NbLib0093: NEI zebrafish retina unnormalized (naq)

Last GRIST date: 10/21/2008

View this library: Full List \| Indexed by Chromosomal Position \| Indexed by GO Term \| Tab Delimited	Understanding NEIBank Data
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Group#	Description	Entrez Gene Id	GenBank	UniGene (Build Dr #114)	Chromosomal Pos. (BLAT)	Num. Clones
1	Danio rerio spermatogenesis associated 2 (spata2), mRNA Spermatogenesis associated 2	568830	NM_001080191	29691	chr14:52983414	59
2	Danio rerio, Similar to RIKEN cDNA 1010001J12 gene, clone IMAGE:3814939, mRNA Transcribed locus, strongly similar to NP_055278.1 Lsm3 protein [Homo sapiens]		BC044441	75123	chr14:52980773	27
3	Danio rerio guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1 (gnat1), mRNA Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1	140428	NM_131868	32527	chr6:29783810	15
4	Danio rerio rhodopsin (rho), mRNA Rhodopsin	30295	NM_131084	354	chr7:2534258	15
5	Danio rerio guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2 (gnat2), mRNA Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2	140429	NM_131869	81958	chr8:23640795	14
6	Danio rerio phosphodiesterase 6G, cGMP-specific, rod, gamma (pde6g), mRNA Phosphodiesterase 6G, cGMP-specific, rod, gamma Phosphodiesterase 6G, cGMP-specific, rod, gamma	373876	NM_212799	117353 9829	chr12:32967238	13
7	Danio rerio guanine nucleotide binding protein (G protein), beta polypeptide 3 (gnb3), mRNA Guanine nucleotide binding protein (G protein), beta polypeptide 3	406483	NM_213202	144546	chr19:2571514	11
8	Transcribed locus			122387	chr19:30522999	11
9	Unidentified naq06h09				chr12:27700347	10
10	Danio rerio guanine nucleotide binding protein (G protein), beta polypeptide 1 (gnb1), mRNA Guanine nucleotide binding protein (G protein), beta polypeptide 1	322104	NM_212609	75526 [**]	chr7:3421388 chr8:56326934	8
11	Unidentified naq11h02				Zv7_scaffold2493:15584	8
12	Danio rerio lysosomal associated protein transmembrane 4 beta (laptm4b), mRNA Lysosomal associated protein transmembrane 4 beta	368911	NM_200098	79940	chr19:30524861	7
13	Danio rerio guanine nucleotide binding protein (G protein), beta polypeptide 1, like (gnb1l), mRNA Guanine nucleotide binding protein (G protein), beta polypeptide 1, like Transcribed locus, strongly similar to XP_001343906.2 PREDICTED: wu:fb50a04 [Danio rerio]	406796	NM_213481	144338 26330	Zv7_scaffold2493:16751	6
14	Danio rerio zgc:73336 (zgc:73336), mRNA Transcribed locus	393767	NM_200794	135556	chr5:59915057	6
15	Danio rerio recoverin (rcv1), mRNA Hypothetical LOC792025	335650	NM_199964	9871	chr16:50123750	6
16	Danio rerio phosphodiesterase 6A, cGMP-specific, rod, alpha (pde6a), mRNA Phosphodiesterase 6A, cGMP-specific, rod, alpha	368410	NM_001007160	9853	chr14:22048822	6
17	Danio rerio glutamic-oxaloacetic transaminase 1, soluble (got1), mRNA Glutamic-oxaloacetic transaminase 1, soluble	406330	NM_213057	75522	Zv7_NA6:67460	6
18	Danio rerio N-myc downstream regulated gene 1, like (ndrg1l), mRNA N-myc downstream regulated gene 1, like	393665	NM_200692	8090	chr16:28164626	6
19	Danio rerio zgc:73153 (zgc:73153), mRNA Zgc:73153	393801	NM_200828	82827	chr7:34445084	6
20	Unidentified naq02h11				chr21:4778426	6
21	Danio rerio zgc:154030 (zgc:154030), mRNA Si:ch211-195b13.1	768159	NM_001077302	9896	chr19:15617179	5
22	Danio rerio phosphodiesterase 6C, cGMP-specific, cone, alpha prime (pde6c), mRNA Phosphodiesterase 6C, cGMP-specific, cone, alpha prime	393845	NM_200871	117127	chr12:3263192	5
23	Danio rerio arrestin 3, retinal (X-arrestin) (arr3), mRNA Arrestin 3, retinal (X-arrestin)	796867	NM_200792	117978	chr14:37211946	5
24	Danio rerio zgc:73310 (zgc:73310), mRNA Zgc:73310 Zgc:73310	393758	NM_200785	115522 132971	chr6:36349962	5
25	PREDICTED: Danio rerio phosducin 1 (pdc1), mRNA Phosducin 1	386613	XM_677731	81948	chr2:17470604	5
26	Danio rerio zgc:110380 (zgc:110380), mRNA Zgc:110380 Zgc:174710 Hypothetical protein LOC100001841	550353	NM_001017660	104962 120959 13267	Zv7_NA307:80820 Zv7_scaffold2561:1013997 chr1:53859232 chr17:29746416 chr5:14872050	5
27	Danio rerio opsin 1 (cone pigments), long-wave-sensitive, 1 (opn1lw1), mRNA Opsin 1 (cone pigments), long-wave-sensitive, 1	30413	NM_131175	81279	chr11:22706648	5
28	Unidentified naq11e02				chr19:25033955	5
29	71% protein similarity to: PREDICTED: hypothetical protein isoform 2 [Danio rerio]				chr23:34202814	5
30	Unidentified naq15g07				chr10:18937592	5
31	Danio rerio musashi homolog 1 (Drosophila) (msi1), mRNA Musashi homolog 1 (Drosophila)	541389	NM_001013516	36054	chr8:51940141	4
32	Danio rerio zgc:110159 (zgc:110159), mRNA Zgc:110159	550548	NM_001017850	105609	chr16:41161050	4
33	Danio rerio poly A binding protein, cytoplasmic 1 a (pabpc1a), mRNA Poly A binding protein, cytoplasmic 1 a	606498	NM_001031676	24504	chr16:48345437	4
34	PREDICTED: Danio rerio hypothetical protein LOC100002688 (LOC100002688), mRNA		XM_001342380		Zv7_NA154:10615	4
35	Danio rerio amyloid beta (A4) precursor-like protein 2 (aplp2), mRNA Amyloid beta (A4) precursor-like protein 2	796801	NM_001123012	105839	chr18:41279629	4
36	PREDICTED: Danio rerio similar to interphotoreceptor retinol-binding protein (LOC794630), mRNA Similar to interphotoreceptor retinol-binding protein	794630	XM_001334600	75802 [**]	chr12:1157097	4
37	Danio rerio cathepsin F (ctsf), mRNA Cathepsin F	565588	NM_001077568	97341	chr14:2624652	4
38	Danio rerio glutamate decarboxylase 1 (gad1), mRNA Glutamate decarboxylase 1	378441	NM_194419	81985	chr6:1350617	4
39	Danio rerio zgc:77060 (zgc:77060), mRNA Zgc:77060	431765	NM_001002218	81949	chr25:6129728	4
40	Danio rerio zgc:64196 (zgc:64196), mRNA Zgc:112519 Zgc:154029 SET and MYND domain containing 2b Regulatory factor X, 4 Zgc:92166 Zgc:64196	393391	NM_200419	42986 45957 48486 [**] 78441 87077 87570	chr12:1806891 chr14:46881185 chr2:34268449	4
41	Danio rerio zgc:85981 (zgc:85981), mRNA Zgc:85981	407979	NM_214810	113528	chr1:16982544	4
42	Danio rerio zgc:153150 (zgc:153150), mRNA Zgc:172082 Dephospho-CoA kinase domain containing	751733	NM_001045443	115208 [**] 87869	chr12:32109174 chr20:47858645 chr6:1492529	4
43	Danio rerio serine incorporator 1 (serinc1), mRNA Serine incorporator 1	325690	NM_199727	119646	chr20:41552680	4
44	Danio rerio opsin 1 (cone pigments), short-wave-sensitive 1 (opn1sw1), mRNA Opsin 1 (cone pigments), short-wave-sensitive 1	30582	NM_131319	8194	chr4:14068582	4
45	Zebrafish DNA sequence from clone CH73-95L9 in linkage group 12, complete sequence		CT954331		chr23:37945175	4
46	Danio rerio chromosome 6 open reading frame 83 (H. sapiens) (c6orf83), mRNA Chromosome 6 open reading frame 83 (H. sapiens)	393343	NM_200372	84358	chr1:41864953 chr21:34091646 chr8:54948112	4
47	Unidentified naq12b06				chr1:22879494	4
48	Danio rerio zgc:136346 (zgc:136346), mRNA Zgc:136346	692304	NM_001045276	77561	chr16:30182386	3
49	Danio rerio elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4 (elovl4), mRNA Elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	335732	NM_199972	81952	chr23:36693804	3
