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Volume 13(9);  September 2004
Articles
Crystal structure of a dimeric form of streptococcal pyrogenic exotoxin A (SpeA1)
Matthew D. Baker, Inessa Gendlina, Carleen M. Collins, and K. Ravi Acharya
Protein Sci. 2004 September; 13(9): 2285–2290. doi: 10.1110/ps.04826804.
PMCID: PMC2280022
Buried hydrophobic side-chains essential for the folding of the parallel β-helix domains of the P22 tailspike
Scott Betts, Cameron Haase-Pettingell, Kristen Cook, and Jonathan King
Protein Sci. 2004 September; 13(9): 2291–2303. doi: 10.1110/ps.04676704.
PMCID: PMC2280027
Lipid binding in rice nonspecific lipid transfer protein-1 complexes from Oryza sativa
Hui-Chun Cheng, Pei-Tsung Cheng, Peiyu Peng, Ping-Chiang Lyu, and Yuh-Ju Sun
Protein Sci. 2004 September; 13(9): 2304–2315. doi: 10.1110/ps.04799704.
PMCID: PMC2280015
Stabilizing roles of residual structure in the empty heme binding pockets and unfolded states of microsomal and mitochondrial apocytochrome b5
Aaron B. Cowley, Mario Rivera, and David R. Benson
Protein Sci. 2004 September; 13(9): 2316–2329. doi: 10.1110/ps.04817704.
PMCID: PMC2280026
Arginine 60 in the ArsC arsenate reductase of E. coli plasmid R773 determines the chemical nature of the bound As(III) product
Srini DeMel, Jin Shi, Philip Martin, Barry P. Rosen, and Brian F.P. Edwards
Protein Sci. 2004 September; 13(9): 2330–2340. doi: 10.1110/ps.04787204.
PMCID: PMC2280019
Sensitivity of molecular dynamics simulations to the choice of the X-ray structure used to model an enzymatic reaction
Mireia Garcia-Viloca, Tina D. Poulsen, Donald G. Truhlar, and Jiali Gao
Protein Sci. 2004 September; 13(9): 2341–2354. doi: 10.1110/ps.03504104.
PMCID: PMC2280009
On the modeling of snake venom serine proteinase interactions with benzamidine-based thrombin inhibitors
Elsa S. Henriques, Nelson Fonseca, and Maria João Ramos
Protein Sci. 2004 September; 13(9): 2355–2369. doi: 10.1110/ps.04746804.
PMCID: PMC2280023
Structure of the XPC binding domain of hHR23A reveals hydrophobic patches for protein interaction
Mariusz Kamionka and Juli Feigon
Protein Sci. 2004 September; 13(9): 2370–2377. doi: 10.1110/ps.04824304.
PMCID: PMC2280024
Solution structure of Escherichia coli Par10: The prototypic member of the Parvulin family of peptidyl-prolyl cis/trans isomerases
Angelika Kühlewein, Georg Voll, Birte Hernandez Alvarez, Horst Kessler, Gunter Fischer, Jens-Ulrich Rahfeld, and Gerd Gemmecker
Protein Sci. 2004 September; 13(9): 2378–2387. doi: 10.1110/ps.04756704.
PMCID: PMC2280006
Characterization of SLAC: A small laccase from Streptomyces coelicolor with unprecedented activity
Michael C. Machczynski, Erik Vijgenboom, Bart Samyn, and Gerard W. Canters
Protein Sci. 2004 September; 13(9): 2388–2397. doi: 10.1110/ps.04759104.
PMCID: PMC2280001
Long-range allosteric transitions in carbamoyl phosphate synthetase
James B. Thoden, Xinyi Huang, Jungwook Kim, Frank M. Raushel, and Hazel M. Holden
Protein Sci. 2004 September; 13(9): 2398–2405. doi: 10.1110/ps.04822704.
PMCID: PMC2280008
Biological activity, membrane-targeting modification, and crystallization of soluble human decay accelerating factor expressed in E. coli
Jennifer White, Petra Lukacik, Dirk Esser, Michael Steward, Naomi Giddings, Jeremy R. Bright, Sarah J. Fritchley, B. Paul Morgan, Susan M. Lea, Geoffrey P. Smith, and Richard A.G. Smith
Protein Sci. 2004 September; 13(9): 2406–2415. doi: 10.1110/ps.03455604.
PMCID: PMC2280017
The HU–DNA binding interaction probed with UV resonance Raman spectroscopy: Structural elements of specificity
Kristi Wojtuszewski and Ishita Mukerji
Protein Sci. 2004 September; 13(9): 2416–2428. doi: 10.1110/ps.04730204.
PMCID: PMC2280020
Insulin amyloid fibrillation at above 100°C: New insights into protein folding under extreme temperatures
Anubhav Arora, Chanki Ha, and Chan Beum Park
Protein Sci. 2004 September; 13(9): 2429–2436. doi: 10.1110/ps.04823504.
PMCID: PMC2280028
The effect of an ionic detergent on the natively unfolded β-dystroglycan ectodomain and on its interaction with α-dystroglycan
Manuela Bozzi, Enrico Di Stasio, Daniel O. Cicero, Bruno Giardina, Maurizio Paci, and Andrea Brancaccio
Protein Sci. 2004 September; 13(9): 2437–2445. doi: 10.1110/ps.04762504.
PMCID: PMC2280000
What can one learn from experiments about the elusive transition state?
Iksoo Chang, Marek Cieplak, Jayanth R. Banavar, and Amos Maritan
Protein Sci. 2004 September; 13(9): 2446–2457. doi: 10.1110/ps.04713804.
PMCID: PMC2280003
A directed evolution strategy for optimized export of recombinant proteins reveals critical determinants for preprotein discharge
Mustak A. Kaderbhai, Hazel M. Davey, and Naheed N. Kaderbhai
Protein Sci. 2004 September; 13(9): 2458–2469. doi: 10.1110/ps.04697304.
PMCID: PMC2280021
Hexa-histidin tag position influences disulfide structure but not binding behavior of in vitro folded N-terminal domain of rat corticotropin-releasing factor receptor type 2a
Jana Klose, Norbert Wendt, Sybille Kubald, Eberhard Krause, Klaus Fechner, Michael Beyermann, Michael Bienert, Rainer Rudolph, and Sven Rothemund
Protein Sci. 2004 September; 13(9): 2470–2475. doi: 10.1110/ps.04835904.
PMCID: PMC2280012
Interactions and chaperone function of αA-crystallin with T5P γC-crystallin mutant
Jack J-N Liang
Protein Sci. 2004 September; 13(9): 2476–2482. doi: 10.1110/ps.04815104.
PMCID: PMC2280011
Conformational stability and thermodynamic characterization of the lipoic acid bearing domain of human mitochondrial branched chain α-ketoacid dehydrogenase
Mandar T. Naik and Tai-Huang Huang
Protein Sci. 2004 September; 13(9): 2483–2492. doi: 10.1110/ps.04783104.
PMCID: PMC2280005
Both chaperone and isomerase functions of protein disulfide isomerase are essential for acceleration of the oxidative refolding and reactivation of dimeric alkaline protease inhibitor
Jui Pandhare and Vasanti Deshpande
Protein Sci. 2004 September; 13(9): 2493–2501. doi: 10.1110/ps.03552004.
PMCID: PMC2280025
Energetics of galactose– and glucose–aromatic amino acid interactions: Implications for binding in galactose-specific proteins
Mannargudi S. Sujatha, Yellamraju U. Sasidhar, and Petety V. Balaji
Protein Sci. 2004 September; 13(9): 2502–2514. doi: 10.1110/ps.04812804.
PMCID: PMC2280018
Investigation of the nature of the methionine–π interaction in β-hairpin peptide model systems
Chad D. Tatko and Marcey L. Waters
Protein Sci. 2004 September; 13(9): 2515–2522. doi: 10.1110/ps.04820104.
PMCID: PMC2280016
Modeling the structure of bound peptide ligands to major histocompatibility complex
Joo Chuan Tong, Tin Wee Tan, and Shoba Ranganathan
Protein Sci. 2004 September; 13(9): 2523–2532. doi: 10.1110/ps.04631204.
PMCID: PMC2279999
A fluorescence stopped-flow kinetic study of the conformational activation of α-chymotrypsin and several mutants
Gert Verheyden, Janka Matrai, Guido Volckaert, and Yves Engelborghs
Protein Sci. 2004 September; 13(9): 2533–2540. doi: 10.1110/ps.04709604.
PMCID: PMC2280002
Protein Structure Report
Solution structure of the human Grb14–SH2 domain and comparison with the structures of the human Grb7–SH2/erbB2 peptide complex and human Grb10–SH2 domain
Paul J. Scharf, Jill Witney, Roger Daly, and Barbara A. Lyons
Protein Sci. 2004 September; 13(9): 2541–2546. doi: 10.1110/ps.04884704.
PMCID: PMC2280013
For the Record
Substrate-induced asymmetry and channel closure revealed by the apoenzyme structure of Mycobacterium tuberculosis phosphopantetheine adenylyltransferase
Van K. Morris and Tina Izard
Protein Sci. 2004 September; 13(9): 2547–2552. doi: 10.1110/ps.04816904.
PMCID: PMC2280004
Analysis of the stability of multimeric proteins by effective ΔG and effective m-values
Chiwook Park and Susan Marqusee
Protein Sci. 2004 September; 13(9): 2553–2558. doi: 10.1110/ps.04811004.
PMCID: PMC2280007
Delineation and analysis of the conceptual data model implied by the “IUPAC Recommendations for Biochemical Nomenclature”
Susan Fox-Erlich, Timothy O. Martyn, Heidi J.C. Ellis, and Michael R. Gryk
Protein Sci. 2004 September; 13(9): 2559–2563. doi: 10.1110/ps.04810204.
PMCID: PMC2280010
Book Review
Protein protocols on CD-ROM, Version 2.0, edited by John M. Walker.: 2002. Totowa, NJ, USA: Humana Press. $595 (CD-ROM; content claimed to be more than 13,000 pages, with 2659 figures).
Protein purification protocols, 2nd ed., edited by Paul Cutler. 2004. Totowa, NJ, USA: Humana Press. 496 pp. $115 (hardcover).
Robert Shoeman
Protein Sci. 2004 September; 13(9): 2564–2565. doi: 10.1110/ps.04869804.
PMCID: PMC2280014
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