystallin, beta B3	553184	DQ000468	41866	chr5:2798253	188
4	Danio rerio beta B2-crystallin (crybb2) mRNA, complete cds Crystallin, beta B2	553182	DQ000467	93327	chr8:37575248	184
5	Danio rerio rhodopsin mRNA, complete cds Rhodopsin	30295	AF109368	354	Zv7_NA695:276778 chr7:2534963	155
6	Danio rerio crystallin, gamma M3 (crygm3), mRNA Crystallin, gamma M3	493631	NM_001007786	132190	chr13:1044482 chr9:15703543	147
7	Danio rerio ba1 globin (ba1), mRNA PREDICTED: Danio rerio similar to bA1 globin, transcript variant 3 (LOC556189), mRNA Ba1 globin, like Ba1 globin	30216	NM_131020	114589 132215 23445 [**]	chr3:52937179	135
8	Danio rerio keratin 5 (krt5), mRNA Transcribed locus, strongly similar to XP_708111.1 PREDICTED: hypothetical protein XP_703019 isoform 3 [Danio rerio] Keratin 5	797351	NM_131156	141516 28410	chr23:7739473	97
9	Danio rerio crystallin, gamma S2 (crygs2), mRNA Crystallin, gamma S2	497123	NM_001012262	116458	chr9:21420935	96
10	Danio rerio elongation factor 1 alpha (EFL1-alpha) mRNA, complete cds Elongation factor 1-alpha	30516	L23807	31797	Zv7_NA3241:5986 chr1:26626302 chr13:21751097 chr19:40605397	95
11	Danio rerio beta A1-crystallin (cryba1) mRNA, complete cds Crystallin, beta A1	436683	DQ000462	32100	chr15:26351250	85
12	Danio rerio gelsolin, like 1 (gsnl1), mRNA Transcribed locus, strongly similar to NP_835232.2 gelsolin, like 1 [Danio rerio] Scinderin like a	323285	NM_178131	140457 75268	Zv7_NA192:16953 chr6:55395788	73
13	Danio rerio zgc:92533 (zgc:92533), mRNA Zgc:92533	445051	NM_001003445	140486	Zv7_NA177:3270 chr19:2844447	70
14	Danio rerio zgc:73310 (zgc:73310), mRNA Zgc:73310	393758	NM_200785	115522	chr6:36349962	66
15	Danio rerio crystallin, alpha A (cryaa), mRNA Crystallin, alpha A	100000769	NM_152950	78315	chr1:31897788	64
16	Danio rerio bactin2 (bactin2), mRNA Bactin2	57935	NM_181601	75125	chr1:130671 chr3:38334915	61
17	Danio rerio crystallin, gamma S4 (crygs4), mRNA Crystallin, gamma S4	503586	NM_001013275	87451	chr9:15709015	57
18	Danio rerio crystallin, gamma M2b (crygm2b), mRNA Crystallin, gamma M2b Crystallin, gamma M2c	553954	NM_001020783	116427 85026	chr9:15417714	57
19	Danio rerio zgc:153129 (zgc:153129), mRNA Sb:cb185	768128	NM_001077274	74454	Zv7_NA792:228035	56
20	Danio rerio hemoglobin alpha adult-1 (hbaa1), mRNA Hemoglobin alpha adult-1	30507	NM_131257	76023	chr3:52935440	56
21	Danio rerio betaA2-2-crystallin (cryba22) mRNA, complete cds Zgc:92722	436857	DQ136042	133611	chr9:7354888	56
22	Danio rerio crystallin, gamma M7 (crygm7), mRNA Crystallin, gamma M7	553967	NM_001020795	87946	chr9:15342550	55
23	Danio rerio crystallin, gamma MX (crygmx), mRNA Crystallin, gamma MX	335789	NM_001013262	117303	chr12:28956540	55
24	Danio rerio beta A2-crystallin (cryba2) mRNA, complete cds Zgc:86610	415139	DQ000463	86979	chr6:12593230	49
25	Danio rerio crystallin, gamma M6 (crygm6), mRNA Crystallin, gamma M6	553966	NM_001020794	15363	chr9:15350114	46
26	Danio rerio bactin1 (bactin1), mRNA Bactin1	57934	NM_131031	35143	chr1:4471572	45
27	Danio rerio ribosomal protein, large, P0 (rplp0), mRNA Ribosomal protein, large, P0	58101	NM_131580	55617	chr5:987205	43
28	Danio rerio rod transducin alpha subunit (gnat1) mRNA, complete cds Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1	140428	AY050499	32527	chr6:29777411	40
29	Danio rerio gammaM5-crystallin mRNA, complete cds Crystallin, gamma M5 Crystallin, gamma S3	474328	AY738754	134555 92878	chr9:15700092	40
30	Danio rerio apolipoprotein Eb (apoeb), mRNA Apolipoprotein Eb	30314	NM_131098	23502	chr16:24389185	39
31	Danio rerio ribosomal protein L3 (rpl3), mRNA Ribosomal protein L3	322571	NM_001001590	75583	chr12:5948499 chr3:27585878	39
32	Danio rerio ribosomal protein S2 (rps2), mRNA Vitellogenin 1 Ribosomal protein S2	406565	NM_213279	132171 32854	chr3:15312964	37
33	Danio rerio zgc:77327 (zgc:77327), mRNA Zgc:153219 Zgc:77327 Zgc:153954	404616	NM_207084	115813 118019 89831	Zv7_NA1013:44230 Zv7_NA1131:17992 Zv7_NA1211:425 Zv7_NA1329:30951 Zv7_NA160:6458 Zv7_NA1860:7797 Zv7_NA190:10163 Zv7_NA2304:1989 Zv7_NA3142:26195 Zv7_NA3406:13515 Zv7_NA3409:10162 Zv7_NA3582:1924 Zv7_NA47:67166 Zv7_NA5:136378 Zv7_NA50:22096 Zv7_NA724:327855 Zv7_NA869:144980 Zv7_NA890:80442 Zv7_NA891:80542 Zv7_NA934:66932 Zv7_NA956:8359 Zv7_scaffold2543:406847 Zv7_scaffold2559:1023671 Zv7_scaffold2561:891438 Zv7_scaffold2577:142975 Zv7_scaffold2629:170206 Zv7_scaffold2631:45692 Zv7_scaffold2633:130196 chr1:55020995 chr10:14288260 chr11:24352426 chr12:45688061 chr13:5766856 chr14:41289791 chr15:5522410 chr16:16683620 chr17:20638835 chr18:28534416 chr19:43077921 chr2:44025692 chr20:3397482 chr21:40346419 chr22:28140154 chr23:28717490 chr25:32633314 chr3:676809 chr4:36073159 chr5:63354266 chr6:55741066 chr7:56064332 chr8:36269930 chr9:4736224	37
34	Danio rerio D93 mRNA, 3'UTR, partial sequence Si:dkey-238c7.12 PREDICTED: Danio rerio hypothetical protein LOC795545 (LOC795545), mRNA		AB055669	104534 119064	chr18:5495573	37
35	Danio rerio retinol binding protein 4, like (rbp4l), mRNA Retinol binding protein 4, like PREDICTED: Danio rerio similar to Retinol binding protein 4, like (LOC572897), mRNA	335651	NM_199965	119793 119811	chr12:37957536 chr21:12060408 chr8:45139235	36
36	Danio rerio ribosomal protein SA (rpsa), mRNA Ribosomal protein SA	394027	NM_201052	75127	chr6:3539883	34
37	Danio rerio clone RZ151A1F10 solute carrier family 25, member 5 (SLC25A5) mRNA, complete cds Solute carrier family 25 alpha, member 5	192321	AY398420	30295	chr14:37245946	33
38	Danio rerio fatty acid binding protein 7, brain, a (fabp7a), mRNA Zgc:64194	58128	NM_131605	77718	Zv7_NA1684:1144 Zv7_NA1718:27114 Zv7_NA456:12742 chr10:37891059 chr11:17495275 chr12:1803768 chr14:46881185 chr17:41796879 chr18:3461480 chr2:34268449 chr20:18279763 chr21:39193507 chr3:30960579 chr8:55102398	32
39	Danio rerio beta thymosin-like protein mRNA, complete cds Wu:fj40h03	793949	DQ119892	104772	chr9:43931976	32
40	Danio rerio creatine kinase, brain (ckb), mRNA Creatine kinase, brain	140744	NM_173222	75625	chr20:22182251	30
41	Danio rerio crystallin, alpha B, b (cryabb), mRNA Crystallin, alpha B, b	436943	NM_001002670	80498	chr5:51147978	30
42	Danio rerio zgc:109979 (zgc:109979), mRNA Crystallin, beta A4	553178	NM_001018125	75113	chr19:24388068	29
43	Danio rerio ORF1p, ORF2p genes for ORF1-encoded protein, ORF2-encoded protein, partial and complete cds PREDICTED: Danio rerio hypothetical LOC563121 (LOC563121), mRNA Wu:fc86h08 PREDICTED: Danio rerio similar to zinc finger protein 91 (LOC565853), mRNA	573311	AB211149	132527 132640 135606	Zv7_NA1013:43745 Zv7_NA2517:266 Zv7_NA306:37035 Zv7_NA3409:9677 Zv7_NA47:66681 Zv7_NA956:8764 Zv7_scaffold2487:142629 Zv7_scaffold2506:45355 Zv7_scaffold2524:145676 Zv7_scaffold2561:789496 Zv7_scaffold2567:172972 Zv7_scaffold2631:46097 chr10:14284575 chr11:32676433 chr12:45687576 chr13:5767261 chr14:37269892 chr15:8754425 chr16:2793083 chr17:51663558 chr18:46882684 chr19:34201584 chr2:42660374 chr20:11381119 chr21:40343811 chr22:551927 chr25:6302093 chr3:602837 chr4:9426716 chr5:467882 chr6:48112529 chr7:21985556 chr8:37079995 chr9:48223092	28
44	Danio rerio zgc:153704 (zgc:153704), mRNA Zgc:153704	767759	NM_001076726	87016	Zv7_NA792:274458	28
45	Danio rerio guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2 (gnat2), mRNA Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2	140429	NM_131869	81958	chr8:23637848	27
46	Danio rerio betagammaX-crystallin (crybgx), mRNA Zgc:136220	553474	NM_001033722	30811	chr7:29252982	27
47	Zebrafish DNA sequence from clone CH211-187M11 in linkage group 18, complete sequence Hypothetical protein LOC564660	796228	CR339056	110040	chr7:4276921	27
48	Danio rerio prostaglandin D2 synthase (ptgds), mRNA Prostaglandin D2 synthase	336492	NM_213634	75704	chr24:15349805	27
49	Danio rerio cDNA clone MGC:86789 IMAGE:6900534, complete cds Glyceraldehyde-3-phosphate dehydrogenase	317743	BC083506	35640	chr16:12907585	27
50	Danio rerio guanine nucleotide binding protein (G protein), beta polypeptide 3 (gnb3), mRNA Guanine nucleotide binding protein (G protein), beta polypeptide 3	406483	NM_213202	81932	chr19:2578679	25
51	Danio rerio lysosomal associated protein transmembrane 4 beta (laptm4b), mRNA Lysosomal associated protein transmembrane 4 beta	368911	NM_200098	79940	chr19:30531063	24
52	Danio rerio crystallin, alpha B (cryab), mRNA Crystallin, alpha B	30393	NM_131157	81303	chr15:8737754	24
53	Danio rerio guanine nucleotide binding protein beta polypeptide 2-like 1 (GNB2L1) mRNA, complete cds PREDICTED: Danio rerio similar to guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1, (LOC100002757), mRNA Guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1	30722	AY423038	117711 75572	Zv7_NA179:2088 chr11:27142565 chr14:55809903	23
54	Danio rerio poly A binding protein, cytoplasmic 1 a (pabpc1a), mRNA Poly A binding protein, cytoplasmic 1 a Transcribed locus, strongly similar to NP_001026846.1 poly A binding protein, cytoplasmic 1 a [Danio rerio]	606498	NM_001031676	24504 99104	chr16:48363608	23
55	PREDICTED: Danio rerio similar to crystallin, beta B1 (LOC560055), mRNA	560055	XM_683446		chr1:54999175	23
56	Danio rerio heat shock protein 8 (hspa8), mRNA CDNA clone IMAGE:5410123 Heat shock protein 8	573376	NM_131401	116704 75087	chr10:25061453	22
57	Danio rerio Y box binding protein 1 (ybx1), mRNA Y box binding protein 1	58144	NM_131620	59019	chr8:43425891	22
58	Danio rerio major intrinsic protein of lens fiber 1 (mip1), mRNA Major intrinsic protein of lens fiber 1	445140	NM_001003534	90943	chr23:27639491	22
59	Danio rerio crystallin, gamma N1 (crygn1), mRNA Crystallin, gamma N1	493629	NM_001007784	88049	chr2:51368890	22
60	Danio rerio MHC class II-associated invariant chain mRNA, complete cds Invariant chain-like protein 1	58113	AF114830	7740	chr13:616415 chr14:55633250	21
61	Danio rerio ribosomal protein L7a (rpl7a), mRNA Ribosomal protein L7a	337010	NM_200047	53820	chr5:27273371	21
62	Danio rerio zgc:103750 (zgc:103750), mRNA Zgc:103750	494090	NM_001008633	19486	chr2:27200871	21
63	Danio rerio SWS1 gene for ultraviolet sensitive cone opsin, complete cds Opsin 1 (cone pigments), short-wave-sensitive 1	30582	AB087810	8194	chr4:14068224	20
64	Danio rerio ribosomal protein L4 (rpl4), mRNA Ribosomal protein L4	337090	NM_213107	35139	chr18:14719758	20
65	Danio rerio heat shock protein hsp90beta mRNA, complete cds Heat shock protein 90kDa alpha (cytosolic), class B member 1	30573	AF068772	35688	chr20:53927086	20
66	Danio rerio cDNA clone IMAGE:7116037 PREDICTED: Danio rerio similar to lens epithelial cell protein (LOC100002665), mRNA		BC124371	87153	chr16:23279021	20
67	Danio rerio zgc:136604 (zgc:136604), mRNA Zgc:136604	567024	NM_001031674	89842	chr11:9501921	20
68	Danio rerio translationally controlled tumor protein (tctp), mRNA Translationally controlled tumor protein	30723	NM_198140	75674	chr1:28730306	20
69	Danio rerio guanine nucleotide binding protein (G protein), beta polypeptide 1, like (gnb1l), mRNA Guanine nucleotide binding protein (G protein), beta polypeptide 1, like	406796	NM_213481	26330	Zv7_scaffold2493:15584 chr6:39425495	20
70	Danio rerio zgc:136474 (zgc:136474), mRNA Wu:fc15g08	724003	NM_001045308	77881	chr13:41978657	20
71	Danio rerio ribosomal protein L6 (rpl6), mRNA Ribosomal protein L6	336727	NM_001003844	28231	chr8:8527266	19
72	PREDICTED: Danio rerio hypothetical protein LOC562950 (LOC562950), mRNA CDNA clone IMAGE:7402628	562950	XM_686316	140304	chr20:46129631	19
73	Brachydanio rerio beta-2-microglobulin gene, complete cds Beta-2-microglobulin	30400	L05384	51646	chr4:13283923	19
74	Danio rerio zgc:64006 (zgc:64006), mRNA Zgc:64006	573765	NM_199962	76074	chr6:51735748	19
75	Danio rerio phosphodiesterase 6G, cGMP-specific, rod, gamma (pde6g), mRNA Phosphodiesterase 6G, cGMP-specific, rod, gamma Phosphodiesterase 6G, cGMP-specific, rod, gamma	373876	NM_212799	117353 9829	chr12:32964747	19
76	Danio rerio zgc:92102 (zgc:92102), mRNA Zgc:92102 Wu:fc27e05	447810	NM_001004549	76056 9728	chr10:12742043 chr18:3186512 chr8:14608241	19
77	Unidentified naa04d05				chr18:5491717	19
78	Danio rerio phosphodiesterase 6C, cGMP-specific, cone, alpha prime (pde6c), mRNA Phosphodiesterase 6C, cGMP-specific, cone, alpha prime	393845	NM_200871	117127	chr12:3239455	18
79	Danio rerio zgc:153009 (zgc:153009), mRNA Cannabinoid receptor 1 Zgc:153009	565379	NM_001077612	104315 118085	Zv7_NA1340:29760 Zv7_NA2913:16434 Zv7_NA742:4132 Zv7_scaffold2535:103620 Zv7_scaffold2592:19061 Zv7_scaffold2598:82420 chr1:31747033 chr10:32801483 chr11:15522362 chr12:15847311 chr13:17954252 chr15:87420 chr17:4444977 chr2:49905791 chr20:36028208 chr21:42863709 chr24:6245900 chr3:19491381 chr4:28916911 chr5:26805788 chr6:1880727 chr9:6276108	18