50	PREDICTED: Danio rerio similar to xPRL-3 (LOC567691), mRNA Wu:fc14a08	567691	XM_690988	26777	chr16:28101150	3
51	Danio rerio si:ch73-264b7.2 (si:ch73-264b7.2), mRNA Tetratricopeptide repeat domain 39C	553591	NM_001020568	75632	chr22:13949487	3
52	Danio rerio zgc:85969 (zgc:85969), mRNA Zgc:85969	405850	NM_212914	82660	Zv7_NA1983:10738	3
53	PREDICTED: Danio rerio hypothetical protein LOC792612 (LOC792612), mRNA		XM_001331770		chr17:1786607	3
54	PREDICTED: Danio rerio zgc:158528 (zgc:158528), mRNA Zgc:158528	553708	XM_687102	11289	chr3:16496285	3
55	Danio rerio zgc:153219 (zgc:153219), mRNA Zgc:153219 Fas (TNF receptor superfamily, member 6)	767641	NM_001076581	115813 82180	chr13:35458106 chr19:43077921	3
56	Danio rerio glutamate-ammonia ligase (glutamine synthase) a (glula), mRNA Glutamate-ammonia ligase (glutamine synthase) a	100000775	NM_181559	76758	chr2:14363312	3
57	Danio rerio paired box gene 6a (pax6a), mRNA Paired box gene 6a	30567	NM_131304	24244	chr25:15199843	3
58	PREDICTED: Danio rerio similar to RNA binding motif protein 10 like (57.9 kD) (4N366) (LOC565404), mRNA Similar to RNA binding motif protein 10 like (57.9 kD) (4N366)	565404	XM_688684	35328	chr3:35473338	3
59	Danio rerio zgc:101598 (zgc:101598), mRNA Zgc:101598 Similar to phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide	493616	NM_001007776	121201 83827	chr21:12025828	3
60	PREDICTED: Danio rerio similar to Proline-rich nuclear receptor coactivator 2 (LOC565522), mRNA	565522	XM_688802		chr16:39539791	3
61	Danio rerio creatine kinase, brain (ckb), mRNA Creatine kinase, brain	140744	NM_173222	75625	chr20:22182229	3
62	Danio rerio arrestin 3, retinal (X-arrestin), like (arr3l), mRNA Arrestin 3, retinal (X-arrestin), like	436678	NM_001002405	82729	chr10:20816985	3
63	PREDICTED: Danio rerio similar to prominin-like 2 (LOC792548), mRNA		XM_001332059		chr1:17343959	3
64	Zebrafish DNA sequence from clone CH73-110P20, complete sequence CDNA clone IMAGE:6793184		CT990618	122280	Zv7_NA1373:1623 Zv7_NA2:359408 Zv7_NA3176:2544 Zv7_scaffold2490:122556 Zv7_scaffold2518:61883 Zv7_scaffold2532:331857 Zv7_scaffold2561:731039 Zv7_scaffold2641:9925 chr11:17789674 chr13:14827106 chr14:15697497 chr15:40585901 chr16:26626623 chr2:49635730 chr20:36456765 chr21:24501717 chr22:6184872 chr25:30489571 chr3:41952702 chr4:6632978 chr5:64316624 chr6:29484236 chr7:15059686 chr9:28449902	3
65	Danio rerio zgc:136766 (zgc:136766), mRNA	692305	NM_001045277		chr25:17367418	3
66	Danio rerio -antigen; retina and pineal gland (arrestin) (sag), mRNA -antigen; retina and pineal gland (arrestin)	619268	NM_001033749	82000	chr15:45335043	3
67	Danio rerio zgc:172266 (zgc:172266), mRNA Zgc:172266 Zgc:162815	557841	NM_001113583	120331 148929	Zv7_NA1331:2913 chr10:34456389 chr3:43998149	3
68	Danio rerio acidic (leucine-rich) nuclear phosphoprotein 32 family, member E (anp32e), mRNA Acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	406562	NM_213277	33193	chr19:39149615	3
69	PREDICTED: Danio rerio hypothetical LOC565631, transcript variant 1 (LOC565631), mRNA Hypothetical LOC100002387		XM_684669	113485	chr1:9739137	3
70	Danio rerio transmembrane protein 50A (tmem50a), mRNA Transmembrane protein 50A	406850	NM_213529	78492	chr13:42001326	3
71	Danio rerio v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1 (yes1), mRNA V-yes-1 Yamaguchi sarcoma viral oncogene homolog 1 Clusterin-like	407620	NM_001013270	148430 75637	chr2:25802416	3
72	PREDICTED: Danio rerio wu:fi25h02, transcript variant 2 (wu:fi25h02), mRNA Wu:fi25h02	333996	XM_701882	20146	chr2:24912126	3
