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Finding cDNAs
UGID:151887     UniGene Hs.145586     Homo sapiens (human)   COL4A6 Order cDNA clone, Links
Collagen, type IV, alpha 6 (COL4A6)
SELECTED PROTEIN SIMILARITIES
Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.
Reference ProteinSpeciesId(%)Len(aa)
XP_001067473.1 PREDICTED: similar to Collagen alpha-1(IV) chain precursor R. norvegicus 50.9 1661
NP_001022663.1 K04H4.1b C. elegans 49.3 1477

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Expression Profile: View expression levels using UniGene's EST ProfileViewer
[Show more entries with profiles like this]
GEO profiles: Gene expression profiles in the NCBI Gene Expression Omnibus database
cDNA Sources: embryonic tissue; uterus; uncharacterized tissue; esophagus; prostate; eye; mixed; cervix; lung; testis; mammary gland; stomach; brain; heart; placenta; skin; intestine; muscle
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: X
Map position: Xq22
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (15)

BT007228.1 Homo sapiens collagen, type IV, alpha 6 mRNA, complete cds
BC070203.1 Homo sapiens collagen, type IV, alpha 6, mRNA (cDNA clone IMAGE:4274195), complete cds A
CR605243.1 full-length cDNA clone CS0DK009YJ15 of HeLa cells Cot 25-normalized of Homo sapiens (human) P
BC005305.1 Homo sapiens collagen, type IV, alpha 6, mRNA (cDNA clone IMAGE:3951220), complete cds A
BC000874.1 Homo sapiens, Similar to collagen, type IV, alpha 6, clone IMAGE:3461295, mRNA PA
NM_001847.2 Homo sapiens collagen, type IV, alpha 6 (COL4A6), transcript variant A, mRNA A
NM_033641.2 Homo sapiens collagen, type IV, alpha 6 (COL4A6), transcript variant B, mRNA A
EU182215.1 Homo sapiens collagen alpha 6 type IV mRNA, partial cds
BC140855.1 Homo sapiens collagen, type IV, alpha 6, mRNA (cDNA clone MGC:176532 IMAGE:9021723), complete cds
AK098221.1 Homo sapiens cDNA FLJ40902 fis, clone UTERU2004061
AK300502.1 Homo sapiens cDNA FLJ60893 complete cds, highly similar to Collagen alpha-6(IV) chain precursor
AK302734.1 Homo sapiens cDNA FLJ57675 complete cds, highly similar to Collagen alpha-6(IV) chain precursor
L22763.1 Human alpha-6 type IV collagen mRNA, 5' end P
U04845.1 Homo sapiens A type IV collagen (COL4A6) mRNA, complete cds P
D21337.1 Homo sapiens mRNA for collagen, complete cds P

EST sequences (10 of 99) [Show all sequences]

AA910008.1 Clone IMAGE:1525908 mixed 3' read A
CB050016.1 Clone IMAGE:3271775 prostate 3' read A
CB050017.1 Clone IMAGE:3271775 prostate 5' read
BX090415.1 Clone IMAGp998J126068_;_IMAGE:2440811 uterus A
AI273913.1 Clone IMAGE:1979202 stomach 3' read A
AI378422.1 Clone IMAGE:2070789 mixed 3' read
AI680557.1 Clone IMAGE:2322038 prostate 3' read A
R57437.1 Clone F3112 heart 5' read
AI889772.1 Clone IMAGE:2440584 uterus 3' read P
AI889828.1 Clone IMAGE:2440674 uterus 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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