| | Commentaries Can visco-elastic phase separation, macromolecular crowding and colloidal physics explain nuclear organisation? Francisco J Iborra PMCID: PMC1853075 Lens stem cells may reside outside the lens capsule: an hypothesis Susann G Remington and Rita A Meyer PMCID: PMC1914343 Research A stochastic model for circadian rhythms from coupled ultradian oscillators Roderick Edwards, Richard Gibson, Reinhard Illner, and Verner Paetkau PMCID: PMC1794229 Directed cell migration in the presence of obstacles Ramon Grima PMCID: PMC1797164 Bayesian profiling of molecular signatures to predict event times Dabao Zhang and Min Zhang PMCID: PMC1796541 Morphological instability and cancer invasion: a 'splashing water drop' analogy Caterina Guiot, Pier P Delsanto, and Thomas S Deisboeck PMCID: PMC1794228 A computational model for functional mapping of genes that regulate intra-cellular circadian rhythms Tian Liu, Xueli Liu, Yunmei Chen, and Rongling Wu PMCID: PMC1803780 Relating a calcium indicator signal to the unperturbed calcium concentration time-course Alexander Borst and Henry DI Abarbanel PMCID: PMC1800305 Inclusion of the glucocorticoid receptor in a hypothalamic pituitary adrenal axis model reveals bistability Shakti Gupta, Eric Aslakson, Brian M Gurbaxani, and Suzanne D Vernon PMCID: PMC1804264 Biological effects of deuteronation: ATP synthase as an example Abdullah Olgun PMCID: PMC1808445 Collective consciousness and its pathologies: Understanding the failure of AIDS control and treatment in the United States Rodrick M Wallace, Mindy T Fullilove, Robert E Fullilove, and Deborah N Wallace PMCID: PMC1820776 A mathematical model for the adenylosuccinate synthetase reaction involved in purine biosynthesis Evgeniya A Oshchepkova-Nedosekina and Vitalii A Likhoshvai PMCID: PMC1808444 Theoretical size distribution of fossil taxa: analysis of a null model William J Reed and Barry D Hughes PMCID: PMC1845141 Dynamically simulating the interaction of midazolam and the CYP3A4 inhibitor itraconazole using individual coupled whole-body physiologically-based pharmacokinetic (WB-PBPK) models Michaela Vossen, Michael Sevestre, Christoph Niederalt, In-Jin Jang, Stefan Willmann, and Andrea N Edginton PMCID: PMC1853074 A mathematical model separates quantitatively the cytostatic and cytotoxic effects of a HER2 tyrosine kinase inhibitor Peter Hinow, Shizhen Emily Wang, Carlos L Arteaga, and Glenn F Webb PMCID: PMC1852549 Does reservoir host mortality enhance transmission of West Nile virus? Ivo M Foppa and Andrew Spielman PMCID: PMC1884135 Anomalous ion diffusion within skeletal muscle transverse tubule networks Paul R Shorten and Tanya K Soboleva PMCID: PMC1899483 Distinguishing enzymes using metabolome data for the hybrid dynamic/static method Nobuyoshi Ishii, Yoichi Nakayama, and Masaru Tomita PMCID: PMC1892778 Time variations in the transmissibility of pandemic influenza in Prussia, Germany, from 1918–19 Hiroshi Nishiura PMCID: PMC1892008 Optimization principles of dendritic structure Hermann Cuntz, Alexander Borst, and Idan Segev PMCID: PMC1924501 Modeling the effect of levothyroxine therapy on bone mass density in postmenopausal women: a different approach leads to new inference Babak Mohammadi, Vahid Haghpanah, Seyed Mohammad Tavangar, and Bagher Larijani PMCID: PMC1914344 The relationship between twitch depression and twitch fade during neuromuscular block produced by vecuronium: correlation with the release of acetylcholine Shashi B Bhatt, Jack Kohl, Anton Amann, and Vladimir Nigrovic PMCID: PMC1939837 A general framework for quantifying the effects of DNA repair inhibitors on radiation sensitivity as a function of dose Anthony J Chalmers, Soeren M Bentzen, and Francesca M Buffa PMCID: PMC1950494 Numerical modelling of label-structured cell population growth using CFSE distribution data Tatyana Luzyanina, Dirk Roose, Tim Schenkel, Martina Sester, Stephan Ehl, Andreas Meyerhans, and Gennady Bocharov PMCID: PMC1950697 