NbLib0096: Harvard mouse retina unnormalized (nat)

Last GRIST date: 09/11/2008

View this library: Full List \| Indexed by Chromosomal Position \| Indexed by GO Term \| Tab Delimited	Understanding NEIBank Data
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Group#	Description	Entrez Gene Id	GenBank	UniGene (Build Mm #175)	Chromosomal Pos. (BLAT)	Chromosome (UniGene)	Num. Clones
1	Mus musculus eukaryotic translation elongation factor 1 alpha 1 (Eef1a1), mRNA Eukaryotic translation elongation factor 1 alpha 1 Eukaryotic translation elongation factor 1 alpha 1	13627	NM_010106 GeneNetwork	138471 360075	chr2:40411566 chr9:78327697	9 E1 9 E1	17
2	Mus musculus FERM domain containing 6 (Frmd6), mRNA FERM domain containing 6	319710	NM_028127 GeneNetwork	2962	chr12:72002317	12 C2-C3	16
3	Unidentified 329_t3_050				chr14:64326376		16
4	Unidentified 159_m13f_056				chr9:40893961		13
5	Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330410L22 product:hypothetical protein, full insert sequence RIKEN cDNA E330009J07 gene	243780	AK134551 GeneNetwork	333006	chr6:40351781	6 B1	10
6	Mus musculus glyceraldehyde-3-phosphate dehydrogenase (Gapdh), mRNA Glyceraldehyde-3-phosphate dehydrogenase Glyceraldehyde-3-phosphate dehydrogenase Glyceraldehyde-3-phosphate dehydrogenase	14433	NM_008084 GeneNetwork	304088 343110 458138	chr1:15259093 chr10:33528268 chr11:26687242 chr13:99172262 chr15:4835729 chr17:14846959 chr2:11330870 chr3:139312952 chr4:57384038 chr5:96291342 chr6:83824586 chr7:59002676 chr8:60029708 chrX:77439155 chrY_random:25802246	6 F2 6 F2 6 F2	10
7	Mus musculus aldolase 1, A isoform (Aldoa), mRNA Aldolase A, fructose-bisphosphate	11674	NM_007438 GeneNetwork	275831	chr7:133940156	7 F4	10
8	Mus musculus pleiotrophin (Ptn), mRNA Pleiotrophin	19242	NM_008973 GeneNetwork	279690	chr6:36665124	6 B1\|6 13.5 cM	9
9	Mus musculus transient receptor potential cation channel, subfamily M, member 3 (Trpm3), transcript variant 1, mRNA Transient receptor potential cation channel, subfamily M, member 3	226025	NM_001035239 GeneNetwork	440339	chr19:22767275	19 B	9
10	Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 (Ddx5), mRNA DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	13207	NM_007840 GeneNetwork	220038	chr11:106647783	11 E2\|11 63.0 cM	9
11	Mus musculus dickkopf homolog 3 (Xenopus laevis) (Dkk3), mRNA Dickkopf homolog 3 (Xenopus laevis)	50781	NM_015814 GeneNetwork	55143	chr7:119260276	7 F1	9
12	Mus musculus H3 histone, family 3B (H3f3b), mRNA Transcribed locus, strongly similar to XP_956003.1 histone H3 [Neurospora crassa OR74A] H3 histone, family 3B	15081	NM_008211 GeneNetwork	18516 371563	chr11:115884509	11 E2 11 E2	8
13	Unidentified 589_t3_026				chr19:16397086		8
14	Mus musculus amyloid beta (A4) precursor-like protein 1 (Aplp1), mRNA Amyloid beta (A4) precursor-like protein 1	11803	NM_007467 GeneNetwork	2381	chr7:31220279	7 B1\|7 8.0 cM	7
15	Mus musculus chromobox homolog 6 (Cbx6), mRNA Chromobox homolog 6	494448	NM_028763 GeneNetwork	38438	chr15:79656490	15 E1	7
16	Mus musculus calcium channel, voltage-dependent, gamma subunit 5 (Cacng5), mRNA Calcium channel, voltage-dependent, gamma subunit 5	140723	NM_080644 GeneNetwork	87663	chr11:107737295	11 E1	7
17	Mus musculus mRNA for ganglioside-induced differentiation associated protein 6 Ganglioside-induced differentiation-associated-protein 6	14551	Y17855 GeneNetwork	453134	chr4:88078955	4	7
18	Mus musculus WNK lysine deficient protein kinase 1 (Wnk1), mRNA WNK lysine deficient protein kinase 1	232341	NM_198703 GeneNetwork	333349	chr6:119893629	6 F1	7
19	Mus musculus apolipoprotein E (Apoe), mRNA Apolipoprotein E	11816	NM_009696 GeneNetwork	305152	chr7:20281619	7 A3\|7 4.0 cM	7
20	Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130080B05 product:unclassifiable, full insert sequence Transcribed locus	192196	AK048581 GeneNetwork	470909	chr6:38506332	6 B1	7
21	Deoxynucleotidyltransferase, terminal, interacting protein 1			440009	chr2:164592255	2 H3	7
22	Mus musculus BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae) (Brf1), mRNA BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)	72308	NM_028193 GeneNetwork	196721	chr12:114197581	12 F1	6
23	Mus musculus N-myc downstream regulated gene 4 (Ndrg4), mRNA N-myc downstream regulated gene 4	234593	NM_145602 GeneNetwork	29846	chr8:98238267	8 D1	6
24	Mus musculus Yip1 domain family, member 5 (Yipf5), mRNA Yip1 domain family, member 5	67180	NM_023311 GeneNetwork	270382	chr18:40365211	18 B3	6
25	Mus musculus peptidylprolyl isomerase A (Ppia), mRNA CDNA clone IMAGE:1245890 Peptidylprolyl isomerase A	268373	NM_008907 GeneNetwork	473863 5246	chr9:96796056	11 A1\|11 1.0 cM	6
26	Mus musculus predicted gene, EG433182 (EG433182), mRNA Transcribed locus, strongly similar to NP_001091239.1 hypothetical protein LOC100037034 [Xenopus laevis] Enolase 1, alpha non-neuron	433182	NM_001025388 GeneNetwork	372389 [] 70666 []	chr18:48206418 chr2:80677305 chr4:149621944	4 E2 4 E2	6
27	Mus musculus ribosomal protein S10 (Rps10), mRNA Transcribed locus, strongly similar to XP_001064912.1 PREDICTED: similar to ribosomal protein S10 [Rattus norvegicus] Transcribed locus, strongly similar to XP_001064912.1 PREDICTED: similar to ribosomal protein S10 [Rattus norvegicus] Transcribed locus, strongly similar to XP_001064912.1 PREDICTED: similar to ribosomal protein S10 [Rattus norvegicus] Ribosomal protein S10	67097	NM_025963 GeneNetwork	275810 331214 383217 475649	chr16:20822162 chr17:27767379	16 3 17 B1 17 B1	6
28	Mus musculus tetraspanin 13 (Tspan13), mRNA Tetraspanin 13	66109	NM_025359 GeneNetwork	254663	chr12:36748401	12 B2	6
29	Mus musculus sphingosine phosphate lyase 1 (Sgpl1), mRNA Sphingosine phosphate lyase 1	20397	NM_009163 GeneNetwork	412319	chr10:60562269	10 B4\|10 32.0 cM	6
30	Mus musculus calcium binding protein 5 (Cabp5), mRNA Calcium binding protein 5	29865	NM_013877 GeneNetwork	103669	chr7:13990762	7 A2	6
31	Mus musculus glutaredoxin 5 homolog (S. cerevisiae) (Glrx5), mRNA Transcribed locus, weakly similar to XP_960860.1 monothiol glutaredoxin-5, mitochondrial precursor [Neurospora crassa OR74A] Glutaredoxin 5 homolog (S. cerevisiae)	73046	NM_028419 GeneNetwork	29128 475887	chr12:106270913	12 E 12 E	6
