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Volume 13(12);  December 2004
Articles
Structure of human brain fructose 1,6-(bis)phosphate aldolase: Linking isozyme structure with function
Tracy L. Arakaki, John A. Pezza, Michelle A. Cronin, Chris E. Hopkins, Danna B. Zimmer, Dean R. Tolan, and Karen N. Allen
Protein Sci. 2004 December; 13(12): 3077–3084. doi: 10.1110/ps.04915904.
PMCID: PMC2287316
Native and nonnative conformational preferences in the urea-unfolded state of barstar
Neel S. Bhavesh, Juhi Juneja, Jayant B. Udgaonkar, and Ramakrishna V. Hosur
Protein Sci. 2004 December; 13(12): 3085–3091. doi: 10.1110/ps.04805204.
PMCID: PMC2287308
Specificity in lipases: A computational study of transesterification of sucrose
Gloria Fuentes, Anthonio Ballesteros, and Chandra S. Verma
Protein Sci. 2004 December; 13(12): 3092–3103. doi: 10.1110/ps.04724504.
PMCID: PMC2287317
Infrequent cavity-forming fluctuations in HPr from Staphylococcus carnosus revealed by pressure- and temperature-dependent tyrosine ring flips
Mineyuki Hattori, Hua Li, Hiroaki Yamada, Kazuyuki Akasaka, Wolfgang Hengstenberg, Wolfram Gronwald, and Hans Robert Kalbitzer
Protein Sci. 2004 December; 13(12): 3104–3114. doi: 10.1110/ps.04877104.
PMCID: PMC2287304
Solvation and the hidden thermodynamics of a zinc finger probed by nonstandard repair of a protein crevice
Marcel J. Lachenmann, John E. Ladbury, Xiuqi Qian, Kun Huang, Rupinder Singh, and Michael A. Weiss
Protein Sci. 2004 December; 13(12): 3115–3126. doi: 10.1110/ps.04866404.
PMCID: PMC2287320
Modulation of the ligand binding properties of the transcription repressor NmrA by GATA-containing DNA and site-directed mutagenesis
Heather K. Lamb, Jingshan Ren, Alison Park, Christopher Johnson, Kris Leslie, Simon Cocklin, Paul Thompson, Christopher Mee, Alan Cooper, David K. Stammers, and Alastair R. Hawkins
Protein Sci. 2004 December; 13(12): 3127–3138. doi: 10.1110/ps.04958904.
PMCID: PMC2287298
Simulation of the activation of α-chymotrypsin: Analysis of the pathway and role of the propeptide
Janka Mátrai, Gert Verheyden, Peter Krüger, and Yves Engelborghs
Protein Sci. 2004 December; 13(12): 3139–3150. doi: 10.1110/ps.04825004.
PMCID: PMC2287318
Possible role of region 152–156 in the structural duality of a peptide fragment from sheep prion protein
Simon Megy, Gildas Bertho, Sergey A. Kozin, Pascale Debey, Gaston Hui Bon Hoa, and Jean-Pierre Girault
Protein Sci. 2004 December; 13(12): 3151–3160. doi: 10.1110/ps.04745004.
PMCID: PMC2287313
Structural and functional analysis of the gpsA gene product of Archaeoglobus fulgidus: A glycerol-3-phosphate dehydrogenase with an unusual NADP+ preference
Shin-Ichi Sakasegawa, Christoph H. Hagemeier, Rudolf K. Thauer, Lars-O. Essen, and Seigo Shima
Protein Sci. 2004 December; 13(12): 3161–3171. doi: 10.1110/ps.04980304.
PMCID: PMC2287311
A model of the acid sphingomyelinase phosphoesterase domain based on its remote structural homolog purple acid phosphatase
Marian Seto, Marc Whitlow, Margaret A. McCarrick, Subha Srinivasan, Ying Zhu, Rene Pagila, Robert Mintzer, David Light, Anthony Johns, and Janet A. Meurer-Ogden
Protein Sci. 2004 December; 13(12): 3172–3186. doi: 10.1110/ps.04966204.
PMCID: PMC2287300
On the use of DXMS to produce more crystallizable proteins: Structures of the T. maritima proteins TM0160 and TM1171
Glen Spraggon, Dennis Pantazatos, Heath E. Klock, Ian A. Wilson, Virgil L. Woods, Jr., and Scott A. Lesley
Protein Sci. 2004 December; 13(12): 3187–3199. doi: 10.1110/ps.04939904.
PMCID: PMC2287321
Molecular modeling of family GH16 glycoside hydrolases: Potential roles for xyloglucan transglucosylases/hydrolases in cell wall modification in the poaceae
Marco Strohmeier, Maria Hrmova, Markus Fischer, Andrew J. Harvey, Geoffrey B. Fincher, and Jürgen Pleiss
Protein Sci. 2004 December; 13(12): 3200–3213. doi: 10.1110/ps.04828404.