73	Danio rerio pyruvate dehydrogenase (lipoamide) alpha 1 (pdha1), nuclear gene encoding mitochondrial protein, mRNA Pyruvate dehydrogenase (lipoamide) alpha 1	406702	NM_213393	75566	chr5:13574368	3
74	Danio rerio malate dehydrogenase 1b, NAD (soluble) (mdh1b), mRNA Unc-119 homolog 2 Malate dehydrogenase 1b, NAD (soluble)	335715	NM_199969	94317 9860	chr21:31851406	3
75	Danio rerio si:ch211-236k19.4 (si:ch211-236k19.4), mRNA Claudin j Zgc:158405 Si:ch211-236k19.4 Troponin C, slow	100142649	NM_001122625	122851 66415 86719 87343	chr11:26191587 chr13:10249502 chr2:42916286 chr20:3245310 chr8:51357787	3
76	Danio rerio guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 (gngt1), mRNA Guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1	335656	NM_199967	81940	chr19:37550838	3
77	PREDICTED: Danio rerio hypothetical protein LOC100005675 (LOC100005675), mRNA Similar to NMDA receptor 1	100005675	XM_001340391	83363	chr5:21381830	3
78	Danio rerio transducer of ERBB2, 1a (tob1a), mRNA Transducer of ERBB2, 1a	386629	NM_198363	79310	chr3:15099259	3
79	Danio rerio SET domain containing (lysine methyltransferase) 7 (setd7), mRNA SET domain containing (lysine methyltransferase) 7	436729	NM_001002456	83856	chr14:52069388	3
80	Danio rerio reverse transcriptase (LOC568735), mRNA Cannabinoid receptor 1	568735	NM_001037240	104315	Zv7_NA1340:29760 chr10:32801483 chr2:38903386	3
81	Danio rerio methionine adenosyltransferase II, alpha (mat2a), mRNA Methionine adenosyltransferase II, alpha	323329	NM_212637	132178	chr10:38159830	3
82	Unidentified naq02a08				chr25:3615385	3
83	Unidentified naq30a08				chr21:4189548	3
84	Unidentified naq26g05				chr19:24221411	3
85	Unidentified naq15a07				chr22:21438224	3
86	Unidentified naq13a08				chr23:2471489	3
87	Unidentified naq12c09				chr15:5810005	3
88	Unidentified naq06e11				chr9:36089150	3
89	Unidentified naq02g06				chr19:17573337	3
90	Unidentified naq06c08				Zv7_NA4812:3073 Zv7_scaffold2543:256987	3
91	PREDICTED: Danio rerio hypothetical protein LOC799160 (LOC799160), mRNA Transcribed locus Transcribed locus		XM_001339511	144326 76450	chr13:32743975	2
92	Danio rerio novel protein containing a ChaC-like protein domain (LOC563855), mRNA ChaC, cation transport regulator-like 1 ChaC, cation transport regulator-like 1		NM_001045032	119543 76600	chr20:25301797	2
93	PREDICTED: Danio rerio hypothetical LOC561719, transcript variant 1 (LOC561719), mRNA Transcribed locus Hypothetical LOC561719	561719	XM_698991	142357 36180	chr15:261812	2
94	Danio rerio ADP-ribosylation factor 2 (arf2), mRNA ADP-ribosylation factor 2	399477	NM_201504	75882	chr3:35368255	2
95	Danio rerio si:xx-by187g17.1 (si:xx-by187g17.1), mRNA Hemoglobin alpha adult-1	497162	NM_001033093	76023	chr3:52935439	2
96	Danio rerio glycogenin 1 (gyg1), mRNA Similar to Helicase-like transcription factor (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3) (Sucrose nonfermenting protein 2-like 3) (TNF-response element-binding protein) (P113) Glycogenin 1 Zgc:56208	406831	NM_213510	105912 13604 77657	chr2:20396445	2
97	Danio rerio calmodulin 1b (calm1b), mRNA Calmodulin 1b	368217	NM_200082	132819	chr20:12515887	2
98	Danio rerio prothymosin, alpha (ptma), mRNA Prothymosin, alpha a	335707	NM_194376	105146	chr6:21256999	2
99	Danio rerio opsin 4, like, mRNA (cDNA clone MGC:136728 IMAGE:7043557), complete cds Opsin 4, like	352918	BC116614	24957		2
100	Danio rerio retinal degradation slow 2 (rds2), mRNA Retinal degradation slow 2	58085	NM_131566	81979	chr12:32167069	2

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