| | Case Report Varicella zoster virus acute retinal necrosis following eye contusion: case report Petra Svozílková, Eva Říhová, Pavel Diblík, Pavel Kuthan, Zdeněk Kovařík, and Bohdana Kalvodová PMCID: PMC1208964 Commentaries Bacteriophages: The viruses for all seasons of molecular biology Jim D Karam PMCID: PMC1079957 International Committee on Taxonomy of Viruses and the 3,142 unassigned species CM Fauquet and D Fargette PMCID: PMC1208960 Hypothesis The Severe Acute Respiratory Syndrome (SARS)-coronavirus 3a protein may function as a modulator of the trafficking properties of the spike protein Yee-Joo Tan PMCID: PMC549520 Replicative Homeostasis: A fundamental mechanism mediating selective viral replication and escape mutation Richard Sallie PMCID: PMC552327 Replicative homeostasis II: Influence of polymerase fidelity on RNA virus quasispecies biology: Implications for immune recognition, viral autoimmunity and other "virus receptor" diseases Richard Sallie PMCID: PMC1260030 Methodology Development of a real-time QPCR assay for the detection of RV2 lineage-specific rhadinoviruses in macaques and baboons A Gregory Bruce, Angela M Bakke, Margaret E Thouless, and Timothy M Rose PMCID: PMC544863 Quantitative assessment of the effect of uracil-DNA glycosylase on amplicon DNA degradation and RNA amplification in reverse transcription-PCR Steven B Kleiboeker PMCID: PMC1087508 Stereophysicochemical variability plots highlight conserved antigenic areas in Flaviviruses Catherine H Schein, Bin Zhou, and Werner Braun PMCID: PMC1112618 Application of FTA technology for sampling, recovery and molecular characterization of viral pathogens and virus-derived transgenes from plant tissues Joseph Ndunguru, Nigel J Taylor, Jitender Yadav, Haytham Aly, James P Legg, Terry Aveling, Graham Thompson, and Claude M Fauquet PMCID: PMC1180858 Use of a novel cell-based fusion reporter assay to explore the host range of human respiratory syncytial virus F protein Patrick J Branigan, Changbao Liu, Nicole D Day, Lester L Gutshall, Robert T Sarisky, and Alfred M Del Vecchio PMCID: PMC1190219 An inexpensive and rapid diagnostic method of Koi Herpesvirus (KHV) infection by loop-mediated isothermal amplification Hatem Soliman and Mansour El-Matbouli PMCID: PMC1266402 Development of an improved microneutralization assay for respiratory syncytial virus by automated plaque counting using imaging analysis Edyta Zielinska, Daiqing Liu, Hong-Yin Wu, Jorge Quiroz, Ruth Rappaport, and Da-Ping Yang PMCID: PMC1308871 A general method for nested RT-PCR amplification and sequencing the complete HCV genotype 1 open reading frame Ermei Yao, John E Tavis, and the Virahep-C Study Group PMCID: PMC1325262 Research The involvement of survival signaling pathways in rubella-virus induced apoptosis Samantha Cooray, Li Jin, and Jennifer M Best PMCID: PMC544859 An immunocompromised BALB/c mouse model for respiratory syncytial virus infection Xiaoyuan Kong, Gary R Hellermann, Geoff Patton, Mukesh Kumar, Aruna Behera, Timothy S Randall, Jian Zhang, Richard F Lockey, and Shyam S Mohapatra PMCID: PMC549044 Chromatography paper strip sampling of enteric adenoviruses type 40 and 41 positive stool specimens Kalina T Zlateva, Piet Maes, Mustafizur Rahman, and Marc Van Ranst PMCID: PMC549523 Reference gene selection for quantitative real-time PCR analysis in virus infected cells: SARS corona virus, Yellow fever virus, Human Herpesvirus-6, Camelpox virus and Cytomegalovirus infections Aleksandar Radonić, Stefanie Thulke, Hi-Gung Bae, Marcel A Müller, Wolfgang Siegert, and Andreas Nitsche PMCID: PMC549079 A new example of viral intein in Mimivirus Hiroyuki Ogata, Didier Raoult, and Jean-Michel Claverie PMCID: PMC549080 Inhibition of human immunodeficiency virus type-1 (HIV-1) glycoprotein-mediated cell-cell fusion by immunor (IM28) Donatien Mavoungou, Virginie Poaty-Mavoungou, Marie-Yvonne Akoume, Brice Ongali, and Elie Mavoungou PMCID: PMC552330 Simian immunodeficiency virus (SIV) envelope quasispecies transmission and evolution in infant rhesus macaques after oral challenge with uncloned SIVmac251: increased diversity is associated with neutralizing antibodies and improved survival in previously immunized animals Jennifer L Greenier, Koen KA Van Rompay, David Montefiori, Patricia Earl, Bernard Moss, and Marta L Marthas PMCID: PMC552328 Recombinant Tula hantavirus shows reduced fitness but is able to survive in the presence of a parental virus: analysis of consecutive passages in a cell culture Angelina Plyusnina and Alexander Plyusnin PMCID: PMC552329 Mutational study of sapovirus expression in insect cells Grant S Hansman, Kazuhiko Katayama, Tomoichiro Oka, Katsuro Natori, and Naokazu Takeda PMCID: PMC553994 Synergistic inhibition of human cytomegalovirus replication by interferon-alpha/beta and interferon-gamma Bruno Sainz, Jr, Heather L LaMarca, Robert F Garry, and Cindy A Morris PMCID: PMC554982 Maternal plasma viral load and neutralizing/enhancing antibodies in vertical transmission of HIV: A non-randomized prospective study Paul Kamara, Loyda Melendez-Guerrero, Miguel Arroyo, Heidi Weiss, and Pauline Jolly PMCID: PMC555584 Plant viral intergenic DNA sequence repeats with transcription enhancing activity Jeff Velten, Kevin J Morey, and Christopher I Cazzonelli PMCID: PMC554758 Phosphorylation of HIV Tat by PKR increases interaction with TAR RNA and enhances transcription Liliana Endo-Munoz, Tammra Warby, David Harrich, and Nigel AJ McMillan PMCID: PMC556014 Soilborne wheat mosaic virus (SBWMV) 19K protein belongs to a class of cysteine rich proteins that suppress RNA silencing Jeannie Te, Ulrich Melcher, Amanda Howard, and Jeanmarie Verchot-Lubicz PMCID: PMC555535 Molecular biodiversity of cassava begomoviruses in Tanzania: evolution of cassava geminiviruses in Africa and evidence for East Africa being a center of diversity of cassava geminiviruses J Ndunguru, JP Legg, TAS Aveling, G Thompson, and CM Fauquet PMCID: PMC1079959 Modulation of macrophage functions by sheeppox virus provides clues to understand interaction of the virus with host immune system Abdel-Aziz S Abu-EL-Saad and Ahmed S Abdel-Moneim PMCID: PMC1079960 Origin-independent plasmid replication occurs in vaccinia virus cytoplasmic factories and requires all five known poxvirus replication factors Frank S De Silva and Bernard Moss PMCID: PMC1079961 Typing of human rotaviruses: Nucleotide mismatches between the VP7 gene and primer are associated with genotyping failure Mustafizur Rahman, Rasheda Sultana, Goutam Podder, Abu SG Faruque, Jelle Matthijnssens, Khalequz Zaman, Robert F Breiman, David A Sack, Marc Van Ranst, and Tasnim Azim PMCID: PMC1079962 Two dimensional VOPBA reveals laminin receptor (LAMR1) interaction with dengue virus serotypes 1, 2 and 3 Phaik Hooi Tio, Wan Wui Jong, and Mary Jane Cardosa PMCID: PMC1079963 Ultrastructural studies on dengue virus type 2 infection of cultured human monocytes Jesus A Mosquera, Juan