| | Research Articles Chasing Migration Genes: A Brain Expressed Sequence Tag Resource for Summer and Migratory Monarch Butterflies (Danaus plexippus) Haisun Zhu, Amy Casselman, and Steven M. Reppert PMCID: PMC2156104 Age-Specific Differences in Oncogenic Pathway Deregulation Seen in Human Breast Tumors Carey K. Anders, Chaitanya R. Acharya, David S. Hsu, Gloria Broadwater, Katherine Garman, John A. Foekens, Yi Zhang, Yixin Wang, Kelly Marcom, Jeffrey R. Marks, Sayan Mukherjee, Joseph R. Nevins, Kimberly L. Blackwell, and Anil Potti PMCID: PMC2148101 Extent of Beta Cell Destruction Is Important but Insufficient to Predict the Onset of Type 1 Diabetes Mellitus David J. Klinke, II PMCID: PMC2147725 Structural Requirements for Yersinia YopJ Inhibition of MAP Kinase Pathways Yi-Heng Hao, Yong Wang, Dara Burdette, Sohini Mukherjee, Gladys Keitany, Elizabeth Goldsmith, and Kim Orth PMCID: PMC2147050 Nitrated α–Synuclein Immunity Accelerates Degeneration of Nigral Dopaminergic Neurons Eric J. Benner, Rebecca Banerjee, Ashley D. Reynolds, Simon Sherman, Vladimir M. Pisarev, Vladislav Tsiperson, Craig Nemachek, Pawel Ciborowski, Serge Przedborski, R. Lee Mosley, and Howard E. Gendelman PMCID: PMC2147051 Spike Timing Dependent Plasticity Finds the Start of Repeating Patterns in Continuous Spike Trains Timothée Masquelier, Rudy Guyonneau, and Simon J. Thorpe PMCID: PMC2147052 Comparative Genomic Analyses of Copper Transporters and Cuproproteomes Reveal Evolutionary Dynamics of Copper Utilization and Its Link to Oxygen Perry G. Ridge, Yan Zhang, and Vadim N. Gladyshev PMCID: PMC2147054 Incidence of Tuberculosis and the Predictive Value of ELISPOT and Mantoux Tests in Gambian Case Contacts Philip C. Hill, Dolly J. Jackson-Sillah, Annette Fox, Roger H. Brookes, Bouke C. de Jong, Moses D. Lugos, Ifedayo M. Adetifa, Simon A. Donkor, Alex M. Aiken, Stephen R. Howie, Tumani Corrah, Keith P. McAdam, and Richard A. Adegbola PMCID: PMC2147055 Direct Interaction of Endogenous Kv Channels with Syntaxin Enhances Exocytosis by Neuroendocrine Cells Dafna Singer-Lahat, Dodo Chikvashvili, and Ilana Lotan PMCID: PMC2148073 Correction of Population Stratification in Large Multi-Ethnic
Association Studies David Serre, Alexandre Montpetit, Guillaume Paré, James C. Engert, Salim Yusuf, Bernard Keavney, Thomas J. Hudson, and Sonia Anand PMCID: PMC2198793 Genetic Evidence for a Mitochondriate Ancestry in the ‘Amitochondriate’ Flagellate Trimastix pyriformis Vladimir Hampl, Jeffrey D. Silberman, Alexandra Stechmann, Sara Diaz-Triviño, Patricia J. Johnson, and Andrew J. Roger PMCID: PMC2148110 Albumin-Associated Lipids Regulate Human Embryonic Stem Cell Self-Renewal Francesc R. Garcia-Gonzalo and Juan Carlos Izpisúa Belmonte PMCID: PMC2148252 Sex-Related Differences in Gene Expression in Human Skeletal Muscle Stephen Welle, Rabi Tawil, and Charles A. Thornton PMCID: PMC2148100 Whole-Gene Positive Selection, Elevated Synonymous Substitution Rates, Duplication, and Indel Evolution of the Chloroplast clpP1 Gene Per Erixon and Bengt Oxelman PMCID: PMC2148103 The OSU1/QUA2/TSD2-Encoded Putative Methyltransferase Is a Critical Modulator of Carbon and Nitrogen Nutrient Balance Response in Arabidopsis Peng Gao, Zeyu Xin, and Zhi-Liang Zheng PMCID: PMC2148111 CD209 Genetic Polymorphism and Tuberculosis Disease Fredrik O. Vannberg, Stephen J. Chapman, Chiea C. Khor, Kerrie Tosh, Sian Floyd, Dolly Jackson-Sillah, Amelia Crampin, Lifted Sichali, Boubacar Bah, Per Gustafson, Peter Aaby, Keith P. W. J. McAdam, Oumou Bah-Sow, Christian Lienhardt, Giorgio Sirugo, Paul Fine, and Adrian V. S. Hill PMCID: PMC2148105 Kinetic Pathway of Pyrophosphorolysis by a Retrotransposon Reverse Transcriptase Manjula Pandey, Smita S. Patel, and Abram Gabriel PMCID: PMC2148107 High-Resolution Molecular Epidemiology and Evolutionary History of HIV-1 Subtypes in Albania Marco Salemi, Tulio de Oliveira, Massimo Ciccozzi, Giovanni Rezza, and Maureen M. Goodenow PMCID: PMC2148102 Recurring Ethanol Exposure Induces Disinhibited Courtship in Drosophila Hyun-Gwan Lee, Young-Cho Kim, Jennifer S. Dunning, and Kyung-An Han PMCID: PMC2148075 The Association of Depressive Symptoms with Inflammatory Factors and Adipokines in Middle-Aged and Older Chinese An Pan, Xingwang Ye, Oscar H. Franco, Huaixing Li, Zhijie Yu, Jing Wang, Qibin Qi, Wenjia Gu, Xinghuo Pang, Hong Liu, and Xu Lin PMCID: PMC2148106 Microbial Patterns Signaling via Toll-Like Receptors 2 and 5 Contribute to Epithelial Repair, Growth and Survival Renat Shaykhiev, Jürgen Behr, and