NbLib0063: NEI rat retina unnormalized (hf,hg)

Last GRIST date: 10/08/2008

Related Publication: Gene Expression Profile of the Rat Eye Iridocorneal Angle: NEIBank Expressed Sequence Tag Analysis. Ahmed F, Torrado M, Zinovieva RD, Senatorov VV, Wistow G, Tomarev SI. Invest Ophthalmol Vis Sci. 2004.

View this library: Full List \| Indexed by Chromosomal Position \| Indexed by GO Term \| Tab Delimited	Understanding NEIBank Data
[**] This UniGene associated with another RefSeq or GenBank in this table. Click to display.	View All Data \| << Previous Page \| Next Page >>

Group#	Description	Entrez Gene Id	GenBank	UniGene (Build Rn #176)	Chromosomal Pos. (BLAT)	Chromosome (UniGene)	Num. Clones
1	Rattus norvegicus rhodopsin (Rho), mRNA Rhodopsin	24717	NM_033441	92530 [**]	chr4:152057835	4q42	129
2	Rattus norvegicus guanine nucleotide binding protein, alpha transducing 1 (predicted) (Gnat1_predicted), mRNA Guanine nucleotide binding protein, alpha transducing 1	363143	NM_001108780	8781	chr8:112927888	8q32	35
3	Rattus norvegicus receptor accessory protein 6 (Reep6), mRNA Receptor accessory protein 6	362835	NM_001013218	9353	chr7:10887870	7q11	19
4	Rattus norvegicus neural retina leucine zipper gene (predicted) (Nrl_predicted), mRNA Neural retina leucine zipper gene	290221	NM_001106036	19691	chr15:33652111	15p13	9
5	Rattus norvegicus glyceraldehyde-3-phosphate dehydrogenase (Gapdh), mRNA Transcribed locus, strongly similar to NP_002037.2 glyceraldehyde-3-phosphate dehydrogenase [Homo sapiens] Glyceraldehyde 3-phosphate dehydrogenase pseudogene	24383	NM_017008	101713 91450	chr4:161283737 chr5:117080561	4 4q42	9
6	Rattus norvegicus ribosomal protein L13 (Rpl13), mRNA Transcribed locus, strongly similar to NP_150254.1 ribosomal protein L13 [Homo sapiens] Transcribed locus, strongly similar to NP_150254.1 ribosomal protein L13 [Homo sapiens] Ribosomal protein L13	81765	NM_031101	103168 156566 908	chr10:40386498 chr19:53437872 chr8:5410237 chrUn:446994	14 8 19q12	8
7	Rattus norvegicus rod outer segment membrane protein 1 (Rom1), mRNA Rod outer segment membrane protein 1	309201	NM_001009690	145021	chr1:211605567	1q43	8
8	Rattus norvegicus ferritin, heavy polypeptide 1 (Fth1), mRNA Ferritin heavy chain 1	25319	NM_012848	54447	chr1:212430437	1q43	8
9	Rattus norvegicus retinal S-antigen (Sag), mRNA Retinal S-antigen	25539	NM_013023	9856	chr9:86759903	9q35	7
10	Rattus norvegicus Y box protein 1 (Ybx1), mRNA Y box protein 1 Y box protein 1	500538	NM_031563	110976 214692	chr1:175179971 chr5:139863891	5q36 5q36	7
11	Rattus norvegicus UNC-119 homolog (C. elegans) (Unc119), mRNA UNC-119 homolog (C. elegans)	29402	NM_017188	1609	chr10:64286869	10q25	7
12	Rattus norvegicus glycoprotein, synaptic 2 (Gpsn2), mRNA Glycoprotein, synaptic 2 Similar to glycoprotein, synaptic 2	191576	NM_138549	107358 154889	chr19:26232668	19q11 1q11	7
13	Rattus norvegicus solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 (Slc17a7), mRNA Solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7	116638	NM_053859	10267	chr1:95651572	1q22	6
14	Rattus norvegicus oxysterol binding protein 2 (predicted) (Osbp2_predicted), mRNA Oxysterol binding protein 2	305475	NM_001107232	40484	chr14:84350466	14q21	6
15	Rattus norvegicus recoverin (Rcvrn), mRNA Recoverin	140936	NM_080901	38641	chr10:54409031	10q24	6
16	Rattus norvegicus polyubiquitin (Ubb), mRNA Ubiquitin B	192255	NM_138895	1253	chr10:48738512	10q23	6
17	Rattus norvegicus basigin (Bsg), transcript variant 2, mRNA Basigin	25246	NM_012783	2269	chr7:11508959	7q11	5
18	Rattus norvegicus ribosomal protein S2 (Rps2), mRNA Similar to 40S ribosomal protein S2 Ribosomal protein S2	83789	NM_031838	197337 2115	chr10:13975495	9q34 10q12	5
19	Rattus norvegicus tubulin, alpha 1A (Tuba1a), mRNA Tubulin, alpha 1C Tubulin, alpha 1B	64158	NM_022298	154526 99661	chr7:137730474 chrUn:441975	7q36 7q36	5
20	Rattus norvegicus retinal degeneration, slow (Rds), mRNA Peripherin 2	25534	NM_013021	48882	chr9:9251572	9q12	5
21	Rattus norvegicus stathmin-like 3 (Stmn3), mRNA Stathmin-like 3	29246	NM_024346	14961	chr3:170447077	3q43	5
22	Rattus norvegicus glucose phosphate isomerase (Gpi), mRNA Glucose phosphate isomerase	292804	NM_207592	84435	chr1:86662587	1q21	5
23	Rattus norvegicus calpain, small subunit 1 (Capns1), mRNA Calpain, small subunit 1	29156	NM_017118	3430	chr1:85519559	1q21	4
24	Rattus norvegicus ornithine decarboxylase antizyme 1 (Oaz1), mRNA Ornithine decarboxylase antizyme 1	25502	NM_139081	266	chr7:10395009	7q11	4
25	Rattus norvegicus ddx5 gene (Ddx5), mRNA DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	287765	NM_001007613	162208	chr10:96136485	10q32.1	4
26	Rattus norvegicus similar to zinc finger protein 385 (LOC685474), mRNA Zinc finger protein 385A	685474	NM_001109470	179527	chr7:142223272	7q36	4
27	Rattus norvegicus parathymosin (Ptms), mRNA Parathymosin	83801	NM_031975	3609	chr4:161041716	4q42	4
28	Rattus norvegicus ribosomal protein L13A (Rpl13a), mRNA Ribosomal protein L13A	317646	NM_173340	92211	chr1:95600819 chr17:29960688	1q22	4
29	Rattus norvegicus apolipoprotein E (Apoe), mRNA Apolipoprotein E	25728	NM_138828	32351	chr1:79004122	1q21	4
30	Rattus norvegicus aldolase A (Aldoa), mRNA Aldolase A, fructose-bisphosphate	24189	NM_012495	1774	chr1:185970658	1q36	4
31	Rattus norvegicus actin, beta (Actb), mRNA Actin, beta	81822	NM_031144	94978	chr12:12047105	12p11	4
32	Rattus norvegicus ribosomal protein L10A (Rpl10a), mRNA Similar to ribosomal protein L10a Ribosomal protein L10A	81729	NM_031065	192843 2262	chr20:6569599 chr4:4988551	5q36 20p12	4
33	Rattus norvegicus enolase 2, gamma (Eno2), mRNA Enolase 2, gamma, neuronal	24334	NM_139325	10828	chr4:160895622	4q42	4
34	Rattus norvegicus retbindin (predicted) (Rtbnd_predicted), mRNA Retbindin	304667	NM_001107165	42054	chr19:24857033	19q11	4
35	Rattus norvegicus calmodulin 1 (Calm1), mRNA Calmodulin 1	24242	NM_031969	4166	chr6:124477542	6q31-q32	4
36	Rattus norvegicus hnRNP-associated with lethal yellow (Raly), mRNA HnRNP-associated with lethal yellow	296301	NM_001011958	162714 [**]	chr3:145275752	3q41	4
37	Rattus norvegicus D site albumin promoter binding protein (Dbp), mRNA D site albumin promoter binding protein	24309	NM_012543	11274	chr1:96173655	1	3
38	Rattus norvegicus glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding) (Grina), mRNA Glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	266668	NM_153308	5898	chr7:114279707	7q34	3
39	Rattus norvegicus complement component 1, q subcomponent-like 1 (predicted) (C1ql1_predicted), mRNA Complement component 1, q subcomponent-like 1	363686	NM_001108838	105544	chr10:92116030	10q32.1	3
40	PREDICTED: Rattus norvegicus similar to Retinal rod rhodopsin-sensitive cGMP 3,5-cyclic phosphodiesterase gamma-subunit (GMP-PDE gamma), transcript variant 2 (LOC688297), mRNA	688297	XM_001081805				3
41	Rattus norvegicus acidic ribosomal phosphoprotein P0 (Arbp), mRNA Acidic ribosomal phosphoprotein P0	64205	NM_022402	1079	chr12:42315929	12q16	3
42	Rattus norvegicus ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) (predicted) (Ube2m_predicted), mRNA Ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast)	361509	NM_001108471	15135	chr1:72886097	1q21	3
43	Rattus norvegicus activating transcription factor 4 (Atf4), mRNA Activating transcription factor 4	79255	NM_024403	2423	chr7:118536963	7q34	3
44	Rattus norvegicus similar to RIKEN cDNA 2310036O22 (predicted) (RGD1564093_predicted), mRNA Similar to RIKEN cDNA 2310036O22 Hypothetical protein LOC687248	288920	NM_001105946	121465 22335	chr19:24781571	19q11 14	3
45	Rattus norvegicus calbindin 2 (Calb2), mRNA Calbindin 2	117059	NM_053988	10321	chr19:40028757	19q12	3
46	PREDICTED: Rattus norvegicus similar to Prefoldin subunit 3 (Von Hippel-Lindau-binding protein 1) (VHL-binding protein 1) (VBP-1) (LOC681825), mRNA	681825	XM_001058594				3
47	Rattus norvegicus neural precursor cell expressed, developmentally down-regulated gene 4 (Nedd4), mRNA Neural precursor cell expressed, developmentally down-regulated gene 4	25489	NM_012986	99540	chr8:77331258	8q24	3
48	Rattus norvegicus Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 (Cited2), mRNA Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	114490	NM_053698	31765	chr1:12722580	1p12	3
49	Rattus norvegicus ribosomal protein L6 (Rpl6), mRNA Ribosomal protein L6	117042	NM_053971	2660	chr12:36484406 chr6:129220810	12q16	3
50	Rattus norvegicus heat shock 70kD protein 1B (mapped) (Hspa1b), mRNA Heat shock 70kD protein 1-like (mapped) Heat shock 70kD protein 1B (mapped)	294254	NM_212504	187184 1950	chr20:3955630	20p12	3
51	Rattus norvegicus pyruvate kinase, muscle (Pkm2), mRNA Pyruvate kinase, muscle	25630	NM_053297	1556	chr16:75638083 chr20:17545183 chr8:63501164	8q24	3
52	Rattus norvegicus eukaryotic translation elongation factor 1 alpha 2 (Eef1a2), mRNA Eukaryotic translation elongation factor 1 alpha 2	24799	NM_012660	9764	chr3:170296372	3q43	3
53	Rattus norvegicus heterogeneous nuclear ribonucleoprotein U (Hnrpu), mRNA Complexin 3 Heterogeneous nuclear ribonucleoprotein U	117280	NM_057139	41338 4328	chr13:93986985 chr8:61355865	8q24 13q26	3
54	Rattus norvegicus microtubule-associated protein 1b (Map1b), mRNA Microtubule-associated protein 1B	29456	NM_019217	98152	chr2:30417067	2q12	3
55	Rattus norvegicus carboxypeptidase E (Cpe), mRNA Carboxypeptidase E	25669	NM_013128	7149	chr16:26748589	16p13	3
56	Rattus norvegicus kinesin light chain 2 (predicted) (Klc2_predicted), mRNA Kinesin light chain 2	309159	NM_001107571	13031	chr1:207733977	1q43	3
57	Rattus norvegicus CDP-diacylglycerol synthase 1 (Cds1), mRNA CDP-diacylglycerol synthase 1	81925	NM_031242	18983	chr14:9072985	14p22	3
58	Rattus norvegicus vesicle-associated membrane protein, associated protein a (Vapa), mRNA Vesicle-associated membrane protein, associated protein a	58857	NM_031631	162275	chr9:104350021	9q37	3
59	Rattus norvegicus ubiquinol-cytochrome c reductase core protein 1 (Uqcrc1), mRNA Ubiquinol-cytochrome c reductase core protein 1	301011	NM_001004250	3428	chr8:113955935	8q32	3
60	Rattus norvegicus crystallin, mu (Crym), mRNA Crystallin, mu	117024	NM_053955	24561			3
61	Rattus norvegicus WW domain binding protein 2 (Wbp2), mRNA WW domain binding protein 2	192645	NM_138975	198920	chr10:106187891	10q32.3	3
62	Rattus norvegicus similar to hypothetical protein DKFZp434I2117 (predicted) (RGD1308215_predicted), mRNA Similar to hypothetical protein DKFZp434I2117	293493	NM_001106296	128103	chr1:186002312	1q36	2
63	Xenopus laevis myristoylated alanine rich protein kinase C substrate (marcks), mRNA Similar to Myristoylated alanine-rich C-kinase substrate (MARCKS) (Protein kinase C substrate 80 kDa protein)	379767	NM_001086606	9560	chr20:41306567	20	2
64	Rattus norvegicus protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform (Ppp2ca), mRNA Protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	24672	NM_017039	1271	chr10:37621246 chr11:84271499	10q22	2
65	Rattus norvegicus gamma-glutamyl hydrolase (Ggh), mRNA Gamma-glutamyl hydrolase	25455	NM_012960	10260	chr5:34670887	5q21	2
66	Rattus norvegicus phosphodiesterase 6A, cGMP-specific, rod, alpha (predicted) (Pde6a_predicted), mRNA Phosphodiesterase 6A, cGMP-specific, rod, alpha	307401	NM_001107386	211725	chr18:57231061	18q12.1	2
67	Rattus norvegicus lysosomal-associated protein transmembrane 4B (Laptm4b), mRNA Lysosomal-associated protein transmembrane 4B	315047	NM_001013174	8123	chr7:69684403	7q22	2
68	Rattus norvegicus capping protein (actin filament) muscle Z-line, beta (Capzb), mRNA Capping protein (actin filament) muscle Z-line, beta	298584	NM_001005903	105999	chr5:157980886	5q36	2
69	Rattus norvegicus similar to 60S ribosomal protein L18a (MGC72957), mRNA Ribosomal protein L18A	290641	NM_212510	105821	chr16:19042084	16p14	2
70	Rattus norvegicus phosphatidylethanolamine binding protein 1 (Pebp1), mRNA Phosphatidylethanolamine binding protein 1	29542	NM_017236	29745	chr12:40491429	12q16	2
71	Rattus norvegicus similar to DKFZP547E1010 protein (LOC361990), mRNA Similar to Protein C1orf77 homolog Similar to DKFZP547E1010 protein	361990	NM_001014175	110970 15859	chr2:182777230	4 2q34	2
72	Rattus norvegicus transcription factor Pur-beta (pur-beta), mRNA Purine rich element binding protein B	498407	NM_001017503	156213	chr14:87230346	14q21	2
73	Rattus norvegicus RGD1561181 (predicted) (RGD1561181_predicted), mRNA Ribosomal protein L37a (predicted) Ribosomal protein L37a	500547	NM_001100994	129347 991	chr10:73239419 chr5:146450542	9q33 5q36	2
74	PREDICTED: Rattus norvegicus ring finger protein 187 (predicted) (Rnf187_predicted), mRNA Ring finger protein 187	360533	XM_001076738	100245	chr10:45222717	10q22	2
75	Rattus norvegicus crystallin, beta A2 (Cryba2), mRNA Crystallin, beta A2	286925	NM_173140	204241	chr9:74222880	9q33	2
76	Rattus norvegicus C1q and tumor necrosis factor related protein 4 (predicted) (C1qtnf4_predicted), mRNA C1q and tumor necrosis factor related protein 4	311184	NM_001107745	24378	chr3:75248053	3q24	2
77	Rattus norvegicus COMM domain containing 4 (predicted) (Commd4_predicted), mRNA COMM domain containing 4	363068	NM_001108762	17650	chr8:60917724	8q24	2
78	Rattus norvegicus creatine kinase, brain (Ckb), mRNA Creatine kinase, brain	24264	NM_012529	1472	chr6:136452454	6q32	2
79	Rattus norvegicus ATPase, H+ transporting, V0 subunit D isoform 1 (Atp6v0d1), mRNA ATPase, H+ transporting, lysosomal V0 subunit D1	291969	NM_001011927	94752	chr19:35343302	19q11	2
80	Rattus norvegicus malate dehydrogenase 1, NAD (soluble) (Mdh1), mRNA Malate dehydrogenase 1, NAD (soluble)	24551	NM_033235	13492	chr14:102259370	14q22	2
81	Rattus norvegicus ataxin 10 (Atxn10), mRNA Ataxin 10	170821	NM_133313	6524	chr7:123338716	7q34	2
82	Rattus norvegicus DiGeorge syndrome critical region gene 6 (predicted) (Dgcr6_predicted), mRNA DiGeorge syndrome critical region gene 6	303794	NM_001107080	22467	chr11:84927630	11q23	2
83	Rattus norvegicus ribosomal protein L7a (predicted) (Rpl7a_predicted), mRNA Ribosomal protein L7a Similar to 60S ribosomal protein L7a	296596	NM_001114391	144857 198521	chr18:4281747	3 1q32	2
84	Rattus norvegicus ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit (Atp5d), nuclear gene encoding mitochondrial protein, mRNA ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	245965	NM_139106	3879	chr7:11073084	7q11	2
85	Rattus norvegicus glutathione peroxidase 4 (Gpx4), transcript variant 1, mRNA Glutathione peroxidase 4	29328	NM_017165	3647	chr7:11163786	7q11	2
86	PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (RGD1310440_predicted), mRNA Similar to hypothetical protein	362594	XM_342912	13608	chr5:144426496	5q36	2
87	Rattus norvegicus adaptor-related protein complex 2, mu 1 subunit (Ap2m1), mRNA Adaptor-related protein complex 2, mu 1 subunit	116563	NM_053837	3172	chr11:82588948	11q23	2
88	Rattus norvegicus tubby like protein 1 (predicted) (Tulp1_predicted), mRNA Tubby like protein 1	309900	NM_001107642	254	chr20:6592461	20p12	2
89	Tetrahymena thermophila SB210 hypothetical protein (TTHERM_02141640) partial mRNA	4519687	XM_001028745		chrUn:446952		2
90	Rattus norvegicus protein-O-mannosyltransferase 2 (Pomt2), mRNA Serine palmitoyltransferase, long chain base subunit 2	366697	NM_001037097	162888	chr6:111585493	6q31	2
91	Rattus norvegicus p55 protein (LOC652956), mRNA P55 protein	652956	NM_001037659	189455			2
92	Rattus norvegicus spermidine synthase (Srm), mRNA Spermidine synthase	84596	NM_053464	22258	chr5:165672515	5q36	2
93	Rattus norvegicus ubiquitin-conjugating enzyme E2S (predicted) (Ube2s_predicted), mRNA Ubiquitin-conjugating enzyme E2S	292588	NM_001106224	120398	chr1:67745313	1q12	2
94	Rattus norvegicus H3 histone, family 3B (H3f3b), mRNA H3 histone, family 3B	117056	NM_053985	198918	chr10:106130992	10q32.3	2
95	Rattus norvegicus clathrin, light polypeptide (Lca) (Clta), mRNA Clathrin, light polypeptide (Lca)	83800	NM_031974	112599	chr5:60484449	5q22	2
96	Rattus norvegicus ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, isoform 1 (Atp5a1), nuclear gene encoding mitochondrial protein, mRNA ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle	65262	NM_023093	40255	chr18:74735283	18q12.3	2
97	Rattus norvegicus ribosomal protein S5 (Rps5), mRNA Ribosomal protein S5	25538	NM_001105722	203028	chr1:72829030	1q21	2
98	Rattus norvegicus golgi autoantigen, golgin subfamily a, 7 (Golga7), mRNA Golgi autoantigen, golgin subfamily a, 7	361171	NM_001007731	4105	chr16:73225799	16q12.5	2
99	Rattus norvegicus cold inducible RNA binding protein (Cirbp), mRNA Cold inducible RNA binding protein	81825	NM_031147	28931	chr7:11047368	7q11	2
100	Rattus norvegicus synuclein, beta (Sncb), mRNA Synuclein, beta	113893	NM_080777	20352	chr17:15907504	17p14	2

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