Pablo Hernandez, Nereida Valero, Luz Marina Espina, and German J Añez PMCID: PMC1082913 Physicochemical characterization of vibriophage N5 Anindito Sen and Amar N Ghosh PMCID: PMC1090621 New Vibrio cholerae O1 Biotype ElTor bacteriophages Anindito Sen and Amar N Ghosh PMCID: PMC1087507 Host-derived pathogenicity islands in poxviruses Melissa Da Silva and Chris Upton PMCID: PMC1087509 Identification of a truncated nucleoprotein in avian metapneumovirus-infected cells encoded by a second AUG, in-frame to the full-length gene Rene Alvarez and Bruce S Seal PMCID: PMC1087890 Eco-epidemiological analysis of dengue infection during an outbreak of dengue fever, India Anita Chakravarti and Rajni Kumaria PMCID: PMC1087891 Characterization of the protease domain of Rice tungro bacilliform virus responsible for the processing of the capsid protein from the polyprotein Philippe Marmey, Ana Rojas-Mendoza, Alexandre de Kochko, Roger N Beachy, and Claude M Fauquet PMCID: PMC1087892 Barriers to coliphage infection of commensal intestinal flora of laboratory mice Laura M Kasman PMCID: PMC1097760 Amphotropic murine leukaemia virus envelope protein is associated with cholesterol-rich microdomains Christiane Beer, Lene Pedersen, and Manfred Wirth PMCID: PMC1087893 Transmission of human hepatitis C virus from patients in secondary cells for long term culture Dennis Revie, Ravi S Braich, David Bayles, Nickolas Chelyapov, Rafat Khan, Cheryl Geer, Richard Reisman, Ann S Kelley, John G Prichard, and S Zaki Salahuddin PMCID: PMC1090622 The caveolae-mediated sv40 entry pathway bypasses the golgi complex en route to the endoplasmic reticulum Leonard C Norkin and Dmitry Kuksin PMCID: PMC1087894 EBV latent membrane protein 1 abundance correlates with patient age but not with metastatic behavior in north African nasopharyngeal carcinomas Abdelmajid Khabir, Hela Karray, Sandrine Rodriguez, Mathieu Rosé, Jamel Daoud, Mounir Frikha, Tahia Boudawara, Jaap Middeldorp, Rachid Jlidi, and Pierre Busson PMCID: PMC1112617 Comparison of amplification enzymes for Hepatitis C Virus quasispecies analysis Stephen J Polyak, Daniel G Sullivan, Michael A Austin, James Y Dai, Margaret C Shuhart, Karen L Lindsay, Herbert L Bonkovsky, Adrian M Di Bisceglie, William M Lee, Chihiro Morishima, David R Gretch, and the HALT-C Trial Group PMCID: PMC1090623 Intracellular localization of Crimean-Congo Hemorrhagic Fever (CCHF) virus glycoproteins Sebastian Haferkamp, Lisa Fernando, Tino F Schwarz, Heinz Feldmann, and Ramon Flick PMCID: PMC1090624 Development and characterization of positively selected brain-adapted SIV Peter J Gaskill, Debbie D Watry, Tricia H Burdo, and Howard S Fox PMCID: PMC1145188 Respiratory syncytial virus-induced acute and chronic airway disease is independent of genetic background: An experimental murine model Susana Chávez-Bueno, Asunción Mejías, Ana M Gómez, Kurt D Olsen, Ana M Ríos, Mónica Fonseca-Aten, Octavio Ramilo, and Hasan S Jafri PMCID: PMC1183251 Possible active origin of replication in the double stranded extended form of the left terminus of LuIII and its implication on the replication model of the parvovirus Nanette Diffoot-Carlo, Lisandra Vélez-Pérez, and Idaris de Jesús-Maldonado PMCID: PMC1185569 Neutrophil elastase, an acid-independent serine protease, facilitates reovirus uncoating and infection in U937 promonocyte cells Joseph W Golden and Leslie A Schiff PMCID: PMC1180477 Peptide inhibitors of dengue virus and West Nile virus infectivity Yancey M Hrobowski, Robert F Garry, and Scott F Michael PMCID: PMC1177995 Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA Brian J Geiss, Theodore C Pierson, and Michael S Diamond PMCID: PMC1174879 Human cytomegalovirus uracil DNA glycosylase associates with ppUL44 and accelerates the accumulation of viral DNA Mark N Prichard, Heather Lawlor, Gregory M Duke, Chengjun Mo, Zhaoti Wang, Melissa Dixon, George Kemble, and Earl R Kern PMCID: PMC1185570 Re-evaluating the role of natural killer cells in innate resistance to herpes simplex virus type 1 William P Halford, Jennifer L Maender, and Bryan M Gebhardt PMCID: PMC1188082 Inhibition of Henipavirus fusion and infection by heptad-derived peptides of the Nipah virus fusion glycoprotein Katharine N Bossart, Bruce A Mungall, Gary Crameri, Lin-Fa Wang, Bryan T Eaton, and Christopher C Broder PMCID: PMC1208959 Genetic characterization of measles viruses isolated in Turkey during 2000 and 2001 Gulay Korukluoglu, Stephanie Liffick, Dalya Guris, Fumio Kobune, Paul A Rota, William J Bellini, Ali Ceylan, and Meliksah Ertem PMCID: PMC1201177 HBx M130K and V131I (T-A) mutations in HBV genotype F during a follow-up study in chronic carriers Bernal León, Lizeth Taylor, Minor Vargas, Ronald B Luftig, Federico Albertazzi, Libia Herrero, and Kirsten Visona PMCID: PMC1199628 Detection, quantification and genotyping of Herpes Simplex Virus in cervicovaginal secretions by real-time PCR: a cross sectional survey Esther AN Aryee, Robin L Bailey, Angels Natividad-Sancho, Steve Kaye, and Martin J Holland PMCID: PMC1236615 Mimivirus relatives in the Sargasso sea Elodie Ghedin and Jean-Michel Claverie PMCID: PMC1215527 Development of an in vitro cleavage assay system to examine vaccinia virus I7L cysteine proteinase activity Chelsea M Byrd and Dennis E Hruby PMCID: PMC1198262 Evidence of HIV exposure and transient seroreactivity in archived HIV-negative severe hemophiliac sera Scott A Tenenbaum, Cindy A Morris, Steve S Alexander, Harris E McFerrin, Robert F Garry, and Cindy A Leissinger PMCID: PMC1232868 Evidence that spontaneous reactivation of herpes virus does not occur in mice Bryan M Gebhardt and William P Halford PMCID: PMC1208961 Matrix attachment regions as targets for retroviral integration Chassidy N Johnson and Laura S Levy PMCID: PMC1198263 Chloroquine is a potent inhibitor of SARS coronavirus infection and spread Martin J Vincent, Eric Bergeron, Suzanne Benjannet, Bobbie R Erickson, Pierre E Rollin, Thomas G Ksiazek, Nabil G Seidah, and Stuart T Nichol PMCID: PMC1232869 Baculovirus-mediated promoter assay and transcriptional analysis of white spot syndrome virus orf427 gene Liqun Lu, Hai Wang, Ivanus Manopo, Li Yu, and Jimmy Kwang PMCID: PMC1208962 Strategically examining the full-genome of dengue virus type 3 in clinical isolates reveals its mutation spectra Day-Yu Chao, Chwan-Chuen King, Wei-Kung Wang, Wei-June Chen, Hui-Lin Wu, and Gwong-Jen J Chang PMCID: PMC1208963 The SARS Coronavirus S Glycoprotein Receptor Binding Domain: Fine Mapping and Functional Characterization Samitabh Chakraborti, Ponraj Prabakaran, Xiaodong Xiao, and Dimiter S Dimitrov PMCID: PMC1236967 Human enterovirus 71 subgenotype B3 lacks coxsackievirus A16-like neurovirulence in mice infection Yoke-Fun Chan and Sazaly AbuBakar PMCID: PMC1215528 Characterisation of parapoxviruses isolated from Norwegian semi-domesticated reindeer (Rangifer tarandus tarandus) Joern Klein and Morten Tryland PMCID: PMC1242257 Novel type I interferon IL-28A suppresses hepatitis C viral RNA replication Haizhen Zhu, Mike Butera, David R Nelson, and Chen Liu PMCID: PMC1232870 Involvement of PKR and RNase L in translational control and induction of apoptosis after Hepatitis C polyprotein expression from a Vaccinia virus recombinant Carmen E Gómez, Andrée Marie Vandermeeren, María Angel García, Elena Domingo-Gil, and Mariano Esteban PMCID: PMC1242258 Functional inaccessibility of quiescent herpes simplex virus genomes Rebecca L Minaker, Karen L Mossman, and James R Smiley PMCID: PMC1310514 Stimulation of poliovirus RNA synthesis and virus maturation in a HeLa cell-free in vitro translation-RNA replication system by viral protein 3CDpro David Franco, Harsh B Pathak, Craig E Cameron, Bart Rombaut, Eckard Wimmer, and Aniko V Paul PMCID: PMC1315353 Effect of ethanol on innate antiviral pathways and HCV replication in human liver cells Courtney R Plumlee, Catherine A Lazaro, Nelson Fausto, and Stephen J Polyak PMCID: PMC1318489 Phylogenetic evidence for the distinction of Saaremaa and Dobrava hantaviruses Tarja Sironen, Antti Vaheri, and Alexander Plyusnin PMCID: PMC1322228 Reviews CODEHOP-mediated PCR – A powerful technique for the identification and characterization of viral genomes Timothy M Rose PMCID: PMC1079958 Molecular advances in the cell biology of SARS-CoV and current disease prevention strategies Caren J Stark and CD Atreya PMCID: PMC1087510 Adeno-associated virus: from defective virus to effective vector Manuel AFV Gonçalves PMCID: PMC1131931 Macrophages and cytokines in the early defence against herpes simplex virus Svend Ellermann-Eriksen PMCID: PMC1215526 Human herpesvirus 8 – A novel human pathogen Daniel C Edelman PMCID: PMC1243244 Review of the temporal and geographical distribution of measles virus genotypes in the prevaccine and postvaccine eras Michaela A Riddell, Jennifer S Rota, and Paul A Rota PMCID: PMC1318492 Short Reports A conditional-lethal vaccinia virus mutant demonstrates that the I7L gene product is required for virion morphogenesis Chelsea M Byrd and Dennis E Hruby PMCID: PMC548685 Differential localization of HPV16 E6 splice products with E6-associated protein Kulthida Vaeteewoottacharn, Siriphatr Chamutpong, Mathurose Ponglikitmongkol, and Peter C Angeletti PMCID: PMC1180478 Genetic lesions within the 3a gene of SARS-CoV Timothy HP Tan, Timothy Barkham, Burtram C Fielding, Chih-Fong Chou, Shuo Shen, Seng Gee Lim, Wanjin Hong, and Yee-Joo Tan PMCID: PMC1183252 Giant viruses in the oceans: the 4th Algal Virus Workshop Jean-Michel Claverie PMCID: PMC1188081 G0/G1 arrest and apoptosis induced by SARS-CoV 3b protein in transfected cells Xiaoling Yuan, Yajun Shan, Zhenhu Zhao, Jiapei Chen, and Yuwen Cong PMCID: PMC1190220 Constitutive expression of Atlantic salmon Mx1 protein in CHSE-214 cells confers resistance to Infectious Salmon Anaemia virus Molly JT Kibenge, Khalid Munir, and Frederick SB Kibenge PMCID: PMC1224881 Hepatitis B virus X protein interacts with β5 subunit of heterotrimeric guanine nucleotide binding protein Siew Hui Lwa and Wei Ning Chen PMCID: PMC1215529 Importance of disulphide bonds for vaccinia virus L1R protein function Robert E Blouch, Chelsea M Byrd, and Dennis E Hruby PMCID: PMC1318495 Packaging of actin into Ebola virus VLPs Ziying Han and Ronald N Harty PMCID: PMC1334228 Study Protocol Hepatitis B Virus: Inactive carriers Sanjeev Kumar Sharma, Nitin Saini, and Yogesh Chwla PMCID: PMC1253537 |