Can a single model explain both breast cancer and prostate cancer? A Edward Friedman PMCID: PMC2014741 Could increased axial wall stress be responsible for the development of atheroma in the proximal segment of myocardial bridges? Pierre-André Doriot, Pierre-André Dorsaz, and Jacques Noble PMCID: PMC2020464 A continuum mathematical model of endothelial layer maintenance and senescence Ying Wang, Baltazar D Aguda, and Avner Friedman PMCID: PMC1988791 Variance in multiplex suspension array assays: microsphere size variation impact Brian P Hanley, Li Xing, and R Holland Cheng PMCID: PMC2041949 Variance in multiplex suspension array assays: intraplex method improves reliability Brian Hanley PMCID: PMC2000462 Molecular model of the outward facing state of the human P-glycoprotein (ABCB1), and comparison to a model of the human MRP5 (ABCC5) Aina W Ravna, Ingebrigt Sylte, and Georg Sager PMCID: PMC2211457 The allosteric modulation of lipases and its possible biological relevance Jens Köhler and Bernhard Wünsch PMCID: PMC2020465 A discrete Single Delay Model for the Intra-Venous Glucose Tolerance Test Simona Panunzi, Pasquale Palumbo, and Andrea De Gaetano PMCID: PMC2072949 Cable properties and propagation velocity in a long single chain of simulated myocardial cells Lakshminarayanan Ramasamy and Nicholas Sperelakis PMCID: PMC2071913 A statistical approach to estimating the strength of cell-cell interactions under the differential adhesion hypothesis Mathieu Emily and Olivier François PMCID: PMC2213651 Optimization of biotechnological systems through geometric programming Alberto Marin-Sanguino, Eberhard O Voit, Carlos Gonzalez-Alcon, and Nestor V Torres PMCID: PMC2231360 Hypertabastic survival model Mohammad A Tabatabai, Zoran Bursac, David K Williams, and Karan P Singh PMCID: PMC2169222 Analysis of arterial intimal hyperplasia: review and hypothesis Vladimir M Subbotin PMCID: PMC2169223 Coordination of the dynamics of yeast sphingolipid metabolism during the diauxic shift Fernando Alvarez-Vasquez, Kellie J Sims, Eberhard O Voit, and Yusuf A Hannun PMCID: PMC2203994 Regular mosaic pattern development: A study of the interplay between lateral inhibition, apoptosis and differential adhesion Gregory J Podgorski, Mayank Bansal, and Nicholas S Flann PMCID: PMC2203995 Simulation of propofol anaesthesia for intracranial decompression using brain hypothermia treatment Lu Gaohua and Hidenori Kimura PMCID: PMC2217543 Measuring the functional sequence complexity of proteins Kirk K Durston, David KY Chiu, David L Abel, and Jack T Trevors PMCID: PMC2217542 Reconstruction and flux analysis of coupling between metabolic pathways of astrocytes and neurons: application to cerebral hypoxia Tunahan Çakιr, Selma Alsan, Hale Saybaşιlι, Ata Akιn, and Kutlu Ö Ülgen PMCID: PMC2246127 A unified framework of immunological and epidemiological dynamics for the spread of viral infections in a simple network-based population David M Vickers and Nathaniel D Osgood PMCID: PMC2248185 Simulating non-small cell lung cancer with a multiscale agent-based model Zhihui Wang, Le Zhang, Jonathan Sagotsky, and Thomas S Deisboeck PMCID: PMC2259313 Reviews Immunostimulation and Immunoinhibition of Premalignant Lesions Richmond T Prehn PMCID: PMC1797005 Does the immune reaction cause malignant transformation by disrupting cell-to-cell or cell-to-matrix communications? Richmond T Prehn PMCID: PMC1871575 Nonequilibrium thermodynamics and energy efficiency in weight loss diets Richard D Feinman and Eugene J Fine PMCID: PMC1947950 Inflammation: a way to understanding the evolution of portal hypertension María-Angeles Aller, Jorge-Luis Arias, Arturo Cruz, and Jaime Arias PMCID: PMC2206015 The Proteomic Code: a molecular recognition code for proteins Jan C Biro PMCID: PMC2206014 Software The Basic Immune Simulator: An agent-based model to study the interactions between innate and adaptive immunity Virginia A Folcik, Gary C An, and Charles G Orosz PMCID: PMC2186321 |