Robert Bals PMCID: PMC2148109 Using fMRI Brain Activation to Identify Cognitive States Associated with Perception of Tools and Dwellings Svetlana V. Shinkareva, Robert A. Mason, Vicente L. Malave, Wei Wang, Tom M. Mitchell, and Marcel Adam Just PMCID: PMC2148074 C-Reactive Protein (CRP) Gene Polymorphisms, CRP Levels, and Risk of Incident Coronary Heart Disease in Two Nested Case-Control Studies Jennifer K. Pai, Kenneth J. Mukamal, Kathryn M. Rexrode, and Eric B. Rimm PMCID: PMC2148071 MiR-10 Represses HoxB1a and HoxB3a in Zebrafish Joost M. Woltering and Antony J. Durston PMCID: PMC2148072 UCP-2 and UCP-3 Proteins Are Differentially Regulated in Pancreatic Beta-Cells Yunfeng Li, Kathrin Maedler, Luan Shu, and Leena Haataja PMCID: PMC2164968 Molecular Characterization of Spontaneous Mesenchymal Stem Cell Transformation Daniel Rubio, Silvia Garcia, Maria F. Paz, Teresa De la Cueva, Luis A. Lopez-Fernandez, Alison C. Lloyd, Javier Garcia-Castro, and Antonio Bernad PMCID: PMC2151133 Synchrony of Clinical and Laboratory Surveillance for Influenza in Hong Kong Lin Yang, Chit Ming Wong, Eric H. Y. Lau, King Pan Chan, Chun Quan Ou, and Joseph S. M. Peiris PMCID: PMC2151138 Variability and Action Mechanism of a Family of Anticomplement Proteins in Ixodes ricinus Bernard Couvreur, Jérôme Beaufays, Cédric Charon, Kathia Lahaye, François Gensale, Valérie Denis, Benoît Charloteaux, Yves Decrem, Pierre-Paul Prévôt, Michel Brossard, Luc Vanhamme, and Edmond Godfroid PMCID: PMC2151134 Cross-Protection against Lethal H5N1 Challenge in Ferrets with an Adjuvanted Pandemic Influenza Vaccine Benoît Baras, Koert J. Stittelaar, James H. Simon, Robert J. M. M. Thoolen, Sally P. Mossman, Frank H. M. Pistoor, Geert van Amerongen, Martine A. Wettendorff, Emmanuel Hanon, and Albert D. M. E. Osterhaus PMCID: PMC2151135 Polyploidization as a Retraction Force in Plant Genome Evolution: Sequence Rearrangements in Triticale Miguel Bento, H. Sofia Pereira, Margarida Rocheta, Perry Gustafson, Wanda Viegas, and Manuela Silva PMCID: PMC2151762 Probing Host Pathogen Cross-Talk by Transcriptional Profiling of Both Mycobacterium tuberculosis and Infected Human Dendritic Cells and Macrophages Ludovic Tailleux, Simon J. Waddell, Mattia Pelizzola, Alessandra Mortellaro, Michael Withers, Antoine Tanne, Paola Ricciardi Castagnoli, Brigitte Gicquel, Neil G. Stoker, Philip D. Butcher, Maria Foti, and Olivier Neyrolles PMCID: PMC2151136 Genome-Wide Expression Analysis of a Spinal Muscular Atrophy Model: Towards Discovery of New Drug Targets Sheena Lee, Arzu Sayin, Stuart Grice, Howard Burdett, Dilair Baban, and Marcel van den Heuvel PMCID: PMC2151137 Polymorphisms of the TUB Gene Are Associated with Body Composition and Eating Behavior in Middle-Aged Women Jana V. van Vliet-Ostaptchouk, N. Charlotte Onland-Moret, Ronit Shiri-Sverdlov, Patrick J. J. van Gorp, Anne Custers, Petra H. M. Peeters, Cisca Wijmenga, Marten H. Hofker, and Yvonne T. van der Schouw PMCID: PMC2157487 Life Depends upon Two Kinds of Water Philippa Wiggins PMCID: PMC2170473 Neurabin Contributes to Hippocampal Long-Term Potentiation and Contextual Fear Memory Long-Jun Wu, Ming Ren, Hansen Wang, Susan S. Kim, Xiaoyan Cao, and Min Zhuo PMCID: PMC2169299 Global Data for Ecology and Epidemiology: A Novel Algorithm for Temporal Fourier Processing MODIS Data Jörn P. W. Scharlemann, David Benz, Simon I. Hay, Bethan V. Purse, Andrew J. Tatem, G. R. William Wint, and David J. Rogers PMCID: PMC2171368 A Potential New Pathway for Staphylococcus aureus Dissemination: The Silent Survival of S. aureus Phagocytosed by Human Monocyte-Derived Macrophages Malgorzata Kubica, Krzysztof Guzik, Joanna Koziel, Miroslaw Zarebski, Walter Richter, Barbara Gajkowska, Anna Golda, Agnieszka Maciag-Gudowska, Klaudia Brix, Les Shaw, Timothy Foster, and Jan Potempa PMCID: PMC2169301 Self-Assembling Peptide Nanofiber Scaffolds Accelerate Wound Healing Aurore Schneider, Jonathan A. Garlick, and Christophe Egles PMCID: PMC2157486 Regional Differences in Prevalence of HIV-1 Discordance in Africa and Enrollment of HIV-1 Discordant Couples into an HIV-1 Prevention Trial Jairam R. Lingappa, Barrot Lambdin, Elizabeth Ann Bukusi, Kenneth Ngure, Linda Kavuma, Mubiana Inambao, William Kanweka, Susan Allen, James N. Kiarie, Joseph Makhema, Edwin Were, Rachel Manongi, David Coetzee, Guy de Bruyn, Sinead Delany-Moretlwe, Amalia Magaret, Nelly Mugo, Andrew Mujugira, Patrick Ndase, Connie Celum, and for the Partners in Prevention HSV-2/HIV Transmission Study Group PMCID: PMC2156103 Self Assessment in Insects: Honeybee Queens Know Their Own Strength Vincent Dietemann, Huo-Qing Zheng, Colleen Hepburn, H. Randall Hepburn, Shui-Hua Jin, Robin M. Crewe, Sarah E. Radloff, Fu-Liang Hu, and Christian W. W. Pirk PMCID: PMC2173938 Human IgG/FcγR Interactions Are Modulated by Streptococcal IgG Glycan Hydrolysis Maria Allhorn, Anders I. Olin, Falk Nimmerjahn, and Mattias Collin PMCID: PMC2173940 The Drosophila Cytosine-5 Methyltransferase Dnmt2 Is Associated with the Nuclear Matrix and Can Access DNA during Mitosis Matthias Schaefer, Julia P. Steringer, and Frank Lyko PMCID: PMC2169302 A Meta-Analysis of Effects of Bt Crops on Honey Bees (Hymenoptera: Apidae) Jian J. Duan, Michelle Marvier, Joseph Huesing, Galen Dively, and Zachary Y. Huang PMCID: PMC2169303 Pharmacological Analysis of Ionotropic Glutamate Receptor Function in Neuronal Circuits of the Zebrafish Olfactory Bulb Rico Tabor and Rainer W. Friedrich PMCID: PMC2169298 Inhibition of Influenza M2-Induced Cell Death Alleviates Its Negative Contribution to Vaccination Efficiency Petr O. Ilyinskii, Alexandra S. Gambaryan, Anatoli B. Meriin, Vladimir Gabai, Alex Kartashov, Galini Thoidis, and Alexander M. Shneider PMCID: PMC2175529 Signal-Regulated Pre-mRNA Occupancy by the General Splicing Factor U2AF Anne Tisserant and Harald König PMCID: PMC2169300 Prominent and Persistent Extraneural Infection in Human PrP Transgenic Mice Infected with Variant CJD Vincent Béringue, Annick Le Dur, Philippe Tixador, Fabienne Reine, Laurence Lepourry, Armand Perret-Liaudet, Stéphane Haïk, Jean-Luc Vilotte, Michel Fontés, and Hubert Laude PMCID: PMC2171367 Protocol for Nearly Full-Length Sequencing of HIV-1 RNA from Plasma Yuka Nadai, Lindsay M. Eyzaguirre, Niel T. Constantine, Anne M. Sill, Farley Cleghorn, William A. Blattner, and Jean K. Carr PMCID: PMC2170516 Inhibition of Anthrax Lethal Toxin-Induced Cytolysis of RAW264.7 Cells by Celastrol Sarah Chapelsky, Sarah Batty, Mia Frost, and Jeremy Mogridge PMCID: PMC2170518 Gene Expression Profile of Neuronal Progenitor Cells Derived from hESCs: Activation of Chromosome 11p15.5 and Comparison to Human Dopaminergic Neurons William J. Freed, Jia Chen, Cristina M. Bäckman, Catherine M. Schwartz, Tandis Vazin, Jingli Cai, Charles E. Spivak, Carl R. Lupica, Mahendra S. Rao, and Xianmin Zeng PMCID: PMC2170519 Elevated Risk for HIV-1 Infection in Adolescents and Young Adults in São Paulo, Brazil Katia Cristina Bassichetto, Denise Pimentel Bergamaschi, Solange Maria Oliveira, Marylei Casteldelli Verri Deienno, Reginaldo Bortolato, Heloíza Vilma de Rezende, Thaís Arthur, Helena Tomiyama, Colyn Watkins, Fabio Mesquita, Maria Cristina Abbate, and Esper Georges Kallas PMCID: PMC2173939 Broad and Gag-Biased HIV-1 Epitope Repertoires Are Associated with Lower Viral Loads Morgane Rolland, David Heckerman, Wenjie Deng, Christine M. Rousseau, Hoosen Coovadia, Karen Bishop, Philip J. R. Goulder, Bruce D. Walker, Christian Brander, and James I. Mullins PMCID: PMC2170517 Paracellular Absorption: A Bat Breaks the Mammal Paradigm Enrique Caviedes-Vidal, William H. Karasov, Juan Gabriel Chediack, Verónica Fasulo, Ariovaldo P. Cruz-Neto, and Lye Otani PMCID: PMC2173942 A Model for Carbohydrate Metabolism in the Diatom Phaeodactylum tricornutum Deduced from Comparative Whole Genome Analysis Peter G. Kroth, Anthony Chiovitti, Ansgar Gruber, Veronique Martin-Jezequel, Thomas Mock, Micaela Schnitzler Parker, Michele S. Stanley, Aaron Kaplan, Lise Caron, Till Weber, Uma Maheswari, E. Virginia Armbrust, and Chris Bowler PMCID: PMC2173943 Importance of a C-Terminal Conserved Region of Chk1 for Checkpoint Function Carmela Palermo, Justin C. Hope, Greg A. Freyer, Hui Rao, and Nancy C. Walworth PMCID: PMC2173936 urg1: A Uracil-Regulatable Promoter System for Fission Yeast with Short Induction and Repression Times Stephen Watt, Juan Mata, Luis López-Maury, Samuel Marguerat, Gavin Burns, and Jürg Bähler PMCID: PMC2174524 The Role of Temporally Coarse Form Processing during Binocular Rivalry Jeroen J. A. van Boxtel, David Alais, Casper J. Erkelens, and Raymond van Ee PMCID: PMC2173937 Y-Chromosome Based Evidence for Pre-Neolithic Origin of the Genetically Homogeneous but Diverse Sardinian Population: Inference for Association Scans Daniela Contu, Laura Morelli, Federico Santoni, Jamie W. Foster, Paolo Francalacci, and Francesco Cucca PMCID: PMC2174525 Climate Influence on Deep Sea Populations Joan B. Company, Pere Puig, Francesc Sardà, Albert Palanques, Mikel Latasa, and Renate Scharek PMCID: PMC2174526 Protection by the NDI1 Gene against Neurodegeneration in a Rotenone Rat Model of Parkinson's Disease Mathieu Marella, Byoung Boo Seo, Eiko Nakamaru-Ogiso, J. Timothy Greenamyre, Akemi Matsuno-Yagi, and Takao Yagi PMCID: PMC2175531 Rasl11b Knock Down in Zebrafish Suppresses One-Eyed-Pinhead Mutant Phenotype Guillaume Pézeron, Guillaume Lambert, Thomas Dickmeis, Uwe Strähle, Frédéric M. Rosa, and Philippe Mourrain PMCID: PMC2186344 Sex Specific Gene Regulation and Expression QTLs in Mouse Macrophages from a Strain Intercross Jeffrey M. Bhasin, Enakshi Chakrabarti, Dao-Quan Peng, Aneesh Kulkarni, Xi Chen, and Jonathan D. Smith PMCID: PMC2174529 Adr1 and Cat8 Mediate Coactivator Recruitment and Chromatin Remodeling at Glucose-Regulated Genes Rhiannon K. Biddick, G. Lynn Law, and Elton T. Young PMCID: PMC2175534 Distortions of Subjective Time Perception Within and Across Senses Virginie van Wassenhove, Dean V. Buonomano, Shinsuke Shimojo, and Ladan Shams PMCID: PMC2174530 Predicting the Impact of Long-Term Temperature Changes on the Epidemiology and Control of Schistosomiasis: A Mechanistic Model Tara D. Mangal, Steve Paterson, and Andrew Fenton PMCID: PMC2190776 Potential Impacts of Climatic Change on European Breeding Birds Brian Huntley, Yvonne C. Collingham, Stephen G. Willis, and Rhys E. Green PMCID: PMC2186378 Gene Characterization Index: Assessing the Depth of Gene Annotation Danielle Kemmer, Raf M. Podowski, Dimas Yusuf, Jochen Brumm, Warren Cheung, Claes Wahlestedt, Boris Lenhard, and Wyeth W. Wasserman PMCID: PMC2194620 Sensitivity of IFN-γ Release Assay to Detect Latent Tuberculosis Infection Is Retained in HIV-Infected Patients but Dependent on HIV/AIDS Progression Farba Karam, Fatou Mbow, Helen Fletcher, Cheikh S. Senghor, Koura D. Coulibaly, Andrea M. LeFevre, Ndeye F. Ngom Gueye, Tandakha Dieye, Papa S. Sow, Souleymane Mboup, and Christian Lienhardt PMCID: PMC2174527 Auditory ERPs to Stimulus Deviance in an Awake Chimpanzee (Pan troglodytes): Towards Hominid Cognitive Neurosciences Ari Ueno, Satoshi Hirata, Kohki Fuwa, Keiko Sugama, Kiyo Kusunoki, Goh Matsuda, Hirokata Fukushima, Kazuo Hiraki, Masaki Tomonaga, and Toshikazu Hasegawa PMCID: PMC2174528 A Mitochondrial Kinase Complex Is Essential to Mediate an ERK1/2-Dependent Phosphorylation of a Key Regulatory Protein in Steroid Biosynthesis Cecilia Poderoso, Daniela P. Converso, Paula Maloberti, Alejandra Duarte, Isabel Neuman, Soledad Galli, Fabiana Cornejo Maciel, Cristina Paz, María C. Carreras, Juan J. Poderoso, and Ernesto J. Podestá PMCID: PMC2175533 Antibiotics Threaten Wildlife: Circulating Quinolone Residues and Disease in Avian Scavengers Jesús Á. Lemus, Guillermo Blanco, Javier Grande, Bernardo Arroyo, Marino García-Montijano, and Felíx Martínez PMCID: PMC2186382 Antiretroviral Therapy in the Malawi Defence Force: Access, Treatment Outcomes and Impact on Mortality Alfred C. Banda, Simon D. Makombe, Andreas Jahn, Hannock Tweya, Stuart Chuka, Joseph Kwong-Leung Yu, Bethany Hedt, Ralf Weigel, Amon Nkhata, Erik J. Schouten, Kelita Kamoto, and Anthony D. Harries PMCID: PMC2180195 Lysine-Specific Demethylase 1 (LSD1) Is Required for the Transcriptional Repression of the Telomerase Reverse Transcriptase (hTERT) Gene Qingjun Zhu, Cheng Liu, Zheng Ge, Xiaolei Fang, Xi Zhang, Klas Strååt, Magnus Björkholm, and Dawei Xu PMCID: PMC2180196 Drosophila cbl Is Essential for Control of Cell Death and Cell Differentiation during Eye Development Yuan Wang, Christian Werz, Dongbin Xu, Zhihong Chen, Ying Li, Ernst Hafen, and Andreas Bergmann PMCID: PMC2180199 Yeast Screens Identify the RNA Polymerase II CTD and SPT5 as Relevant Targets of BRCA1 Interaction Craig B. Bennett, Tammy J. Westmoreland, Carmel S. Verrier, Carrie A. B. Blanchette, Tiffany L. Sabin, Hemali P. Phatnani, Yuliya V. Mishina, Gudrun Huper, Alice L. Selim, Ernest R. Madison, Dominique D. Bailey, Adebola I. Falae, Alvaro Galli, John A. Olson, Jr, Arno L. Greenleaf, and Jeffrey R. Marks PMCID: PMC2174531 Beyond Parkinson Disease: Amyotrophic Lateral Sclerosis and the Axon Guidance Pathway Timothy G. Lesnick, Eric J. Sorenson, J. Eric Ahlskog, John R. Henley, Lina Shehadeh, Spiridon Papapetropoulos, and Demetrius M. Maraganore PMCID: PMC2175528 Genome Biology of Actinobacillus pleuropneumoniae JL03, an Isolate of Serotype 3 Prevalent in China Zhuofei Xu, Yan Zhou, Liangjun Li, Rui Zhou, Shaobo Xiao, Yun Wan, Sihua Zhang, Kai Wang, Wei Li, Lu Li, Hui Jin, Mingsong Kang, Baolige Dalai, Tingting Li, Lei Liu, Yangyi Cheng, Lei Zhang, Tao Xu, Huajun Zheng, Shiying Pu, Bofei Wang, Wenyi Gu, Xiang-Lin Zhang, Geng-Feng Zhu, Shengyue Wang, Guo-Ping Zhao, and Huanchun Chen PMCID: PMC2175527 Islet-Like Clusters Derived from Mesenchymal Stem Cells in Wharton's Jelly of the Human Umbilical Cord for Transplantation to Control Type 1 Diabetes Kuo Ching Chao, Kuo Fang Chao, Yu Show Fu, and Shing Hwa Liu PMCID: PMC2180192 Capillary Regeneration in Scleroderma: Stem Cell Therapy Reverses Phenotype? Jo N. Fleming, Richard A. Nash, D. O. McLeod, David F. Fiorentino, Howard M. Shulman, M. Kari Connolly, Jerry A. Molitor, Gretchen Henstorf, Robert Lafyatis, David K. Pritchard, Lawrence D. Adams, Daniel E. Furst, and Stephen M. Schwartz PMCID: PMC2175530 The Neuro-Glial Properties of Adipose-Derived Adult Stromal (ADAS) Cells Are Not Regulated by Notch 1 and Are Not Derived from Neural Crest Lineage Philip C. Wrage, Thi Tran, Khai To, Edward W. Keefer, Kelly A. Ruhn, John Hong, Supriya Hattangadi, Isaac Treviño, and Malú G. Tansey PMCID: PMC2180194 Patterns of Neurogenesis and Amplitude of Reelin Expression Are Essential for Making a Mammalian-Type Cortex Tadashi Nomura, Masanori Takahashi, Yoshinobu Hara, and Noriko Osumi PMCID: PMC2175532 On the Origin and Spread of the Scab Disease of Apple: Out of Central Asia Pierre Gladieux, Xiu-Guo Zhang, Damien Afoufa-Bastien, Rosa-Maria Valdebenito Sanhueza, Mohamed Sbaghi, and Bruno Le Cam PMCID: PMC2186383 The Sorcerer II Global Ocean Sampling Expedition: Metagenomic Characterization of Viruses within Aquatic Microbial Samples Shannon J. Williamson, Douglas B. Rusch, Shibu Yooseph, Aaron L. Halpern, Karla B. Heidelberg, John I. Glass, Cynthia Andrews-Pfannkoch, Douglas Fadrosh, Christopher S. Miller, Granger Sutton, Marvin Frazier, and J. Craig Venter PMCID: PMC2186209 Identification of Novel Pro-Migratory, Cancer-Associated Genes Using Quantitative, Microscopy-Based Screening Suha Naffar-Abu-Amara, Tal Shay, Meirav Galun, Naomi Cohen, Steven J. Isakoff, Zvi Kam, and Benjamin Geiger PMCID: PMC2195451 The Epidemics of Donations: Logistic Growth and Power-Laws Frank Schweitzer and Robert Mach PMCID: PMC2190793 Deconstructing Insight: EEG Correlates of Insightful Problem Solving Simone Sandkühler and Joydeep Bhattacharya PMCID: PMC2180197 Highly Conserved Non-Coding Sequences and the 18q Critical Region for Short Stature: A Common Mechanism of Disease? Flavio Rizzolio, Silvia Bione, Cinzia Sala, Carla Tribioli, Roberto Ciccone, Orsetta Zuffardi, Natascia di Iorgi, Mohamad Maghnie, and Daniela Toniolo PMCID: PMC2180198 A Technique for Characterizing the Development of Rhythms in Bird Song Sigal Saar and Partha P. Mitra PMCID: PMC2180191 The P2Y13 Met-158-Thr Polymorphism, Which Is in Linkage Disequilibrium with the P2Y12 Locus, Is Not Associated with Acute Myocardial Infarction Stefan Amisten, Oscar Ö. Braun, Lovisa Johansson, Martin Ridderstråle, Olle Melander, and David Erlinge PMCID: PMC2186379 Complement Activity in the Egg Cytosol of Zebrafish Danio rerio: Evidence for the Defense Role of Maternal Complement Components Zhiping Wang, Shicui Zhang, Guangfeng Wang, and Yan An PMCID: PMC2194919 Conditional Immortalization of Human B Cells by CD40 Ligation Martina Wiesner, Caroline Zentz, Christine Mayr, Rainer Wimmer, Wolfgang Hammerschmidt, Reinhard Zeidler, and Andreas Moosmann PMCID: PMC2180193 Safety and Immunogenicity of an AMA-1 Malaria Vaccine in Malian Adults: Results of a Phase 1 Randomized Controlled Trial Mahamadou A. Thera, Ogobara K. Doumbo, Drissa Coulibaly, Dapa A. Diallo, Abdoulaye K. Kone, Ando B. Guindo, Karim Traore, Alassane Dicko, Issaka Sagara, Mahamadou S. Sissoko, Mounirou Baby, Mady Sissoko, Issa Diarra, Amadou Niangaly, Amagana Dolo, Modibo Daou, Sory I. Diawara, D. Gray Heppner, V. Ann Stewart, Evelina Angov, Elke S. Bergmann-Leitner, David E. Lanar, Sheetij Dutta, Lorraine Soisson, Carter L. Diggs, Amanda Leach, Alex Owusu, Marie-Claude Dubois, Joe Cohen, Jason N. Nixon, Aric Gregson, Shannon L. Takala, Kirsten E. Lyke, and Christopher V. Plowe PMCID: PMC2186380 Repeat Length and RNA Expression Level Are Not Primary Determinants in CUG Expansion Toxicity in Drosophila Models Gwenn Le Mée, Nader Ezzeddine, Michèle Capri, and Ounissa Aït-Ahmed PMCID: PMC2186381 What Happens in Between? Human Oscillatory Brain Activity Related to Crossmodal Spatial Cueing Maja U. Trenner, Hauke R. Heekeren, Markus Bauer, Konstanze Rössner, Rüdiger Wenzel, Arno Villringer, and Manfred Fahle PMCID: PMC2186384 A Microfluidic Device for Temporally Controlled Gene Expression and Long-Term Fluorescent Imaging in Unperturbed Dividing Yeast Cells Gilles Charvin, Frederick R. Cross, and Eric D. Siggia PMCID: PMC2194624 Two Independent Positive Feedbacks and Bistability in the Bcl-2 Apoptotic Switch Jun Cui, Chun Chen, Haizhu Lu, Tingzhe Sun, and Pingping Shen PMCID: PMC2194625 fMRI Evidence for a Cortical Hierarchy of Pitch Pattern Processing Lauren Stewart, Tobias Overath, Jason D. Warren, Jessica M. Foxton, and Timothy D. Griffiths PMCID: PMC2198945 A Trial of the Efficacy, Safety and Impact on Drug Resistance of Four Drug Regimens for Seasonal Intermittent Preventive Treatment for Malaria in Senegalese Children Cheikh Sokhna, Badara Cissé, El Hadj Bâ, Paul Milligan, Rachel Hallett, Colin Sutherland, Oumar Gaye, Denis Boulanger, Kirsten Simondon, François Simondon, Geoffrey Targett, Jo Lines, Brian Greenwood, and Jean-François Trape PMCID: PMC2198946 Natural Selection and Adaptive Evolution of Leptin in the Ochotona Family Driven by the Cold Environmental Stress Jie Yang, Zhen Long Wang, Xin Quan Zhao, De Peng Wang, De Lin Qi, Bao Hong Xu, Yong Hong Ren, and Hui Fang Tian PMCID: PMC2194619 Differential Phagocytosis of White versus Opaque Candida albicans by Drosophila and Mouse Phagocytes Matthew B. Lohse and Alexander D. Johnson PMCID: PMC2198939 SAVVY Vaginal Gel (C31G) for Prevention of HIV Infection: A Randomized Controlled Trial in Nigeria Paul J. Feldblum, Adesina Adeiga, Rashidi Bakare, Silver Wevill, Anja Lendvay, Fatimah Obadaki, M. Onikepe Olayemi, Lily Wang, Kavita Nanda, and Wes Rountree PMCID: PMC2190795 No Effect of One-Year Treatment with Indomethacin on Alzheimer's Disease Progression: A Randomized Controlled Trial Daniëlle de Jong, René Jansen, Willibrord Hoefnagels, Marja Jellesma-Eggenkamp, Marcel Verbeek, George Borm, and Berry Kremer PMCID: PMC2194921 Taxol Crystals Can Masquerade as Stabilized Microtubules Margit Foss, Buck W. L. Wilcox, G. Bradley Alsop, and Dahong Zhang PMCID: PMC2194920 Mammalian Cells Change Volume during Mitosis Emmanuel Boucrot and Tomas Kirchhausen PMCID: PMC2198941 Does the Effectiveness of Control Measures Depend on the Influenza Pandemic Profile? Solen Kernéis, Rebecca F. Grais, Pierre-Yves Boëlle, Antoine Flahault, and Elisabeta Vergu PMCID: PMC2198944 Genomewide Expression Analysis in Zebrafish mind bomb Alleles with Pancreas Defects of Different Severity Identifies Putative Notch Responsive Genes Ashok Hegde, Nick Chuanxin Qiu, Xuehui Qiu, Steven Hao-Kee Ho, Kenny Qi-Ye Tay, Joshy George, Felicia Soo Lee Ng, Kunde Ramamoorthy Govindarajan, Zhiyuan Gong, Sinnakaruppan Mathavan, and Yun-Jin Jiang PMCID: PMC2195453 Ectopic Expression of AID in a Non-B Cell Line Triggers A ![[ratio]](corehtml/pmc/pmcents/x2236.gif) T and G:C Point Mutations in Non-Replicating Episomal Vectors Tihana Jovanic, Benjamin Roche, Géraldine Attal-Bonnefoy, Olivier Leclercq, and François Rougeon PMCID: PMC2195452 Isocitrate Dehydrogenase of Helicobacter pylori Potentially Induces Humoral Immune Response in Subjects with Peptic Ulcer Disease and Gastritis M. Abid Hussain, Shaik A. Naveed, Leonardo A. Sechi, Sarita Ranjan, Ayesha Alvi, Irshad Ahmed, Akash Ranjan, Sangita Mukhopadhyay, and Niyaz Ahmed PMCID: PMC2195454 Seasonal Changes in Mood and Behavior Are Linked to Metabolic Syndrome Reeta Rintamäki, Sharon Grimaldi, Ani Englund, Jari Haukka, Timo Partonen, Antti Reunanen, Arpo Aromaa, and Jouko Lönnqvist PMCID: PMC2190794 The Vitamin D Receptor Is a Wnt Effector that Controls Hair Follicle Differentiation and Specifies Tumor Type in Adult Epidermis Héctor G. Pálmer, Fernando Anjos-Afonso, Geert Carmeliet, Hikaru Takeda, and Fiona M. Watt PMCID: PMC2198947 Transcriptional Regulation of an Evolutionary Conserved Intergenic Region of CDT2-INTS7 Hiroki Nakagawa, Moe Tategu, Rieko Yamauchi, Kaori Sasaki, Sota Sekimachi, and Kenichi Yoshida PMCID: PMC2194621 Analysis of Amino Acid Variation in the P2 Domain of the GII-4 Norovirus VP1 Protein Reveals Putative Variant-Specific Epitopes David J. Allen, Jim J. Gray, Chris I. Gallimore, Jacqueline Xerry, and Miren Iturriza-Gómara PMCID: PMC2194622 A Novel RNA Transcript with Antiapoptotic Function Is Silenced in Fragile X Syndrome Ahmad M. Khalil, Mohammad Ali Faghihi, Farzaneh Modarresi, Shaun P. Brothers, and Claes Wahlestedt PMCID: PMC2194623 Genome-Wide and Functional Annotation of Human E3 Ubiquitin Ligases Identifies MULAN, a Mitochondrial E3 that Regulates the Organelle's Dynamics and Signaling Wei Li, Mario H. Bengtson, Axel Ulbrich, Akio Matsuda, Venkateshwar A. Reddy, Anthony Orth, Sumit K. Chanda, Serge Batalov, and Claudio A. P. Joazeiro PMCID: PMC2198940 Group II Introns Break New Boundaries: Presence in a Bilaterian's Genome Yvonne Vallès, Kenneth M. Halanych, and Jeffrey L. Boore PMCID: PMC2198948 Multiplex RT-PCR Amplification of HIV Genes to Create a Completely
Autologous DC-Based Immunotherapy for the Treatment of HIV Infection Irina Tcherepanova, Jason Harris, Aijing Starr, Jaclyn Cleveland, Helen Ketteringham, David Calderhead, Joe Horvatinovich, Don Healey, and Charles A. Nicolette PMCID: PMC2211536 An Excellent Monitoring System for Surface Ubiquitination-Induced Internalization in Mammals Eiji Goto, Mari Mito-Yoshida, Mika Uematsu, Masami Aoki, Yohei Matsuki, Mari Ohmura-Hoshino, Hak Hotta, Makoto Miyagishi, and Satoshi Ishido PMCID: PMC2204058 Hsc70 Focus Formation at the Periphery of HSV-1 Transcription Sites Requires ICP27 Ling Li, Lisa A. Johnson, Jenny Q. Dai-Ju, and Rozanne M. Sandri-Goldin PMCID: PMC2200795 The CDK-Activating Kinase (CAK) Csk1 Is Required for Normal Levels of Homologous Recombination and Resistance to DNA Damage in Fission Yeast Hilary B. Gerber, Yana Pikman, and Robert P. Fisher PMCID: PMC2200797 Evidence of Blood Stage Efficacy with a Virosomal Malaria Vaccine in a Phase IIa Clinical Trial Fiona M. Thompson, David W. Porter, Shinji L. Okitsu, Nicole Westerfeld, Denise Vogel, Stephen Todryk, Ian Poulton, Simon Correa, Claire Hutchings, Tamara Berthoud, Susanna Dunachie, Laura Andrews, Jack L. Williams, Robert Sinden, Sarah C. Gilbert, Gerd Pluschke, Rinaldo Zurbriggen, and Adrian V. S. Hill PMCID: PMC2204057 Coronavirus Spike Protein Inhibits Host Cell Translation by Interaction with eIF3f Han Xiao, Ling Hui Xu, Yoshiyuki Yamada, and Ding Xiang Liu PMCID: PMC2204050 Shark Attacks in Dakar and the Cap Vert Peninsula, Senegal: Low Incidence despite High Occurrence of Potentially Dangerous Species Sébastien Trape PMCID: PMC2211397 MHC-IIB Filament Assembly and Cellular Localization Are Governed by the Rod Net Charge Michael Rosenberg, Ravid Straussman, Ami Ben-Ya'acov, Daniel Ronen, and Shoshana Ravid PMCID: PMC2204051 Multi-Timescale Perceptual History Resolves Visual Ambiguity Jan W. Brascamp, Tomas H. J. Knapen, Ryota Kanai, André J. Noest, Raymond van Ee, and Albert V. van den Berg PMCID: PMC2204053 Transmissibility of the Influenza Virus in the 1918 Pandemic Laura Forsberg White and Marcello Pagano PMCID: PMC2204055 Genome-Wide Survey and Developmental Expression Mapping of Zebrafish SET Domain-Containing Genes Xiao-Jian Sun, Peng-Fei Xu, Ting Zhou, Ming Hu, Chun-Tang Fu, Yong Zhang, Yi Jin, Yi Chen, Sai-Juan Chen, Qiu-Hua Huang, Ting Xi Liu, and Zhu Chen PMCID: PMC2200798 A Novel Genetic Screen Implicates Elm1 in the Inactivation of the Yeast Transcription Factor SBF Emily N. Manderson, Mohan Malleshaiah, and Stephen W. Michnick PMCID: PMC2198942 Cross-Clade Protective Immune Responses to Influenza Viruses with H5N1 HA and NA Elicited by an Influenza Virus-Like Particle Rick A. Bright, Donald M. Carter, Corey J. Crevar, Franklin R. Toapanta, Jonathan D. Steckbeck, Kelly S. Cole, Niranjan M. Kumar, Peter Pushko, Gale Smith, Terrence M. Tumpey, and Ted M. Ross PMCID: PMC2200794 The Enduring Hypoxic Response of Mycobacterium tuberculosis Tige R. Rustad, Maria I. Harrell, Reiling Liao, and David R. Sherman PMCID: PMC2198943 Polyglutamine Expansion Accelerates the Dynamics of Ataxin-1 and Does Not Result in Aggregate Formation Hilde A. Krol, Przemek M. Krawczyk, Klazien S. Bosch, Jacob A. Aten, Elly M. Hol, and Eric A. Reits PMCID: PMC2200796 Human and Chimpanzee Gene Expression Differences Replicated in Mice Fed Different Diets Mehmet Somel, Hilliary Creely, Henriette Franz, Uwe Mueller, Michael Lachmann, Philipp Khaitovich, and Svante Pääbo PMCID: PMC2200793 Symmetric Sensorimotor Somatotopy Simon A. Overduin and Philip Servos PMCID: PMC2200828 Prelude to Passion: Limbic Activation by “Unseen” Drug and Sexual Cues Anna Rose Childress, Ronald N. Ehrman, Ze Wang, Yin Li, Nathan Sciortino, Jonathan Hakun, William Jens, Jesse Suh, John Listerud, Kathleen Marquez, Teresa Franklin, Daniel Langleben, John Detre, and Charles P. O'Brien PMCID: PMC2204052 Reconstitution of Mdm2-Dependent Post-Translational Modifications of p53 in Yeast Barbara Di Ventura, Charlotta Funaya, Claude Antony, Michael Knop, and Luis Serrano PMCID: PMC2200829 Differential Screening of Phage-Ab Libraries by Oligonucleotide Microarray Technology Paolo Monaci, Alessandra Luzzago, Claudia Santini, Alessandra De Pra, Mirko Arcuri, Francesca Magistri, Alessandro Bellini, Helenia Ansuini, Maria Ambrosio, Virginia Ammendola, Maria Giulia Bigotti, Agostino Cirillo, Maurizio Nuzzo, Annamaria Assunta Nasti, Philippe Neuner, Laura Orsatti, Monica Pezzanera, Andrea Sbardellati, Giuseppe Silvestre, Paolo Uva, Valentina Viti, Gaetano Barbato, Stefano Colloca, Anna Demartis, Emanuele De Rinaldis, Saverio Giampaoli, Armin Lahm, Fabio Palombo, Fabio Talamo, Alessandra Vitelli, Alfredo Nicosia, and Riccardo Cortese PMCID: PMC2204054 Light Plays an Essential Role in Intracellular Distribution of Auxin Efflux Carrier PIN2 in Arabidopsis thaliana Ashverya Laxmi, Jianwei Pan, Mustafa Morsy, and Rujin Chen PMCID: PMC2200863 K+ Channel Regulator KCR1 Suppresses Heart Rhythm by Modulating the Pacemaker Current If Guido Michels, Fikret Er, Ismail F. Khan, Jeannette Endres-Becker, Mathias C. Brandt, Natig Gassanov, David C. Johns, and Uta C. Hoppe PMCID: PMC2204056 Lineage Diversion of T Cell Receptor Transgenic Thymocytes Revealed by Lineage Fate Mapping Takeshi Egawa, Taras Kreslavsky, Dan R. Littman, and Harald von Boehmer PMCID: PMC2211402 Evolution of a Complex Locus: Exon Gain, Loss and Divergence at the Gr39a Locus in Drosophila Anastasia Gardiner, Daniel Barker, Roger K. Butlin, William C. Jordan, and Michael G. Ritchie PMCID: PMC2204066 Homology Modeling of Dissimilatory APS Reductases (AprBA) of Sulfur-Oxidizing and Sulfate-Reducing Prokaryotes Birte Meyer and Jan Kuever PMCID: PMC2211403 Protecting Biodiversity when Money Matters: Maximizing Return on Investment Emma C. Underwood, M. Rebecca Shaw, Kerrie A. Wilson, Peter Kareiva, Kirk R. Klausmeyer, Marissa F. McBride, Michael Bode, Scott A. Morrison, Jonathan M. Hoekstra, and Hugh P. Possingham PMCID: PMC2212107 Formation and Differentiation of Multiple Mesenchymal Lineages during Lung Development Is Regulated by β-catenin Signaling Stijn P. De Langhe, Gianni Carraro, Denise Tefft, Changgong Li, Xin Xu, Yang Chai, Parviz Minoo, Mohammad K. Hajihosseini, Jacques Drouin, Vesa Kaartinen, and Savério Bellusci PMCID: PMC2211394 Selective Gene Expression by Postnatal Electroporation during Olfactory Interneuron Neurogenesis Alexander T. Chesler, Claire E. Le Pichon, Jessica H. Brann, Ricardo C. Araneda, Dong-Jing Zou, and Stuart Firestein PMCID: PMC2204067 Chimpanzee Autarky Sarah F. Brosnan, Mark F. Grady, Susan P. Lambeth, Steven J. Schapiro, and Michael J. Beran PMCID: PMC2204064 Peripheral Blood Endothelial Progenitors as Potential Reservoirs of Kaposi's Sarcoma-Associated Herpesvirus Silvia Della Bella, Adriano Taddeo, Maria L. Calabrò, Lucia Brambilla, Monica Bellinvia, Elisa Bergamo, Mario Clerici, and Maria L. Villa PMCID: PMC2204065 A Novel ZAP-70 Dependent FRET Based Biosensor Reveals Kinase Activity at both the Immunological Synapse and the Antisynapse Clotilde Randriamampita, Pierre Mouchacca, Bernard Malissen, Didier Marguet, Alain Trautmann, and Annemarie Coffman Lellouch PMCID: PMC2211399 Ex Vivo Cytokine mRNA Levels Correlate with Changing Clinical Status of Ethiopian TB Patients and their Contacts Over Time Liya Wassie, Abebech Demissie, Abraham Aseffa, Markos Abebe, Lawrence Yamuah, Hiwot Tilahun, Beyene Petros, Graham Rook, Alimuddin Zumla, Peter Andersen, T. Mark Doherty, and for the VACSEL Study Group PMCID: PMC2211401 Anti-Human Tissue Factor Antibody Ameliorated Intestinal Ischemia Reperfusion-Induced Acute Lung Injury in Human Tissue Factor Knock-In Mice Xiaolin He, Bing Han, Marco Mura, Li Li, Marcelo Cypel, Avery Soderman, Kristen Picha, Jing Yang, and Mingyao Liu PMCID: PMC2211395 A Biomedically Enriched Collection of 7000 Human ORF Clones Andreas Rolfs, Yanhui Hu, Lars Ebert, Dietmar Hoffmann, Dongmei Zuo, Niro Ramachandran, Jacob Raphael, Fontina Kelley, Seamus McCarron, Daniel A. Jepson, Binghua Shen, Munira M. A. Baqui, Joseph Pearlberg, Elena Taycher, Craig DeLoughery, Andreas Hoerlein, Bernhard Korn, and Joshua LaBaer PMCID: PMC2211400 Radiocarbon Dating of the Human Eye Lens Crystallines Reveal Proteins without Carbon Turnover throughout Life Niels Lynnerup, Henrik Kjeldsen, Steffen Heegaard, Christina Jacobsen, and Jan Heinemeier PMCID: PMC2211393 Increase in Non-AIDS Related Conditions as Causes of Death among HIV-Infected Individuals in the HAART Era in Brazil Antonio G. Pacheco, Suely H. Tuboi, José C. Faulhaber, Lee H. Harrison, and Mauro Schechter PMCID: PMC2211396 Benefits of Stimulus Congruency for Multisensory Facilitation of Visual Learning Robyn S. Kim, Aaron R. Seitz, and Ladan Shams PMCID: PMC2211398 |