32	Mus musculus aldo-keto reductase family 1, member A4 (aldehyde reductase) (Akr1a4), mRNA Aldo-keto reductase family 1, member A4 (aldehyde reductase)	58810	NM_021473 GeneNetwork	30085	chr4:116312476	4 C7	6
33	Transcribed locus			87260	chr5:139812703	5	6
34	PREDICTED: Mus musculus WD repeat domain 89, transcript variant 1 (Wdr89), mRNA WD repeat domain 89	72338	XM_001001795 GeneNetwork	341719	chr5:107928387 chr9:53625840	12 C3	5
35	Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310015K15 product:hypothetical protein, full insert sequence CDNA clone IMAGE:4035590	19291	AK009365 GeneNetwork	296150	chr11:6368446	11 A1\|11 3.0 cM	5
36	Mus musculus lactate dehydrogenase A (Ldha), mRNA Lactate dehydrogenase A	16828	NM_010699 GeneNetwork	29324	chr7:54103020	7 B4\|7 23.5 cM	5
37	Mus musculus GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus (Gnas), transcript variant 1, mRNA GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	14683	NM_010309 GeneNetwork	125770	chr2:174171212	2 E1-H3\|2 104.0 cM	5
38	Mus musculus rosbin, round spermatid basic protein 1 (Rsbn1), mRNA Rosbin, round spermatid basic protein 1	229675	NM_172684 GeneNetwork	29366	chr3:103769960	3 F2.2	5
39	Mus musculus small nuclear ribonucleoprotein N (Snrpn), transcript variant 1, mRNA Small nuclear ribonucleoprotein N	20646	NM_013670 GeneNetwork	274995 [**]	chr7:67130834	7 C\|7 29.0 cM	5
40	Mus musculus pyruvate kinase, muscle (Pkm2), mRNA Pyruvate kinase, muscle	18746	NM_011099 GeneNetwork	326167	chr9:59526534	9 B\|9 52.0 cM	5
41	Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430020E10 product:hypothetical protein, full insert sequence Transcribed locus Transcribed locus	105727	AK162429 GeneNetwork	430778 475753	chr15:96402858	15 15	5
42	Mus musculus enolase 2, gamma neuronal (Eno2), mRNA Enolase 2, gamma neuronal	13807	NM_013509 GeneNetwork	3913	chr6:124710382	6 F2\|6 60.21 cM	5
43	Mus musculus adult male colon cDNA, RIKEN full-length enriched library, clone:9030605K01 product:oxysterol binding protein-like 9, full insert sequence Oxysterol binding protein-like 9		AK162307 GeneNetwork	366315	chr4:108753913	4 C7	5
44	Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0035F09 product:DEAD (Asp-Glu-Ala-Asp) box polypeptide 55, full insert sequence DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	67848	AK167149 GeneNetwork	281601	chr5:125005535	5 F	5
45	Mus musculus tripeptidyl peptidase I (Tpp1), mRNA Tripeptidyl peptidase I	12751	NM_009906 GeneNetwork	20837	chr7:112895515	7 E3\|7 50.0 cM	5
46	Mus musculus translocase of outer mitochondrial membrane 40 homolog-like (yeast) (Tomm40l), nuclear gene encoding mitochondrial protein, mRNA Translocase of outer mitochondrial membrane 40 homolog-like (yeast) Nuclear receptor subfamily 1, group I, member 3	641376	NM_001037170 GeneNetwork	288374 3077	chr1:173147933	1 H3 1 H3\|1 92.6 cM	5
47	Mus musculus frequenin homolog (Drosophila) (Freq), mRNA Frequenin homolog (Drosophila)	14299	NM_019681 GeneNetwork	249318	chr2:31139700	2 B	5
