Collagen, type III, alpha 1, Homo sapiens

Expression Profile:

View expression levels using UniGene's EST ProfileViewer
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Highly represented in many libraries

GEO profiles:

Gene expression profiles in the NCBI Gene Expression Omnibus database

cDNA Sources:

embryonic tissue; ear; pancreas; uncharacterized tissue; uterus; eye; connective tissue; bone; lung; intestine; placenta; mixed; stomach; brain; heart; mammary gland; skin; kidney; prostate; bladder; mouth; ovary; lymph; spinal cord; ascites; muscle; thymus; nerve; umbilical cord; trachea; thyroid; testis; bone marrow; liver; amniotic fluid; epididymis; pharynx; vascular; adipose tissue; larynx; spleen; esophagus; ganglia; lymph node; adrenal gland; cervix; blood

NCBI

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Finding cDNAs

UGID:238662 UniGene Hs.443625 Homo sapiens (human) COL3A1

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Collagen, type III, alpha 1 (COL3A1)

SELECTED PROTEIN SIMILARITIES

Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.

Reference Protein		Species	Id(%)	Len(aa)
XP_001163848.1	PREDICTED: similar to COL3A1 protein isoform 11	P. troglodytes	100.0	1465
XP_912463.1	PREDICTED: similar to collagen, type XXII, alpha 1, isoform 3	M. musculus	48.3	1185
NP_542990.2	alpha 1 type XIII collagen isoform 4	H. sapiens	47.2	576
NP_647970.1	CG10625 CG10625-PA, isoform A	D. melanogaster	46.2	158
NP_001022663.1	K04H4.1b	C. elegans	46.0	1275

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

	Chromosome:	2
	Map position:	2q31

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (14)

BX649097.1	Homo sapiens mRNA; cDNA DKFZp686M0856 (from clone DKFZp686M0856)	A
NM_000090.3	Homo sapiens collagen, type III, alpha 1 (COL3A1), mRNA
CR608693.1	full-length cDNA clone CS0DE004YG03 of Placenta of Homo sapiens (human)	P
AK021531.1	Homo sapiens cDNA FLJ11469 fis, clone HEMBA1001658
X14420.1	Human mRNA for pro-alpha-1 type 3 collagen	P
AK308010.1	Homo sapiens cDNA, FLJ97958
BC028178.1	Homo sapiens collagen, type III, alpha 1, mRNA (cDNA clone MGC:39848 IMAGE:5405119), complete cds	PA
AK091853.1	Homo sapiens cDNA FLJ34534 fis, clone HLUNG2008333, highly similar to Alpha1 (III) collagen	P
M59227.1	Human alpha-1 collagen type III (COL3A1) mRNA, partial cds	P
S79877.1	COL3A1=type III collagen alpha 1(III) chain {alternatively spliced, exon-17-skipping} [human, type IV Ehlers-Danlos syndrome patient, fibroblast culture, mRNA Mutant, 268 nt]	P
X01655.1	Human mRNA for alpha 1 (III) collagen fragment (aa 892-1023)	P
X07240.1	Human mRNA for prepro alpha1(III) collagen (N-term.)	P
M13146.1	Human alpha-1 type III collagen mRNA, partial cds
X06700.1	Human mRNA 3' region for pro-alpha1(III) collagen	PA

EST sequences (10 of 2537) [Show all sequences]

AA954939.1	Clone IMAGE:1574427	kidney	3' read	P
AA962112.1	Clone IMAGE:1600284	uncharacterized tissue	3' read	A
AA903185.1	Clone IMAGE:1517181	uncharacterized tissue	3' read	A
AA970227.1	Clone IMAGE:1575185	kidney	3' read	A
AA970296.1	Clone IMAGE:1575239	kidney	3' read
AA973529.1	Clone IMAGE:1569218	lung	3' read	A
AA976386.1	Clone IMAGE:1591495	kidney	3' read	A
AA977314.1	Clone IMAGE:1591850	kidney	3' read	PA
AA983478.1	Clone IMAGE:1591631	kidney	3' read	A
AA985401.1	Clone IMAGE:1592818	kidney	3' read	A

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria