CIT Training Course #490

#490

Structural Biology Laboratory


Description:
	This session is intended as a laboratory follow-up for attendees of the Structural Biology Lecture Series. The session will be an open laboratory in which attendees bring their own structural biology problems. Drs. Darrell Hurt and Michael Dolan from the NIAID Bioinformatics and Scientific IT Program (BSIP) will be available to assist attendees with information on the use of Structural Biology software and provide suggestions. Software covered in the course included: Structural Biology Viewers Pymol DeepView Chimera VMD Structural Biology Databases< PDB ModBase Genomic Threading Database Dali, VAST, SSM Structural Biology Web Servers SWISS-MODEL, CPHmodels 2.0, 3D-JIGSAW, ESyPred3D, PS2, PHYRE PredictProtein, SAM, PSIPRED, JUFO PROSPECT, GenTHREADER, LOOPP HEX, PatchDock, DOT, ZDOCK MolProbity DomPred, GINZU Rosetta Structure Prediction Loop Modeling Protein Docking Molecular Dynamics Servers: HEX, PatchDock/FireDock/SymmDock, RosettaDock Validation: KFC hot-spot finder, iMolTalk, LPC CSU This is a follow-up to the lecture series on computational structural biology presented by the NIAID Bioinformatics and Scientific IT Program. Please click on the following links to view and/or register for the other lectures. Protein Structure Analysis: Introduction and Visualization Introduction to Homology Modeling: Sequence Alignment and Template Selection Advanced Homology Modeling: Model Optimization, Alignment Improvement (Threading), Protein Complexes Loop Modeling and Protein Folding: Rosetta, Secondary Structure Predictions, Structure Validation, Database Mining Protein-Protein Docking: Complexes Revisited, Constraints, Multi-domain Proteins in silico Drug Screening: Small Molecule Docking Molecular Dynamics: Macromolecular Simulations Protein and Interface Design: A Real-world Example - Antibody Design, Publication-Quality Graphics

Who should attend:
	NIH staff with Structural Biology research problems who have either attended the Structural Biology Lecture Series or have used some of the programs covered and would like advice or consultation.

Instructor(s):
	Dr. Darrell Hurt, Ph.D., NIAID OCICB Bioinformatics and Computational Biosciences Branch (BCBB)

Time Required:
	2 hours

Sections Available:
-- Concluded --	490-09F	December 10	9:00 - 11:00	Building 12A, Room B51

NOTE: Although this course has already taken place, we'll put you on a waiting list for the next available session.

Course Listing

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