48	Mus musculus chimerin (chimaerin) 1 (Chn1), transcript variant 1, mRNA Chimerin (chimaerin) 1	108699	NM_175752 GeneNetwork	257073	chr2:73497787	2 C3	5
49	PREDICTED: Mus musculus similar to CKLF-like MARVEL transmembrane domain containing 3 (LOC100046883), mRNA Predicted gene, ENSMUSG00000051554	100046883	XM_001476984 GeneNetwork	29658	chr8:106874002	8	5
50	Mus musculus WD repeat domain 5 (Wdr5), mRNA WD repeat domain 5	140858	NM_080848 GeneNetwork	28265	chr2:27389341	2 A3	5
51	Mus musculus triosephosphate isomerase 1 (Tpi1), mRNA Triosephosphate isomerase 1	21991	NM_009415 GeneNetwork	4222	chr6:124762705	6 F2\|6 60.2 cM	5
52	Mus musculus golgi coiled coil 1 (Gcc1), mRNA Golgi coiled coil 1	74375	NM_028900 GeneNetwork	332950	chr6:28367169	6 A3	5
53	Mus musculus calbindin 2 (Calb2), mRNA Calbindin 2	12308	NM_007586 GeneNetwork	2755	chr8:112669549	8 E1	5
54	Mus musculus ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) (Elavl3), mRNA ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) Transcribed locus	15571	NM_010487 GeneNetwork	390167 472428	chr9:21822220	9 A3\|9 5.0 cM 9 A3\|9 5.0 cM	5
55	Mus musculus calmodulin regulated spectrin-associated protein 1 (Camsap1), mRNA Calmodulin regulated spectrin-associated protein 1	227634	NM_001115076 GeneNetwork	36834	chr2:25785039	2 A3	5
56	Solute carrier family 6 (neurotransmitter transporter, taurine), member 6			395650	chr6:91707289	6 D1\|6 38.2 cM	5
57	Unidentified 522_t3_032				chr3:8937007		5
58	93% protein similarity to: oculocerebrorenal syndrome of Lowe [Mus musculus]				chr6:149402881		5
59	Mus musculus adult male brain cDNA, RIKEN full-length enriched library, clone:3632456C13 product:CDA08-like protein homolog [Rattus norvegicus], full insert sequence Integrin alpha FG-GAP repeat containing 1	71927	AK132242 GeneNetwork	334685	chr8:88241685	8 C4\|8 39.0 cM	4
60	Mus musculus guanine nucleotide binding protein (G protein), gamma 3 (Gng3), mRNA Guanine nucleotide binding protein (G protein), gamma 3	14704	NM_010316 GeneNetwork	329700 [**]	chr19:8912304	19 A\|19 4.0 cM	4
61	Mus musculus ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit (Atp5b), nuclear gene encoding mitochondrial protein, mRNA ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	11947	NM_016774 GeneNetwork	238973	chr10:127522615	10 D3	4
62	Mus musculus ATP-binding cassette, sub-family A (ABC1), member 8a (Abca8a), mRNA ATP-binding cassette, sub-family A (ABC1), member 8a	217258	NM_153145 GeneNetwork	344148	chr11:109887469	11	4
63	Mus musculus calmodulin 1 (Calm1), mRNA Calmodulin 1	12313	NM_009790 GeneNetwork	285993	chr12:101441824	12 E	4
64	Mus musculus heat shock protein 90kDa alpha (cytosolic), class B member 1 (Hsp90ab1), mRNA Heat shock protein 90kDa alpha (cytosolic), class B member 1	15516	NM_008302 GeneNetwork	2180	chr17:45708493	17 B3\|17 15.0 cM	4
65	Mus musculus poly (ADP-ribose) polymerase family, member 8 (Parp8), mRNA Poly (ADP-ribose) polymerase family, member 8	52552	NM_001081009 GeneNetwork	274466	chr13:117681863	13 D2.3\|13 71.0 cM	4
66	Mus musculus ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 (St8sia3), mRNA ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	20451	NM_009182 GeneNetwork	252110	chr18:64434840	18 E1	4
67	Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230340L02 product:unclassifiable, full insert sequence CUG triplet repeat, RNA binding protein 1	13046	AK080832 GeneNetwork	393354	chr2:90858994	2 E1\|2 47.5 cM	4
68	Mus musculus centaurin, gamma 2 (Centg2), transcript variant 2, mRNA Centaurin, gamma 2	347722	NM_001037136 GeneNetwork	291135	chr1:91791322	1 D	4
69	Mus musculus transmembrane protein 55b (Tmem55b), mRNA Transmembrane protein 55b	219024	NM_001033271 GeneNetwork	239117	chr14:51547225	14 C1	4
70	Mus musculus testis enhanced gene transcript (Tegt), mRNA Testis enhanced gene transcript	110213	NM_026669 GeneNetwork	16769	chr15:99239581	15 F3\|15 56.8 cM	4
71	Mus musculus poly(rC) binding protein 2 (Pcbp2), transcript variant 1, mRNA Poly(rC) binding protein 2	18521	NM_001103165 GeneNetwork	236513	chr15:102304560	15 F1\|15 61.7 cM	4
72	Mus musculus ribosomal protein S27a (Rps27a), transcript variant 2, mRNA Predicted gene, EG619900 Ribosomal protein S27a	78294	NM_001033865 GeneNetwork	350435 458088	chr11:29445846 chrUn_random:4677007	9 E2 11 A3.3	4
73	Mus musculus cDNA sequence BC017647 (BC017647), mRNA CDNA sequence BC017647	216971	NM_145430 GeneNetwork	119387	chr11:77970015	11 B5	4
74	Mus musculus calcineurin binding protein 1 (Cabin1), mRNA Calcineurin binding protein 1 RIKEN cDNA A930034L06 gene	104248	NM_172549 GeneNetwork	257404 294494	chr10:75212787 chr2:158208239	10 C1\|10 40.7 cM 2 H1	4
75	Mus musculus transmembrane protein 59 (Tmem59), mRNA Transmembrane protein 59	56374	NM_029565 GeneNetwork	291192	chr4:106851370	4 51.8 cM	4
76	Mus musculus metal response element binding transcription factor 1 (Mtf1), mRNA Metal response element binding transcription factor 1	17764	NM_008636 GeneNetwork	272397	chr4:124516093	4 D1\|4 58.3 cM	4
77	Mus musculus RNA binding motif protein 5 (Rbm5), mRNA RNA binding motif protein 5 Transcribed locus, moderately similar to XP_001073543.1 PREDICTED: similar to RNA binding motif protein 5 [Rattus norvegicus]	83486	NM_148930 GeneNetwork	259197 474568	chr9:107646559	9 F1 9 F1	4
78	Mus musculus special AT-rich sequence binding protein 1 (Satb1), mRNA Special AT-rich sequence binding protein 1	20230	NM_009122 GeneNetwork	311655	chr17:51914678	17 C	4
79	Mus musculus sarcolemma associated protein (Slmap), mRNA Sarcolemma associated protein	83997	NM_032008 GeneNetwork	36769	chr14:27234114	14 B	4
80	Mus musculus cystatin C (Cst3), mRNA Cystatin C	13010	NM_009976 GeneNetwork	4263	chr2:148697587	2 G3\|2 84.0 cM	4
81	Mus musculus voltage-dependent anion channel 1 (Vdac1), mRNA Voltage-dependent anion channel 1	22333	NM_011694 GeneNetwork	3555	chr11:52174601	11 B1.3\|11 29.0 cM	4
82	Mus musculus synuclein, beta (Sncb), mRNA Synuclein, beta	104069	NM_033610 GeneNetwork	200843	chr13:54860336	13 B1\|13 35.0 cM	4
83	Mus musculus ornithine decarboxylase antizyme 1 (Oaz1), mRNA Transcribed locus Ornithine decarboxylase antizyme 1	18245	NM_008753 GeneNetwork	328806 398119	chr17:17482240	17 10 C1\|10 43.0 cM	4
84	Mus musculus adult female vagina cDNA, RIKEN full-length enriched library, clone:9930020O12 product:unclassifiable, full insert sequence Low density lipoprotein receptor class A domain containing 3		AK036873 GeneNetwork	475700	chr2:101977419		4
85	Mus musculus RIKEN cDNA 3110040N11 gene (3110040N11Rik), mRNA RIKEN cDNA 3110040N11 gene	67290	NM_026077 GeneNetwork	248391	chr7:88931020	7 D3	4
86	Mus musculus methyl CpG binding protein 2 (Mecp2), transcript variant 1, mRNA Methyl CpG binding protein 2	17257	NM_001081979 GeneNetwork	131408	chrX:71275094	X A7.3\|X 29.6 cM	4
87	Mus musculus KCNA2 (Kcna2) mRNA, 3' UTR KCNA2 (Kcna2) mRNA, 3' UTR		EF490431 GeneNetwork	39285	chr3:106910914	3	4
88	Mus musculus protein kinase C binding protein 1 (Prkcbp1), mRNA Protein kinase C binding protein 1	228880	NM_027230 GeneNetwork	227598	chr2:165610801	2 H3	4
89	Mus musculus mRNA for mKIAA0392 protein Ectonucleoside triphosphate diphosphohydrolase 4	67464	AB093238 GeneNetwork	291443	chr14:69980215	14 D2	4
90	Mus musculus tetratricopeptide repeat domain 5 (Ttc5), transcript variant 1, mRNA Tetratricopeptide repeat domain 5	219022	NM_001080949 GeneNetwork	276362	chr14:51391877 chr3:128657286	14 C1	4
91	Mus musculus thymosin, beta 10 (Tmsb10), mRNA Thymosin, beta 10	19240	NM_001039392 GeneNetwork	3532	chr3:86475671 chr7:25647345	6 C1	4
92	Mus musculus RIKEN cDNA 4733401H18 gene (4733401H18Rik), mRNA RIKEN cDNA 4733401H18 gene	66706	NM_023247 GeneNetwork	29471	chr9:108468196	9 F2	4
93	PREDICTED: Mus musculus similar to H3 histone, family 3A (LOC640877), mRNA Predicted gene, EG623365 H3 histone, family 3A CDNA clone IMAGE:3592158	640877	XM_918075 GeneNetwork	138832 315189 [**] 322735	chr13:70146106 chr7:73335456	1 D2.3 1 D2.3 1 D2.3	4
94	Mus musculus synaptotagmin I (Syt1), mRNA Synaptotagmin I	20979	NM_009306 GeneNetwork	289702	chr10:107935994	10 D1\|10 58.0 cM	4
95	Mus musculus neurogenic differentiation 4 (Neurod4), mRNA Neurogenic differentiation 4	11923	NM_007501 GeneNetwork	10695	chr10:129705939	10 D3\|10 72.0 cM	4
96	Mus musculus guanylate cyclase activator 1a (retina) (Guca1a), mRNA Guanylate cyclase activator 1a (retina) Transcribed locus	14913	NM_008189 GeneNetwork	16224 458920	chr17:47537244	17 D 17	4
97	Mus musculus tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide (Ywhaq), mRNA Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide Similar to Ywhaq protein	22630	NM_011739 GeneNetwork	289630 458320	chr13:13324625 chr4:69909870	12 A1.3 12 A1.3	4
98	Mus musculus NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1 (Ndufc1), mRNA NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1	66377	NM_025523 GeneNetwork	331007	chr3:51209388	3 D	4
99	Unidentified nat07e09				chr4:102461229		4
100	80% protein similarity to: rCG63686 [Rattus norvegicus]				chr1:134326586 chrX:160678264		4

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