PMCID: PMC2287310
Interaction of the N-terminal domain of Escherichia coli heat-shock protein ClpB and protein aggregates during chaperone activity
Naoki Tanaka, Yasushi Tani, Hiroyuki Hattori, Tomoko Tada, and Shigeru Kunugi
Protein Sci. 2004 December; 13(12): 3214–3221. doi: 10.1110/ps.04780704.
PMCID: PMC2287305
Specific recognition of a dsDNA sequence motif by an immunoglobulin VH homodimer
Hulin Jin, Jorge Sepúlveda, and Oscar R. Burrone
Protein Sci. 2004 December; 13(12): 3222–3229. doi: 10.1110/ps.04921704.
PMCID: PMC2287315
Comparative computational analysis of prion proteins reveals two fragments with unusual structural properties and a pattern of increase in hydrophobicity associated with disease-promoting mutations
Igor B. Kuznetsov and Shalom Rackovsky
Protein Sci. 2004 December; 13(12): 3230–3244. doi: 10.1110/ps.04833404.
PMCID: PMC2287303
Calcium(II) selectively induces α-synuclein annular oligomers via interaction with the C-terminal domain
Rachel Lowe, Dean L. Pountney, Poul Henning Jensen, Wei Ping Gai, and Nicolas H. Voelcker
Protein Sci. 2004 December; 13(12): 3245–3252. doi: 10.1110/ps.04879704.
PMCID: PMC2287302
Correspondence between anomalous m- and Δ Cp-values in protein folding
Daniel E. Otzen and Mikael Oliveberg
Protein Sci. 2004 December; 13(12): 3253–3263. doi: 10.1110/ps.04991004.
PMCID: PMC2287299
Studies on recombinant single chain Jacalin lectin reveal reduced affinity for saccharides despite normal folding like native Jacalin
Anagh A. Sahasrabuddhe, Sushama M. Gaikwad, M.V. Krishnasastry, and M. Islam Khan
Protein Sci. 2004 December; 13(12): 3264–3273. doi: 10.1110/ps.04968804.
PMCID: PMC2287297
Expression and purification of recombinant proteins from Escherichia coli: Comparison of an elastin-like polypeptide fusion with an oligohistidine fusion
Kimberly Trabbic-Carlson, Li Liu, Bumjoon Kim, and Ashutosh Chilkoti
Protein Sci. 2004 December; 13(12): 3274–3284. doi: 10.1110/ps.04931604.
PMCID: PMC2287301
Biochemical properties of V91G calmodulin: A calmodulin point mutation that deregulates muscle contraction in Drosophila
Bo Wang, Stephen R. Martin, Rhonda A. Newman, Susan L. Hamilton, Madeline A. Shea, Peter M. Bayley, and Kathleen M. Beckingham
Protein Sci. 2004 December; 13(12): 3285–3297. doi: 10.1110/ps.04928204.
PMCID: PMC2287309
Probabilistic cross-link analysis and experiment planning for high-throughput elucidation of protein structure
Xiaoduan Ye, Patrick K. O'Neil, Adrienne N. Foster, Michal J. Gajda, Jan Kosinski, Michal A. Kurowski, Janusz M. Bujnicki, Alan M. Friedman, and Chris Bailey-Kellogg
Protein Sci. 2004 December; 13(12): 3298–3313. doi: 10.1110/ps.04846604.
PMCID: PMC2287312
FTIR reveals structural differences between native β-sheet proteins and amyloid fibrils
Giorgia Zandomeneghi, Mark R.H. Krebs, Margaret G. McCammon, and Marcus Fändrich
Protein Sci. 2004 December; 13(12): 3314–3321. doi: 10.1110/ps.041024904.
PMCID: PMC2287307
For the Record
Analysis of side chain mobility among protein G B1 domain mutants with widely varying stabilities
Virginia A. Goehlert, Ewa Krupinska, Lynne Regan, and Martin J. Stone
Protein Sci. 2004 December; 13(12): 3322–3330. doi: 10.1110/ps.04926604.
PMCID: PMC2287306
Book Review
Artificial DNA: Methods and applications, edited by Y.E. Khudyakov and W.A. Fields. 2003.: Boca Raton, FL: CRC Press. 440 pp. $189.95 (hardcover).
Hans-Achim Wagenknecht
Protein Sci. 2004 December; 13(12): 3331–3332. doi: 10.1110/ps.041082704.
PMCID: PMC2287314
Award Address
2004 Irving Sigal Young Investigator Award
Jonathan S. Weissman and Erin K. O'Shea
Protein Sci. 2004 December; 13(12): 3333–3335. doi: 10.1110/ps.041134604.
PMCID: PMC2287319
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