80	Danio rerio guanine nucleotide binding protein (G protein), beta polypeptide 1 (gnb1), mRNA Guanine nucleotide binding protein (G protein), beta polypeptide 1	322104	NM_212609	75526	chr2:22327719 chr7:3421388 chr8:56330411	18
81	Danio rerio DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 (ddx5), mRNA DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	322206	NM_212612	28420	chr3:21124035	18
82	Danio rerio opsin 1 (cone pigments), long-wave-sensitive, 1 (opn1lw1), mRNA Opsin 1 (cone pigments), long-wave-sensitive, 2 Opsin 1 (cone pigments), long-wave-sensitive, 1	30413	NM_131175	116975 81279	chr11:22708331	18
83	Danio rerio mRNA for interphotoreceptor retinoid-binding protein Interphotoreceptor retinoid-binding protein	30735	X85957	75802	chr12:1156509	18
84	70% protein similarity to: unnamed protein product [Tetraodon nigroviridis]				Zv7_NA1460:28911	18
85	Danio rerio cDNA clone IMAGE:7440418 Wu:fd19g06 Wu:fd19g06	565522	BC124276	121688 70123	chr16:39542159 chr19:30128427	17
86	Danio rerio zgc:73359 (zgc:73359), mRNA Zgc:73359	393810	NM_200837	81929		17
87	Danio rerio crystallin, gamma M4 (crygm4), mRNA Crystallin, gamma M4	338225	NM_001007791	79043	Zv7_NA3173:19899 chr21:16344806	17
88	Danio rerio ribosomal protein S3A (rps3a), mRNA Ribosomal protein S3A	337240	NM_200059	907	chr1:21198180	17
89	Danio rerio O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) (ogt), transcript variant 1, mRNA O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) Splicing factor, arginine/serine-rich 5	337685	NM_001017359	105209 76029	chr13:38247298 chr14:10617454	17
90	Danio rerio ribosomal protein L13a (rpl13a), mRNA Ribosomal protein L13a	560828	NM_212784	32450	chr17:2086682	17
91	Danio rerio ferritin, heavy polypeptide 1 (fth1), mRNA Ferritin, heavy polypeptide 1	58108	NM_131585	6496	chr7:6920189	17
92	Danio rerio zgc:136559 (zgc:136559), mRNA Elongation factor-1, delta	678563	NM_001040321	75615	chr22:21438224	17
93	Danio rerio 60S ribosomal protein L12 mRNA, complete cds SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 Ribosomal protein L12	327089	AY648813	2414 [**] 75945	chr5:27677415	16
94	Danio rerio zgc:114181 (zgc:114181), mRNA Zgc:114181	619255	NM_001033737	78537	chr16:48659360	16
95	Danio rerio zgc:64161 (zgc:64161), mRNA Zgc:64161	406400	NM_213126	77427	chr8:49290087	16
96	Danio rerio zgc:136227 (zgc:136227), mRNA Zgc:136227	565765	NM_001031673	75743	chr1:30252882 chr13:33754958	16
97	Danio rerio guanine nucleotide binding protein (G protein), gamma 1 subunit (gng1), mRNA Guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1	335656	NM_199967	81940	chr19:37548333	16
98	Danio rerio ribosomal protein L9 mRNA, partial cds Ribosomal protein L9	336702	AY141976	29079	chr1:19935980	16
99	Danio rerio ribosomal protein L7 (rpl7), mRNA Ribosomal protein L7	336710	NM_213644	30332	chr2:24611800	16
100	Unidentified naa08e07				chr14:52984989	16

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