Collagen, type XI, alpha 1, Homo sapiens

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UGID:914193 UniGene Hs.523446 Homo sapiens (human) COL11A1

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Collagen, type XI, alpha 1 (COL11A1)

SELECTED PROTEIN SIMILARITIES

Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.

Reference Protein		Species	Id(%)	Len(aa)
XP_001076840.1	PREDICTED: similar to Collagen alpha-1(XI) chain precursor	R. norvegicus	93.5	1764
XP_912463.1	PREDICTED: similar to collagen, type XXII, alpha 1, isoform 3	M. musculus	46.1	1348

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	Expression Profile:	View expression levels using UniGene's EST ProfileViewer [Show more entries with profiles like this]
	GEO profiles:	Gene expression profiles in the NCBI Gene Expression Omnibus database
	cDNA Sources:	bone; ear; embryonic tissue; skin; connective tissue; brain; mouth; intestine; muscle; mammary gland; stomach; placenta; uncharacterized tissue; uterus; eye; bone marrow; pancreas; larynx; adrenal gland; mixed; liver; ascites; heart; lung

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

	Chromosome:	1
	Map position:	1p21

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

NM_001854.3	Homo sapiens collagen, type XI, alpha 1 (COL11A1), transcript variant A, mRNA	P
J04177.1	Human alpha-1 type XI collagen (COL11A1) mRNA, complete cds	P
AB208844.1	Homo sapiens mRNA for alpha 1 type XI collagen isoform C preproprotein variant protein	P
BC117697.1	Homo sapiens collagen, type XI, alpha 1, mRNA (cDNA clone MGC:134933 IMAGE:40073305), complete cds	P
NM_080630.2	Homo sapiens collagen, type XI, alpha 1 (COL11A1), transcript variant C, mRNA	P
NM_080629.2	Homo sapiens collagen, type XI, alpha 1 (COL11A1), transcript variant B, mRNA	P
AK299025.1	Homo sapiens cDNA FLJ57066 complete cds, highly similar to Collagen alpha-1(XI) chain precursor	A

EST sequences (10 of 222) [Show all sequences]

R14659.1	Clone IMAGE:35726	brain	5' read
AI038531.1	Clone IMAGE:1658628	embryonic tissue	3' read	A
AI041918.1	Clone IMAGE:1664589	skin	3' read	A
AI042579.1	Clone IMAGE:1665838	skin	3' read	A
AI074420.1	Clone IMAGE:1679225	skin	3' read	A
AI096671.1	Clone IMAGE:1698339	uterus	3' read	A
AI140415.1	Clone IMAGE:1692870	heart	3' read	A
AI147586.1	Clone IMAGE:1696943	uterus	3' read	A
BX109171.1	Clone IMAGp998D21568_;_IMAGE:260324	skin		P
AI167334.1	Clone IMAGE:1682390	skin	3' read	P

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria