NbLib0125: NEI cow lens unnormalized (nbm)

Last GRIST date: 10/20/2008

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Group#	Description	Entrez Gene Id	GenBank	UniGene (Build Bt #93)	Chromosomal Pos. (BLAT)	Chromosome	Num. Clones
1	Bos taurus crystallin, alpha A (CRYAA), mRNA Crystallin, alpha A	281718	NM_174289	397 [**]	chr1:146257773	1	635
2	Bos taurus crystallin, beta B2 (CRYBB2), mRNA Crystallin, beta B2	287011	NM_174807	398 [**]	chr1:146257868 chr17:68753533	17	549
3	Bos taurus crystallin, beta A1 (CRYBA1), mRNA Crystallin, beta A1	282202	NM_174523	382 [**]	chr19:20560224	19q15	226
4	Bos taurus crystallin, gamma S (CRYGS), mRNA Crystallin, gamma S	281724	NM_174292	1647	chr1:82562738	1	117
5	Bos taurus crystallin, beta A2 (CRYBA2), mRNA Crystallin, beta A2	282203	NM_174524	383	chr2:111335389	2	115
6	Bos taurus crystallin, alpha B (CRYAB), mRNA Crystallin, alpha B	281719	NM_174290	88059	chr15:20478750	15	80
7	Bos taurus crystallin, beta A4 (CRYBA4), mRNA Crystallin, beta A4 Transcribed locus, strongly similar to XP_001927427.1 PREDICTED: similar to Beta-crystallin A4 (Beta-A4 crystallin) [Sus scrofa]	282204	NM_174525	384 98539	chr17:69724392	17 17	74
8	Bos taurus crystallin, beta B3 (CRYBB3), mRNA Crystallin, beta B3	282206	NM_174527	598	chr17:68734989	17	57
9	Bos taurus vimentin (VIM), mRNA Vimentin	280955	NM_173969	11149	chr13:31476765	13q16-q17	36
10	PREDICTED: Bos taurus similar to lengsin, transcript variant 2 (LOC538526), mRNA Glutamate-ammonia ligase (glutamine synthetase) domain containing 1	538526	XM_580916	63331	chr2:306752	2	32
11	Bos taurus crystallin, beta B1 (CRYBB1), mRNA Crystallin, beta B1	282205	NM_174526	78	chr17:69703609	17	31
12	Bos taurus eukaryotic translation elongation factor 1 alpha 1 (EEF1A1), mRNA Eukaryotic translation elongation factor 1 alpha 1 Eukaryotic translation elongation factor 1 alpha 1	282220	NM_174535	63960 64903	chr18:2330563 chr9:12615170 chrUn.004.8067:1949	Un 9	29
13	Bos taurus beaded filament structural protein 2, phakinin (BFSP2), mRNA Beaded filament structural protein 2, phakinin	281645	NM_174248	320	chr1:138144974	Un	26
14	Bos taurus fatty acid binding protein 5 (FABP5), mRNA Fatty acid binding protein 5	281760	NM_174315	22869	chr11:15776215 chr14:41734591	14	24
15	Bos taurus carbonic anhydrase III, muscle specific (CA3), mRNA Carbonic anhydrase III, muscle specific	513212	NM_001034437	49056	chr14:75932470	14	20
16	Bos taurus crystallin, gamma B (CRYGB), mRNA Crystallin, gamma B	281720	NM_001013594	399	chr2:101515526	2	17
17	Bos taurus ferritin, light polypeptide (FTL), mRNA Similar to ferritin L subunit Ferritin, light polypeptide	286861	NM_174792	34052 [] 65259 []	chr1:22882584 chr18:55360052 chr23:34668288	18 18	16
18	Bos taurus major intrinsic protein of lens fiber (MIP), mRNA Major intrinsic protein of lens fiber	280859	NM_173937	4516	chr5:61499341	5	14
19	Bos taurus beaded filament structural protein 1, filensin (BFSP1), mRNA Beaded filament structural protein 1, filensin	281644	NM_174247	170	chr13:37819036	13	14
20	Bos taurus crystallin, zeta (quinone reductase) (CRYZ), mRNA Crystallin, zeta (quinone reductase) Transcribed locus, strongly similar to NP_776450.2 crystallin, zeta [Bos taurus]	281093	NM_174025	151 87297	chr3:74790199	3 3	13
21	Bos taurus phosphoprotein enriched in astrocytes 15 (PEA15), mRNA Phosphoprotein enriched in astrocytes 15	510586	NM_001075456	87235	chr3:10433651	3	13
22	Bos taurus prostaglandin D2 synthase 21kDa (brain) (PTGDS), mRNA Prostaglandin D2 synthase 21kDa (brain)	286858	NM_174791	1645	chr11:109312184	11	13
23	Bos taurus eukaryotic translation elongation factor 1 gamma (EEF1G), mRNA Transcribed locus, strongly similar to NP_001395.1 eukaryotic translation elongation factor 1 gamma [Homo sapiens]	326581	NM_001040487	53400	chr29:42608938 chr8:22813290	8	12
24	Bos taurus ferritin, heavy polypeptide 1 (FTH1), mRNA Ferritin, heavy polypeptide 1	281173	NM_174062	5321	chr29:42118824	29	11
25	PREDICTED: Bos taurus similar to MGC127538 protein (LOC786715), mRNA Hypothetical protein MGC127538 Transcribed locus, strongly similar to XP_001254295.1 PREDICTED: similar to MGC127538 protein [Bos taurus]	786715	XM_001254316	74713 98816	chr2:121911837 chr9:44915722	9 2	11
26	Bos taurus ribosomal protein SA (RPSA), mRNA Ribosomal protein SA	281898	NM_174379	49711	chr22:12886616	22	10
27	PREDICTED: Bos taurus ribosomal protein L21, transcript variant 5 (RPL21), mRNA Ribosomal protein L21	326584	XM_871867	5211	chr12:32615054 chr22:44238181 chrX:23373394	12	9
28	Bos taurus ribosomal protein, large, P0 (RPLP0), mRNA Ribosomal protein, large, P0	286868	NM_001012682	8462	chr17:65831669	17	9
29	Bos taurus ribosomal protein S2 (RPS2), mRNA Ribosomal protein S2	286867	NM_001033613	48814	chr25:2002643	25	8
30	PREDICTED: Bos taurus similar to GRIFIN (LOC528362), mRNA Galectin-related inter-fiber protein	528362	XM_606783	74418	chr25:42671815	25	8
31	Bos taurus tubulin, alpha 1b (TUBA1B), mRNA Tubulin, alpha 1b Tubulin, alpha 1a	539882	NM_001114856	102036 53243	chr5:33740169	5	8
32	Bos taurus brain abundant, membrane attached signal protein 1 (BASP1), mRNA Brain abundant, membrane attached signal protein 1 Transcribed locus, strongly similar to NP_777205.1 brain abundant, membrane attached signal protein 1 [Bos taurus]	286842	NM_174780	4898 89955	chrUn.004.374:54861	Un 20	7
33	Bos taurus polyubiquitin (LOC281370), mRNA Polyubiquitin	281370	NM_174133	2878	chr19:34140776	19	7
34	Bos taurus ribosomal protein S3A (RPS3A), mRNA Ribosomal protein S3A	282053	NM_001034038	14068	chr17:7220819 chrX:72934150	17	7
35	Crystallin, alpha A			397 [**]	chr1:146257799	1	7
36	Bos taurus calcyphosine (CAPS), mRNA Calcyphosine	616482	NM_001076424	19684	chr7:17031032	7	6
37	PREDICTED: Bos taurus guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 (GNB2L1), mRNA	327682	XM_001254598		chr7:39717486		6
38	Bos taurus tumor protein, translationally-controlled 1 (TPT1), mRNA Tumor protein, translationally-controlled 1	326599	NM_001014388	7776	chr10:69119381 chr12:14460230 chr18:1418976	12	6
39	Bos taurus glyceraldehyde-3-phosphate dehydrogenase (GAPDH), mRNA Glyceraldehyde-3-phosphate dehydrogenase	281181	NM_001034034	87389	chr5:10854264	5	6
40	Bos taurus phosphatidylethanolamine binding protein (PBP), mRNA Phosphatidylethanolamine binding protein Transcribed locus, strongly similar to NP_002558.1 prostatic binding protein [Homo sapiens]	431786	NM_001033623	59089 62326	chr17:59996201	17 18	5
41	Bos taurus ribosomal protein L10 (RPL10), mRNA Ribosomal protein L10 Similar to ribosomal protein L10 Similar to ribosomal protein L10	286790	NM_174760	46990 65738 87980	chr1:54126085 chrX:23716768	X 5 13	5
42	Bos taurus ribosomal protein S3 (RPS3), mRNA Ribosomal protein S3	326588	NM_001034047	15460	chr15:54163421	15	5
43	Bos taurus tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide (YWHAH), mRNA Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide Hypothetical LOC780983	282126	NM_174492	101197 88041	chr17:73881019	14	5
44	Bos taurus S100 calcium binding protein A4 (S100A4), mRNA S100 calcium binding protein A4	282343	NM_174595	49733	chr3:18222399	3	5
45	Bos taurus enolase 1, (alpha) (ENO1), mRNA Enolase 1, (alpha)	281141	NM_174049	22783	chr16:41637059	16	5
46	PREDICTED: Bos taurus collagen, type IV, alpha 1 (COL4A1), mRNA Collagen, type IV, alpha 1	282191	XM_580317	32410	chr12:82998957	12	5
47	Bos taurus eukaryotic translation initiation factor 1 (EIF1), mRNA Eukaryotic translation initiation factor 1	509764	NM_001014884	37045	chr19:43267005	19	5
48	Bos taurus Y box binding protein 1 (YBX1), mRNA Y box binding protein 1	287023	NM_174815	5332	chr3:110467814	3	5
49	Bos taurus clone IMAGE:7961454 ornithine decarboxylase antizyme 1-like mRNA, complete cds Ornithine decarboxylase antizyme 1	506973	AY911315	3694	chr7:20001550	7	5
50	Bos taurus ribosomal protein L12 (RPL12), mRNA Ribosomal protein L12 Transcribed locus, strongly similar to XP_415539.1 PREDICTED: hypothetical protein [Gallus gallus]	404133	NM_205797	23981 65761	chr10:85571942	11 10	5
51	Bos taurus secreted protein, acidic, cysteine-rich (osteonectin) (SPARC), mRNA Secreted protein, acidic, cysteine-rich (osteonectin)	282077	NM_174464	48850	chr7:62638909	7	5
52	Bos taurus tudor domain containing 7 (TDRD7), mRNA Tudor domain containing 7	506702	NM_001100309	25103	chr8:65514715	8	5
53	Bos taurus ribosomal protein L13 (RPL13), mRNA Ribosomal protein L13	508221	NM_001015543	22248	chr18:13525620	18	4
54	Bos taurus sorcin (SRI), mRNA Sorcin	508319	NM_001075350	15882	chr4:74781714	4	4
55	Bos taurus stearoyl-CoA desaturase (delta-9-desaturase) (SCD), mRNA Stearoyl-CoA desaturase (delta-9-desaturase)	280924	NM_173959	97115		25	4
56	Bos taurus ribosomal protein S6 (RPS6), mRNA Ribosomal protein S6	508628	NM_001015548	102105	chr2:115539483		4
57	Bos taurus family with sequence similarity 107, member B (FAM107B), mRNA Family with sequence similarity 107, member B	535023	NM_001046393	87967 [**]	chr13:28843553	13	4
58	Bos taurus eukaryotic translation initiation factor 4 gamma, 2 (EIF4G2), mRNA Eukaryotic translation initiation factor 4 gamma, 2	286870	NM_001099859	5471	chr15:40888550	15	4
59	Bos taurus synuclein, gamma (breast cancer-specific protein 1) (SNCG), mRNA Synuclein, gamma (breast cancer-specific protein 1)	281494	NM_174186	251	chr28:41502573	28	4
60	Bos taurus spastic paraplegia 20 (Troyer syndrome) (SPG20), mRNA Spastic paraplegia 20 (Troyer syndrome)	534027	NM_001077996	21619	chr12:24882483	12	4
61	Bos taurus clathrin, heavy chain (Hc) (CLTC), mRNA Clathrin, heavy chain (Hc)	281080	NM_174023	44506	chr19:9896347	19	4
62	Bos taurus ADP-ribosylation factor 2 (ARF2), mRNA ADP-ribosylation factor 4	282601	NM_174689	65529	chr19:47074315	19	4
63	PREDICTED: Bos taurus similar to nexilin (F actin binding protein) (LOC504819), mRNA Transcribed locus, strongly similar to NP_653174.3 nexilin (F actin binding protein) [Homo sapiens]	504819	XM_580994	39777	chr3:71258404	3	4
64	Bos taurus microtubule-associated protein 7 (MAP7), mRNA Microtubule-associated protein 7 Transcribed locus, strongly similar to NP_001095344.1 microtubule-associated protein 7 [Bos taurus]	506766	NM_001101874	45308 97010	chr9:76646577	9	4
65	PREDICTED: Bos taurus hypothetical LOC528123 (LOC528123), mRNA G protein-coupled receptor 177	528123	XM_606535	21227	chr3:82776309	3	4
66	Bos taurus ribosomal protein L23 (RPL23), mRNA Ribosomal protein L23	504876	NM_001035014	48897	chr19:40681636	19	4
67	Bos taurus cyclin G1 (CCNG1), mRNA Similar to cyclin G1 Cyclin G1	281671	NM_001013364	7770 87631	chr25:489687 chr7:75279545	25 7	4
68	Bos taurus actin, gamma 1 (ACTG1), mRNA Actin, gamma 1	404122	NM_001033618	38667 [**]	chr19:52749374	19	4
69	Bos taurus ribosomal protein L7a (RPL7A), mRNA Ribosomal protein L7a	513128	NM_001040520	13580	chr11:108184995	11	4
70	Bos taurus insulin-like growth factor binding protein 7 (IGFBP7), mRNA Insulin-like growth factor binding protein 7	616368	NM_001102300	102084	chr6:75049707		4
71	Bos taurus thioredoxin-like 1 (TXNL1), mRNA Thioredoxin-like 1	509142	NM_001077886	9716	chr24:58172803 chr9:51547020	24	4
72	Unidentified nbm07h06				chr5:61507544		4
73	Bos taurus Josephin domain containing 3 (JOSD3), mRNA Josephin domain containing 3	505533	NM_001037586	56176	chr29:654554	29	3
74	Bos taurus UBA domain containing 1 (UBAC1), mRNA UBA domain containing 1	613652	NM_001076281	9434	chr11:107382496	11	3
75	Bos taurus tubulin, beta 2A (TUBB2A), mRNA Tubulin, beta 2C Tubulin, beta 2A	281555	NM_001003900	102139 5445	chr23:51450092	23	3
76	Bos taurus eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa (EIF2S3), mRNA Eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa	512350	NM_001046117	21351	chrX:73124873	X	3
77	Bos taurus ribosomal protein L11 (RPL11), mRNA Ribosomal protein L11	512745	NM_001075581	19271	chr18:54831211 chr2:133635319	2	3
78	Bos taurus lens intrinsic membrane protein 2, 19kDa (LIM2), mRNA Lens intrinsic membrane protein 2, 19kDa	281282	NM_174102	431	chr18:57357392	18	3
79	Bos taurus ribosomal protein S8 (RPS8), mRNA Ribosomal protein S8	404140	NM_001025317	1034	chr3:108093497	3	3
80	Bos taurus glutathione S-transferase M1 (GSTM1), mRNA Glutathione S-transferase M1	327709	NM_175825	49673	chr3:36374250	3	3
81	Bos taurus NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa (NDUFB8), mRNA NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa	282517	NM_174667	57711	chr26:21688997	26	3
82	Bos taurus NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa (NDUFV2), nuclear gene encoding mitochondrial protein, mRNA Similar to NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor (NADH-ubiquinone oxidoreductase 24 kDa subunit) (NADH dehydrogenase subunit II) NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa	282290	NM_174565	49189 88596	chr24:42923737	24 24	3
83	Bos taurus v-raf-1 murine leukemia viral oncogene homolog 1 (RAF1), mRNA V-raf-1 murine leukemia viral oncogene homolog 1 Makorin ring finger protein 2	521196	NM_001102505	4968 63704 [**]	chr22:58139560	22 22	3
84	Bos taurus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA Eukaryotic translation elongation factor 1 beta 2	520875	NM_001014936	16991	chr2:99568743	2	3
85	Bos taurus RNA binding motif protein 24 (RBM24), mRNA RNA binding motif protein 24	524220	NM_001104985	100389	chrUn.004.3389:9374	Un	3
86	PREDICTED: Bos taurus dehydrogenase 3, dimeric NAPD-prefering (ALDH3), mRNA Aldehyde dehydrogenase 3 family, memberA1	281617	XM_586194	13116	chr19:34796249	19	3
87	Bos taurus HOP homeobox (HOPX), mRNA HOP homeobox	281270	NM_174097	9549	chr6:74539030	6	3
88	Bos taurus ribosomal protein L9 (RPL9), mRNA Ribosomal protein L9 Similar to 60S ribosomal protein L9 Similar to 60S ribosomal protein L9	282884	NM_001024469	48917 70817 87090	chr6:60940519 chr7:51973121 chr8:107153210	6 13 1	3
89	PREDICTED: Bos taurus similar to APPH (LOC785005), mRNA Similar to Amyloid-like protein 2 precursor (Amyloid protein homolog) (APPH) (CDEI box-binding protein) (CDEBP)	785005	XM_001251234	49768	chr29:38010157	29	3
90	PREDICTED: Bos taurus similar to homeobox protein Pitx3 (LOC512000), mRNA Paired-like homeodomain 3	512000	XM_589431	74425	chr26:23077797	26	3
91	Bos taurus adenylate kinase 2 (AK2), mRNA Adenylate kinase 2	280716	NM_173889	946	chr2:124862632	2	3
92	Bos taurus autocrine motility factor receptor (AMFR), mRNA Autocrine motility factor receptor	507541	NM_001045974	20898	chr18:23803115	18	3
93	Bos taurus ribosomal protein S5 (RPS5), mRNA Ribosomal protein S5	506229	NM_001015531	59004	chr18:65984014	18	3
94	PREDICTED: Bos taurus hypothetical LOC522998 (LOC522998), mRNA	522998	XR_028333		chr28:14168019		3
95	PREDICTED: Bos taurus similar to Spectrin beta chain, brain 1 (Spectrin, non-erythroid beta chain 1) (Beta-II spectrin) (Fodrin beta chain), transcript variant 1 (LOC526027), mRNA Spectrin, beta, non-erythrocytic 1	526027	XM_588094	48647	chr11:38819531	11	3
96	Bos taurus proteasome (prosome, macropain) subunit, alpha type, 6 (PSMA6), mRNA Proteasome (prosome, macropain) subunit, alpha type, 6	507213	NM_001045962	15837	chr21:46349757	21	3
97	Bos taurus ribosomal protein S9 (RPS9), mRNA Ribosomal protein S9	533892	NM_001101152	52718	chr18:63610474	18	3
98	Bos taurus ribosomal protein S4, Y-linked 2 (RPS4Y2), mRNA Ribosomal protein S4, Y-linked 2	614241	NM_001035445	65280	chr9:43694087 chrX:47881150	Un	3
99	Bos taurus protein-L-isoaspartate (D-aspartate) O-methyltransferase (PCMT1), mRNA Protein-L-isoaspartate (D-aspartate) O-methyltransferase	613854	NM_001079617	22615	chr9:90109588	9	3
100	Bos taurus muscleblind-like 2 (Drosophila) (MBNL2), mRNA Muscleblind-like 2 (Drosophila)	527679	NM_001099710	11788	chr12:72119810	12	3

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