Collagen, type V, alpha 1, Homo sapiens

Restricted Expression:

embryoid body [show more like this]

Expression Profile:

View expression levels using UniGene's EST ProfileViewer
[Show more entries with profiles like this]

Highly represented (1.3 pct) in cDNA library dbEST:10663, BT3502.

Highly represented (1.1 pct) in cDNA library dbEST:6561, AN0093.

GEO profiles:

Gene expression profiles in the NCBI Gene Expression Omnibus database

cDNA Sources:

embryonic tissue; pancreas; brain; amniotic fluid; uterus; mixed; spleen; uncharacterized tissue; bone; eye; connective tissue; heart; lung; lymph node; skin; mammary gland; vascular; placenta; intestine; bone marrow; umbilical cord; muscle; ovary; liver; pharynx; stomach; adipose tissue; ganglia; kidney; cervix; testis; trachea; epididymis; ear; prostate; blood; thyroid; nerve; mouth; ascites

NCBI

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Finding cDNAs

UGID:164013 UniGene Hs.210283 Homo sapiens (human) COL5A1

Links

Collagen, type V, alpha 1 (COL5A1)

SELECTED PROTEIN SIMILARITIES

Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.

Reference Protein		Species	Id(%)	Len(aa)
XP_001076840.1	PREDICTED: similar to Collagen alpha-1(XI) chain precursor	R. norvegicus	73.0	1764
NP_647970.1	CG10625 CG10625-PA, isoform A	D. melanogaster	51.7	116

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

	Chromosome:	9
	Map position:	9q34.2-q34.3

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (10)

D90279.1	Homo sapiens mRNA for collagen alpha 1(V) chain, complete cds	P
AK127662.1	Homo sapiens cDNA FLJ45760 fis, clone MESTC1000147, highly similar to Collagen alpha 1(V) chain precursor	P
AK122763.1	Homo sapiens cDNA FLJ16299 fis, clone PLACE6017578
NM_000093.3	Homo sapiens collagen, type V, alpha 1 (COL5A1), mRNA	P
BC091525.1	Homo sapiens cDNA clone IMAGE:30512240	A
AB209864.1	Homo sapiens mRNA for Pro-alpha-1 type V collagen variant protein	P
BC008760.2	Homo sapiens collagen, type V, alpha 1, mRNA (cDNA clone IMAGE:3343931), complete cds	PA
AK057231.1	Homo sapiens cDNA FLJ32669 fis, clone TESTI1000125	P
AB371583.1	Homo sapiens COL5A1 mRNA for collagen type V alpha 1, complete cds, clone: HP06504-ARe79B07	A
BC032405.1	Homo sapiens collagen, type V, alpha 1, mRNA (cDNA clone IMAGE:5209850), with apparent retained intron	A

EST sequences (10 of 616) [Show all sequences]

AA905435.1	Clone IMAGE:1506196	mixed	3' read	A
AA991683.1	Clone IMAGE:1622015	embryonic tissue	3' read	A
R16562.1	Clone IMAGE:129634	mixed	3' read	A
R16620.1	Clone IMAGE:129634	mixed	5' read
AA921913.1	Clone IMAGE:1543542	mixed	3' read	A
AA948576.1	Clone IMAGE:1560478	mixed	3' read	A
AI037863.1	Clone IMAGE:1664675	skin	3' read	A
AI042290.1	Clone IMAGE:1665729	skin	3' read	A
AI052275.1	Clone IMAGE:1670047	brain	3' read	A
AI076713.1	Clone IMAGE:1675543	mixed	3' read	A

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria