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Volume 15(3);  March 2006
Commentary
Woes of proline: A cautionary kinetic tale
Gary J. Pielak
Protein Sci. 2006 March; 15(3): 393–394. doi: 10.1110/ps.052051106.
PMCID: PMC2249760
Articles
Substitutions of prolines examine their role in kinetic trap formation of the caspase recruitment domain (CARD) of RICK
Yun-Ru Chen and A. Clay Clark
Protein Sci. 2006 March; 15(3): 395–409. doi: 10.1110/ps.051943006.
PMCID: PMC2249761
Fluorescence resonance energy transfer and molecular modeling studies on 4′,6-diamidino-2-phenylindole (DAPI) complexes with tubulin
José J. Arbildua, Juan E. Brunet, David M. Jameson, Maribel López, Esteban Nova, Rosalba Lagos, and Octavio Monasterio
Protein Sci. 2006 March; 15(3): 410–419. doi: 10.1110/ps.051862206.
PMCID: PMC2249762
Amyloid β-protein monomer structure: A computational and experimental study
Andrij Baumketner, Summer L. Bernstein, Thomas Wyttenbach, Gal Bitan, David B. Teplow, Michael T. Bowers, and Joan-Emma Shea
Protein Sci. 2006 March; 15(3): 420–428. doi: 10.1110/ps.051762406.
PMCID: PMC2249763
“Zero-length” cross-linking in solid state as an approach for analysis of protein–protein interactions
Ahmed El-Shafey, Nikola Tolic, Malin M. Young, Kenneth Sale, Richard D. Smith, and Vladimir Kery
Protein Sci. 2006 March; 15(3): 429–440. doi: 10.1110/ps.051685706.
PMCID: PMC2249764
Mimicking the action of GroEL in molecular dynamics simulations: Application to the refinement of protein structures
Hao Fan and Alan E. Mark
Protein Sci. 2006 March; 15(3): 441–448. doi: 10.1110/ps.051721006.
PMCID: PMC2249765
Genetic selection for protein solubility enabled by the folding quality control feature of the twin-arginine translocation pathway
Adam C. Fisher, Woojin Kim, and Matthew P. Delisa
Protein Sci. 2006 March; 15(3): 449–458. doi: 10.1110/ps.051902606.
PMCID: PMC2249766
Cooperative hydrogen bond interactions in the streptavidin–biotin system
David E. Hyre, Isolde Le Trong, Ethan A. Merritt, John F. Eccleston, N. Michael Green, Ronald E. Stenkamp, and Patrick S. Stayton
Protein Sci. 2006 March; 15(3): 459–467. doi: 10.1110/ps.051970306.
PMCID: PMC2249767
Role of Trp140 at subsite −6 on the maltohexaose production of maltohexaose-producing amylase from alkalophilic Bacillus sp.707
Ryuta Kanai, Keiko Haga, Toshihiko Akiba, Kunio Yamane, and Kazuaki Harata
Protein Sci. 2006 March; 15(3): 468–477. doi: 10.1110/ps.051877006.
PMCID: PMC2249768
Exploring the interaction between the protein kinase A catalytic subunit and caveolin-1 scaffolding domain with shotgun scanning, oligomer complementation, NMR, and docking
Aron M. Levin, John G. Coroneus, Melanie J. Cocco, and Gregory A. Weiss
Protein Sci. 2006 March; 15(3): 478–486. doi: 10.1110/ps.051911706.
PMCID: PMC2249769
The solution structure of the methylated form of the N-terminal 16-kDa domain of Escherichia coli Ada protein
Hiroto Takinowaki, Yasuhiro Matsuda, Takuya Yoshida, Yuji Kobayashi, and Tadayasu Ohkubo
Protein Sci. 2006 March; 15(3): 487–497. doi: 10.1110/ps.051786306.
PMCID: PMC2249770
Solution structure and backbone dynamics of an N-terminal ubiquitin-like domain in the GLUT4-regulating protein, TUG
M. Cristina Tettamanzi, Chenfei Yu, Jonathan S. Bogan, and Michael E. Hodsdon
Protein Sci. 2006 March; 15(3): 498–508. doi: 10.1110/ps.051901806.
