Lysine (K)-specific demethylase 5C (KDM5C)

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UGID:2138662 UniGene Hs.631768 Homo sapiens (human) KDM5C

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Lysine (K)-specific demethylase 5C (KDM5C)

SELECTED PROTEIN SIMILARITIES

Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.

Reference Protein		Species	Id(%)	Len(aa)
XP_001249801.1	PREDICTED: jumonji, AT rich interactive domain 1C isoform 2	B. taurus	98.8	1547
NP_001090902.1	jumonji, AT rich interactive domain 1C	S. scrofa	98.6	1515
NP_038696.2	jumonji, AT rich interactive domain 1C (Rbp2 like)	M. musculus	98.4	1550
NP_004644.2	jumonji, AT rich interactive domain 1D isoform 2	H. sapiens	92.8	1531
NP_001116706.1	jumonji, AT rich interactive domain 1C-like	D. rerio	77.5	1561
NP_001086949.1	MGC80445 protein	X. laevis	64.5	124
NP_523486.1	little imaginal discs, isoform A	D. melanogaster	56.7	1637
NP_193773.2	transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein	A. thaliana	51.0	465

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources. [Show more entries with profiles like this]
	GEO profiles:	Experimental gene expression data (Gene Expression Omnibus).
	cDNA Sources:	brain; uncharacterized tissue; stomach; uterus; thymus; embryonic tissue; placenta; prostate; bone marrow; testis; mixed; mammary gland; lymph node; pancreas; cervix; lymph; tonsil; skin; eye; lung; muscle; mouth; blood; intestine; larynx; kidney; trachea; liver; thyroid; ovary; esophagus; spinal cord; nerve; ganglia; connective tissue; bone; heart

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

Chromosome:	X
Map position:	Xp11.22-p11.21
UniSTS entry:	Chr X	PMC311008P3
UniSTS entry:	Chr X	RH93069
UniSTS entry:	Chr X	RH80792
UniSTS entry:	Chr X	RH81091
UniSTS entry:	Chr X	(n/a)
UniSTS entry:	Chr X	DXS1272E
UniSTS entry:	Chr X	PMC24149P1
UniSTS entry:	Chr 22	D11S3114
UniSTS entry:	Chr 11	RH47256

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (12)

BC054499.2	Homo sapiens jumonji, AT rich interactive domain 1C, mRNA (cDNA clone MGC:57577 IMAGE:5492114), complete cds	PA
CR602759.1	full-length cDNA clone CS0DD006YC21 of Neuroblastoma Cot 50-normalized of Homo sapiens (human)
AY927614.1	Homo sapiens mRNA sequence
AY927613.1	Homo sapiens mRNA sequence	P
AY927525.1	Homo sapiens mRNA sequence
NM_004187.2	Homo sapiens jumonji, AT rich interactive domain 1C (JARID1C), mRNA	PA
L25270.1	Human XE169 mRNA, complete cds	P
EF613277.1	Homo sapiens JARID1C protein (JARID1C) mRNA, complete cds, alternatively spliced	PA
AK308077.1	Homo sapiens cDNA, FLJ98025	P
AK304732.1	Homo sapiens cDNA FLJ55294 complete cds, highly similar to Jumonji/ARID domain-containing protein 1C
AF069136.1	Homo sapiens cDNA selection clone ADS56
Z29650.1	H.sapiens SMCX mRNA	P

EST sequences (10 of 435) [Show all sequences]

AI014549.1	Clone IMAGE:1628763	mixed	3' read
AI124733.1	Clone IMAGE:1540045	brain	3' read	P
BX110463.1	Clone IMAGp998B12731_;_IMAGE:322859	skin		P
BX092564.1	Clone IMAGp998O223628_;_IMAGE:1435629	intestine		A
AI221739.1	Clone IMAGE:1842746	mixed	3' read
CB158720.1	Clone L18POOL1n1-13-F09	liver	5' read
AI283506.1	Clone IMAGE:1854668	mixed	3' read
AI300138.1	Clone IMAGE:1902098	kidney	3' read	A
AI351825.1	Clone IMAGE:1947122	uncharacterized tissue	3' read
AI623130.1	Clone IMAGE:2258200	stomach	3' read	A

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria