NbLib0010: NIDCD human fetal cochlea subtracted (n)

Last GRIST date: 04/02/2008

A human fetal cochlea cDNA library was constructed using the Clontech PCR-Select cDNA Subtraction Kit. This is a PCR-based method for the enrichment of differentially expressed sequences. Total human fetal cochlea RNA was provided by Cynthia Morton (Brigham and Women's Hospital, Boston, MA).Subtraction was performed with RNA pooled from human brain, testis, kidney, uterus and fibroblast. A plasmid library was generated from these sequences by subcloning into the pCR2.1 TA vector (Invitrogen). The availability of library clones is limited.

Although reads have been trimmed for quality, the full collection includes many short and relatively poor sequences that give rise to some clustering artifacts. The match of individual groups of sequences can be checked using the BLAT option that is accessed by following links from the number of clones (#).

View this library: Full List | Indexed by Chromosomal Position | Indexed by GO Term | Tab Delimited Understanding NEIBank Data
[**] This UniGene associated with another RefSeq or GenBank in this table. Click to display. View All Data | << Previous Page | Next Page >>
Group#Description Entrez Gene IdGenBankUniGene (Build Hs #214) Chromosomal Pos. (BLAT)Chromosome (UniGene)Num. Clones
1
  • Homo sapiens eukaryotic translation elongation factor 1 alpha 1 (EEF1A1), mRNA
  • Eukaryotic translation elongation factor 1 alpha 1
  • Eukaryotic translation elongation factor 1 alpha 1
    		• 1915
    		NM_001402   586423 [**] 
    644639 [**] 
    		   6q14.1
    6q14.1    		 244
    2
  • Homo sapiens collagen, type I, alpha 2 (COL1A2), mRNA
  • Collagen, type I, alpha 2
  • Transcribed locus, strongly similar to NP_036454.1 U6 snRNA-associated Sm-like protein 5 [Homo sapiens]
    		• 1278
    		NM_000089   489142 [**] 
    669724 [**] 
    		   7q22.1
    7    		 177
    3
  • Homo sapiens coagulation factor C homolog, cochlin (Limulus polyphemus) (COCH), mRNA
  • Coagulation factor C homolog, cochlin (Limulus polyphemus)
    		• 1690
    		NM_004086   21016 [**] 
    		   14q12-q13 147
    4
  • Homo sapiens collagen, type IX, alpha 1 (COL9A1), transcript variant 1, mRNA
  • Collagen, type IX, alpha 1
    		• 1297
    		NM_001851   590892 [**] 
    		   6q12-q14 80
    5
  • Homo sapiens collagen, type I, alpha 1 (COL1A1), mRNA
  • Collagen, type I, alpha 1
    		• 1277
    		NM_000088   172928 [**] 
    		   17q21.33 74
    6
  • Homo sapiens potassium channel tetramerisation domain containing 12 (KCTD12), mRNA
  • Potassium channel tetramerisation domain containing 12
    		• 115207
    		NM_138444   693617 [**] 
    		   13q22.3 68
    7
  • Homo sapiens collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital) (COL2A1), transcript variant 1, mRNA
  • Collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital)
    		• 1280
    		NM_001844   408182 [**] 
    		   12q13.11-q13.2 68
    8
  • Homo sapiens osteoglycin (osteoinductive factor, mimecan) (OGN), transcript variant 2, mRNA
  • Osteoglycin
    		• 4969
    		NM_024416   708130 [**] 
    		     56
    9
  • Homo sapiens actin, gamma 1 (ACTG1), mRNA
  • Actin, gamma 1
    		• 71
    		NM_001614   514581 [**] 
    		   17q25 48
    10
  • Homo sapiens chromosome 5 open reading frame 13 (C5orf13), mRNA
  • Chromosome 5 open reading frame 13
    		• 9315
    		NM_004772   36053 [**] 
    		   5q22.1 45
    11
  • PREDICTED: Homo sapiens similar to OK/SW-CL.16 (LOC440552), mRNA
    		•   XM_496332         36
    12
  • Homo sapiens collagen, type IX, alpha 2 (COL9A2), mRNA
  • Collagen, type IX, alpha 2
    		• 1298
    		NM_001852   418012 [**] 
    		   1p33-p32 33
    13
  • Homo sapiens integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II) (IBSP), mRNA
  • Integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)
    		• 3381
    		NM_004967   518726 [**] 
    		   4q21-q25 33
    14
  • Transcribed locus
  • Collagen, type IX, alpha 1
    		•     590892 [**] 
    		   6q12-q14 32
    15
  • Homo sapiens ribosomal protein S4, X-linked (RPS4X), mRNA
  • Ribosomal protein S4, X-linked
    		• 6191
    		NM_001007   446628 [**] 
    		   Xq13.1 31
    16
  • Integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)
    		•     518726 [**] 
    		   4q21-q25 30
    17
  • Homo sapiens secreted protein, acidic, cysteine-rich (osteonectin) (SPARC), mRNA
  • Secreted protein, acidic, cysteine-rich (osteonectin)
    		• 6678
    		NM_003118   111779 [**] 
    		   5q31.3-q32 26
    18
  • Homo sapiens collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) (COL3A1), mRNA
  • Collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant)
    		• 1281
    		NM_000090   443625 [**] 
    		   2q31 26
    19
  • Homo sapiens ribosomal protein L7a (RPL7A), mRNA
  • Ribosomal protein L7a
    		• 6130
    		NM_000972   499839 [**] 
    		   9q34 24
    20
  • 90% protein similarity to: cytochrome b [Homo sapiens] (Similar to EST: AU310744)
    		•   AU310744         24
    21
  • Homo sapiens collagen, type IX, alpha 3 (COL9A3), mRNA
  • Collagen, type IX, alpha 3
    		• 1299
    		NM_001853   126248 [**] 
    		   20q13.3 21
    22
  • Homo sapiens carbonic anhydrase III, muscle specific (CA3), mRNA
  • Carbonic anhydrase III, muscle specific
    		• 761
    		NM_005181   82129 [**] 
    		   8q13-q22 21
    23
  • Homo sapiens pleiotrophin (heparin binding growth factor 8, neurite growth-promoting factor 1) (PTN), mRNA
  • Pleiotrophin (heparin binding growth factor 8, neurite growth-promoting factor 1)
    		• 5764
    		NM_002825   371249  
    		   7q33-q34 20
    24
  • Homo sapiens ribosomal protein L35a (RPL35A), mRNA
  • Ribosomal protein L35a
    		• 6165
    		NM_000996   529631 [**] 
    		   3q29-qter 18
    25
  • Homo sapiens ribosomal protein L19 (RPL19), mRNA
  • Ribosomal protein L19
    		• 6143
    		NM_000981   381061  
    		   17q11.2-q12 17
    26
  • Homo sapiens inhibitor of DNA binding 3, dominant negative helix-loop-helix protein (ID3), mRNA
  • Inhibitor of DNA binding 3, dominant negative helix-loop-helix protein
    		• 3399
    		NM_002167   76884  
    		   1p36.13-p36.12 17
    27
  • Homo sapiens glycoprotein hormones, alpha polypeptide (CGA), mRNA
  • Glycoprotein hormones, alpha polypeptide
    		• 1081
    		NM_000735   119689  
    		   6q12-q21 16
    28
  • Homo sapiens heterogeneous nuclear ribonucleoprotein A1 (HNRPA1), transcript variant 1, mRNA
  • Heterogeneous nuclear ribonucleoprotein A1
    		• 3178
    		NM_002136   699190 [**] 
    		   12q13.1 15
    29
  • Homo sapiens collagen, type XI, alpha 1 (COL11A1), transcript variant A, mRNA
  • Collagen, type XI, alpha 1
    		• 1301
    		NM_001854   523446 [**] 
    		   1p21 15
    30
  • Homo sapiens ribosomal protein S6 (RPS6), mRNA
  • Ribosomal protein S6
    		• 6194
    		NM_001010   408073 [**] 
    		   9p21 14
    31
  • Homo sapiens nascent-polypeptide-associated complex alpha polypeptide (NACA), mRNA
  • Nascent polypeptide-associated complex alpha subunit
    		• 4666
    		NM_005594   505735  
    		   12q23-q24.1 14
    32
  • Homo sapiens ribosomal protein L7 (RPL7), mRNA
  • Ribosomal protein L7
    		• 6129
    		NM_000971   571841  
    		   8q21.11 14
    33
  • Coagulation factor C homolog, cochlin (Limulus polyphemus)
    		•     21016 [**] 
    		   14q12-q13 14
    34
  • Homo sapiens ribosomal protein S25 (RPS25), mRNA
  • Ribosomal protein S25
    		• 6230
    		NM_001028   512676 [**] 
    		   11q23.3 13
    35
  • Homo sapiens ribosomal protein L27 (RPL27), mRNA
  • Ribosomal protein L27
    		• 6155
    		NM_000988   514196  
    		   17q21.1-q21.2 13
    36
  • 87% protein similarity to: EF-1-alpha
  • Eukaryotic translation elongation factor 1 alpha 1
  • Eukaryotic translation elongation factor 1 alpha 1
    		•     586423 [**] 
    644639 [**] 
    		   6q14.1
    6q14.1    		 13
    37
  • Homo sapiens laminin, beta 1 (LAMB1), mRNA
  • Laminin, beta 1
    		• 3912
    		NM_002291   650585 [**] 
    		   7q22 12
    38
  • Homo sapiens fibronectin 1 (FN1), transcript variant 3, mRNA
  • Fibronectin 1
    		• 2335
    		NM_002026   203717  
    		   2q34 12
    39
  • Homo sapiens ribosomal protein S15a (RPS15A), mRNA
  • Ribosomal protein S15a
    		• 6210
    		NM_001019   370504  
    		   16p 12
    40
  • Homo sapiens cysteine-rich secretory protein LCCL domain containing 1 (CRISPLD1), mRNA
  • Cysteine-rich secretory protein LCCL domain containing 1
    		• 83690
    		NM_031461   436542  
    		   8q21.11 12
    41
  • Homo sapiens peripheral myelin protein 22 (PMP22), transcript variant 2, mRNA
  • Peripheral myelin protein 22
    		• 5376
    		NM_153321   372031 [**] 
    		   17p12-p11.2 12
    42
  • Homo sapiens myelin basic protein (MBP), transcript variant 1, mRNA
  • Myelin basic protein
    		• 4155
    		NM_001025081   551713 [**] 
    		   18q23 12
    43
  • Homo sapiens thioredoxin interacting protein (TXNIP), mRNA
  • Thioredoxin interacting protein
    		• 10628
    		NM_006472   533977 [**] 
    		   1q21.1 12
    44
  • Spectrin, beta, non-erythrocytic 1
    		•     503178  
    705692  
    		   2p21
    2p21    		 12
    45
  • Homo sapiens hemoglobin, gamma G (HBG2), mRNA
  • Hemoglobin, gamma G
  • Hemoglobin, gamma A
    		• 3048
    		NM_000184   302145 [**] 
    705371 [**] 
    		   11p15.5
    11p15.5    		 11
    46
  • Homo sapiens tubulin, alpha, ubiquitous (K-ALPHA-1), mRNA
  • Tubulin, alpha 1b
  • Tubulin, alpha 1b
    		• 10376
    		NM_006082   524390  
    705373  
    		   12q13.12
    12q13.12    		 11
    47
  • Homo sapiens ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) (RAC1), transcript variant Rac1, mRNA
  • Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)
    		• 5879
    		NM_006908   413812 [**] 
    		   7p22 11
    48
  • Homo sapiens glyceraldehyde-3-phosphate dehydrogenase (GAPDH), mRNA
  • Transcribed locus, strongly similar to NP_002037.2 glyceraldehyde-3-phosphate dehydrogenase [Homo sapiens]
    		• 2597
    		NM_002046   479728  
    		   12p13 11
    49
  • Collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital)
    		•     408182 [**] 
    		   12q13.11-q13.2 11
    50
  • Homo sapiens insulin-like growth factor binding protein 5 (IGFBP5), mRNA
  • Insulin-like growth factor binding protein 5
    		• 3488
    		NM_000599   635441  
    		   2q33-q36 10
    51
  • Homo sapiens nidogen 2 (osteonidogen) (NID2), mRNA
  • Nidogen 2 (osteonidogen)
    		• 22795
    		NM_007361   369840 [**] 
    		   14q21-q22 10
    52
  • Homo sapiens ATPase, Na+/K+ transporting, alpha 2 (+) polypeptide (ATP1A2), mRNA
  • ATPase, Na+/K+ transporting, alpha 2 (+) polypeptide
    		• 477
    		NM_000702   34114  
    		   1q21-q23 10
    53
  • Homo sapiens ribosomal protein S13 (RPS13), mRNA
  • PREDICTED: Homo sapiens similar to ribosomal protein S13 (LOC729236), mRNA
    		• 6207
    		NM_001017   632891 [**] 
    		   1p32.3 10
    54
  • Unidentified n115
  • Eukaryotic translation elongation factor 1 alpha 1
  • Eukaryotic translation elongation factor 1 alpha 1
    		•     586423 [**] 
    644639 [**] 
    		   6q14.1
    6q14.1    		 10
    55
  • Collagen, type I, alpha 2
  • Transcribed locus, strongly similar to NP_036454.1 U6 snRNA-associated Sm-like protein 5 [Homo sapiens]
    		•     489142 [**] 
    669724 [**] 
    		   7q22.1
    7    		 10
    56
  • Homo sapiens growth hormone 1 (GH1), transcript variant 1, mRNA
  • Growth hormone 1
    		• 2688
    		NM_000515   655229 [**] 
    		   17q24.2 9
    57
  • Homo sapiens ribosomal protein L21 (RPL21), mRNA
  • Ribosomal protein L21
    		• 6144
    		NM_000982   381123  
    		   13q12.2 9
    58
  • Homo sapiens ribosomal protein L13a (RPL13A), mRNA
  • Ribosomal protein L13a
    		• 23521
    		NM_012423   523185  
    		   19q13.3 9
    59
  • Homo sapiens ribosomal protein S2 (RPS2), mRNA
  • Small nucleolar RNA, H/ACA box 64
  • Ribosomal protein S2
    		• 6187
    		NM_002952   498569  
    506997  
    		   16p13.3
    16p13.3    		 9
    60
  • Homo sapiens alpha-2-macroglobulin (A2M), mRNA
  • Alpha-2-macroglobulin
    		• 2
    		NM_000014   212838 [**] 
    		   12p13.3-p12.3 9
    61
  • Homo sapiens spermidine/spermine N1-acetyltransferase (SAT), mRNA
  • Spermidine/spermine N1-acetyltransferase 1
    		• 6303
    		NM_002970   28491 [**] 
    		   Xp22.1 9
    62
  • Homo sapiens ribosomal protein S26 (RPS26), mRNA
  • Hypothetical protein LOC728937
  • Hypothetical protein LOC728937
    		• 6231
    		NM_001029   567235 [**] 
    632726 [**] 
    		   12q13
    12q13    		 9
    63
  • Homo sapiens nephroblastoma overexpressed gene (NOV), mRNA
  • Nephroblastoma overexpressed gene
    		• 4856
    		NM_002514   235935 [**] 
    		   8q24.1 9
    64
  • Homo sapiens otoraplin (OTOR), mRNA
  • Otoraplin
    		• 56914
    		NM_020157   41119 [**] 
    		   20p12.1-p11.23 9
    65
  • Homo sapiens ribosomal protein L31 (RPL31), mRNA
  • Ribosomal protein L31
    		• 6160
    		NM_000993   469473  
    		   2q11.2 9
    66
  • Secreted protein, acidic, cysteine-rich (osteonectin)
    		•     111779 [**] 
    		   5q31.3-q32 9
    67
  • Homo sapiens ribosomal protein L15 (RPL15), mRNA
  • Ribosomal protein L15
  • Transcribed locus
  • Transcribed locus, strongly similar to NP_620814.1 ribosomal protein L15 [Rattus norvegicus]
    		• 6138
    		NM_002948   381219  
    695621  
    706312  
    		   3p24.2
    3p24.2
    3    		 8
    68
  • Homo sapiens eukaryotic translation elongation factor 2 (EEF2), mRNA
  • Eukaryotic translation elongation factor 2
  • Transcribed locus
    		• 1938
    		NM_001961   515070  
    651395  
    		   19pter-q12
    19    		 8
    69
  • Homo sapiens ribosomal protein S7 (RPS7), mRNA
  • Ribosomal protein S7
  • Ribosomal protein S7
    		• 6201
    		NM_001011   534346  
    546287  
    		   2p25
    2p25    		 8
    70
  • Homo sapiens ribosomal protein L6 (RPL6), transcript variant 2, mRNA
  • Ribosomal protein L6
    		• 6128
    		NM_000970   546283  
    		   12q24.1 8
    71
  • Homo sapiens BMP and activin membrane-bound inhibitor homolog (Xenopus laevis) (BAMBI), mRNA
  • BMP and activin membrane-bound inhibitor homolog (Xenopus laevis)
    		• 25805
    		NM_012342   533336 [**] 
    		   10p12.3-p11.2 8
    72
  • Homo sapiens lactate dehydrogenase B (LDHB), mRNA
  • Lactate dehydrogenase B
    		• 3945
    		NM_002300   446149 [**] 
    		   12p12.2-p12.1 8
    73
  • Homo sapiens ferritin, heavy polypeptide 1 (FTH1), mRNA
  • Ferritin, heavy polypeptide 1
    		• 2495
    		NM_002032   524910  
    		   11q13 8
    74
  • Homo sapiens heterogeneous nuclear ribonucleoprotein A2/B1 (HNRPA2B1), transcript variant A2, mRNA
  • Heterogeneous nuclear ribonucleoprotein A2/B1
    		• 3181
    		NM_002137   487774  
    		   7p15 8
    75
  • Homo sapiens ribosomal protein S18 (RPS18), mRNA
  • Ribosomal protein S18
    		• 6222
    		NM_022551   627414  
    		   6p21.3 7
    76
  • Homo sapiens ribosomal protein L9 (RPL9), transcript variant 1, mRNA
  • Ribosomal protein L9
  • Ribosomal protein L9
  • Ribosomal protein L9
    		• 6133
    		NM_000661   412370  
    513083  
    707474  
    		   4p13
    4p13
    4p13    		 7
    77
  • Homo sapiens ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) isoform 3 (ATP5G3), nuclear gene encoding mitochondrial protein, transcript variant 1, mRNA
  • ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)
    		•   NM_001002256   429  
    		   2q31.1 7
    78
  • Homo sapiens ribosomal protein, large, P2 (RPLP2), mRNA
  • Ribosomal protein, large, P2
    		• 6181
    		NM_001004   437594 [**] 
    		   11p15.5-p15.4 7
    79
  • Homo sapiens translocase of outer mitochondrial membrane 7 homolog (yeast) (TOMM7), mRNA
  • Translocase of outer mitochondrial membrane 7 homolog (yeast)
    		• 54543
    		NM_019059   112318  
    		   7p15.3 7
    80
  • Homo sapiens putative translation initiation factor (SUI1), mRNA
  • Eukaryotic translation initiation factor 1
    		• 10209
    		NM_005801   150580  
    		   17q21.2 7
    81
  • Homo sapiens collagen, type XI, alpha 2 (COL11A2), transcript variant 3, mRNA
  • Collagen, type XI, alpha 2
    		• 1302
    		NM_080679   390171 [**] 
    		   6p21.3 7
    82
  • Homo sapiens ribosomal protein L30 (RPL30), mRNA
  • Ribosomal protein L30
    		• 6156
    		NM_000989   400295  
    		   8q22 7
    83
  • Homo sapiens tumor protein, translationally-controlled 1 (TPT1), mRNA
  • Tumor protein, translationally-controlled 1
    		• 7178
    		NM_003295   374596 [**] 
    		   13q12-q14 7
    84
  • Chromosome 5 open reading frame 13
    		•     36053 [**] 
    		   5q22.1 7
    85
  • Actin, gamma 1
  • Transcribed locus, strongly similar to XP_777977.1 hypothetical protein CNBA4460 [Cryptococcus neoformans var. neoformans B-3501A]
    		•     514581 [**] 
    696950  
    		   17q25
    17    		 7
    86
  • Homo sapiens collectin sub-family member 12 (COLEC12), transcript variant II, mRNA
  • Collectin sub-family member 12
    		• 81035
    		NM_030781   464422  
    		   18pter-p11.3 6
    87
  • Homo sapiens carboxypeptidase E (CPE), mRNA
  • Carboxypeptidase E
  • Transcribed locus
    		• 1363
    		NM_001873   707992 [**] 
    75360  
    		   4 6
    88
  • Homo sapiens growth differentiation factor 10 (GDF10), mRNA
  • Growth differentiation factor 10
    		• 2662
    		NM_004962   2171  
    		   10q11.22 6
    89
  • Homo sapiens tissue inhibitor of metalloproteinase 3 (Sorsby fundus dystrophy, pseudoinflammatory) (TIMP3), mRNA
  • Transcribed locus
  • TIMP metallopeptidase inhibitor 3 (Sorsby fundus dystrophy, pseudoinflammatory)
    		• 7078
    		NM_000362   682316  
    701968 [**] 
    		   22
    22    		 6
    90
  • Homo sapiens esophageal cancer related gene 4 protein (ECRG4), mRNA
  • Chromosome 2 open reading frame 40
    		• 84417
    		NM_032411   43125 [**] 
    		   2q12.2 6
    91
  • Homo sapiens ras homolog gene family, member A (RHOA), mRNA
  • Ras homolog gene family, member A
  • Transcribed locus, strongly similar to NP_058082.2 ras homolog gene family, member A [Mus musculus]
    		• 387
    		NM_001664   247077  
    657976  
    		   3p21.3
    3p21.3    		 6
    92
  • Homo sapiens ribosomal protein L32 (RPL32), transcript variant 1, mRNA
  • Ribosomal protein L32
    		• 6161
    		NM_000994   265174 [**] 
    		   3p25-p24 6
    93
  • Homo sapiens integral membrane protein 2B (ITM2B), mRNA
  • Transcribed locus, strongly similar to NP_032436.1 integral membrane protein 2B [Mus musculus]
  • Integral membrane protein 2B
    		• 9445
    		NM_021999   643683  
    706778  
    		   13q14.3
    13q14.3    		 6
    94
  • Homo sapiens ribosomal protein L37a (RPL37A), mRNA
  • Ribosomal protein L37a
    		• 6168
    		NM_000998   433701  
    		   2q35 6
    95
  • Homo sapiens cadherin 11, type 2, OB-cadherin (osteoblast) (CDH11), mRNA
  • Cadherin 11, type 2, OB-cadherin (osteoblast)
    		• 1009
    		NM_001797   116471  
    		   16q22.1 6
    96
  • Transcribed locus, strongly similar to NP_598545.2 WW domain containing transcription regulator 1 [Mus musculus]
  • WW domain containing transcription regulator 1
    		•     699296  
    		   3q23-q24 6
    97
  • Nidogen 1
    		•     356624  
    		   1q43 6
    98
  • 92% protein similarity to: ATPase subunit 6 [Homo sapiens]
    		•           6
    99
  • 95% protein similarity to: urf4 [Homo sapiens] (Similar to EST: AV648169)
    		•   AV648169         6
    100
  • Homo sapiens ribosomal protein L4 (RPL4), mRNA
  • Ribosomal protein L4
    		• 6124
    		NM_000968   186350  
    		   15q22 5


    << Previous Page | Next Page >>
    1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15