PMCID: PMC2249771
A general model of G protein-coupled receptor sequences and its application to detect remote homologs
Markus Wistrand, Lukas Käll, and Erik L.L. Sonnhammer
Protein Sci. 2006 March; 15(3): 509–521. doi: 10.1110/ps.051745906.
PMCID: PMC2249772
Domain:domain interactions within Hop, the Hsp70/Hsp90 organizing protein, are required for protein stability and structure
Patricia E. Carrigan, Laura A. Sikkink, David F. Smith, and Marina Ramirez-Alvarado
Protein Sci. 2006 March; 15(3): 522–532. doi: 10.1110/ps.051810106.
PMCID: PMC2249773
Methionine oxidation of monomeric λ repressor: The denatured state ensemble under nondenaturing conditions
Preeti Chugha, Harvey J. Sage, and Terrence G. Oas
Protein Sci. 2006 March; 15(3): 533–542. doi: 10.1110/ps.051856406.
PMCID: PMC2249774
Physical characterization of MxiH and PrgI, the needle component of the type III secretion apparatus from Shigella and Salmonella
Numukunda Darboe, Roma Kenjale, Wendy L. Picking, William D. Picking, and C. Russell Middaugh
Protein Sci. 2006 March; 15(3): 543–552. doi: 10.1110/ps.051733506.
PMCID: PMC2249775
On the precision of experimentally determined protein folding rates and [var phi]-values
Miguel A. De Los Rios, B.K. Muralidhara, David Wildes, Tobin R. Sosnick, Susan Marqusee, Pernilla Wittung-Stafshede, Kevin W. Plaxco, and Ingo Ruczinski
Protein Sci. 2006 March; 15(3): 553–563. doi: 10.1110/ps.051870506.
PMCID: PMC2249776
Role of unfolded state heterogeneity and en-route ruggedness in protein folding kinetics
Paul A. Ellison and Silvia Cavagnero
Protein Sci. 2006 March; 15(3): 564–582. doi: 10.1110/ps.051758206.
PMCID: PMC2249777
Automated extraction of backbone deuteration levels from amide H/2H mass spectrometry experiments
Matthew Hotchko, Ganesh S. Anand, Elizabeth A. Komives, and Lynn F. Ten Eyck
Protein Sci. 2006 March; 15(3): 583–601. doi: 10.1110/ps.051774906.
PMCID: PMC2249778
Temperature-induced reversible conformational change in the first 100 residues of α-synuclein
Brian C. McNulty, Ashutosh Tripathy, Gregory B. Young, Lisa M. Charlton, Jillian Orans, and Gary J. Pielak
Protein Sci. 2006 March; 15(3): 602–608. doi: 10.1110/ps.051867106.
PMCID: PMC2249779
Octapeptide repeat insertions increase the rate of protease-resistant prion protein formation
Roger A. Moore, Christian Herzog, John Errett, David A. Kocisko, Kevin M. Arnold, Stanley F. Hayes, and Suzette A. Priola
Protein Sci. 2006 March; 15(3): 609–619. doi: 10.1110/ps.051822606.
PMCID: PMC2249780
Global structural rearrangement of the cell penetrating ribonuclease colicin E3 on interaction with phospholipid membranes
Khédidja Mosbahi, Daniel Walker, Richard James, Geoffrey R. Moore, and Colin Kleanthous
Protein Sci. 2006 March; 15(3): 620–627. doi: 10.1110/ps.051890306.
PMCID: PMC2249781
Protein Structure Report
Solution structure of PcFK1, a spider peptide active against Plasmodium falciparum
Cyril Pimentel, Soo-Jin Choi, Benjamin Chagot, Catherine Guette, Jean-Michel Camadro, and Hervé Darbon
Protein Sci. 2006 March; 15(3): 628–634. doi: 10.1110/ps.051860606.
PMCID: PMC2249782
For the Record
Monitoring protein aggregation during thermal unfolding in circular dichroism experiments
Sangeeta Benjwal, Shikha Verma, Klaus-Heinrich Röhm, and Olga Gursky
Protein Sci. 2006 March; 15(3): 635–639. doi: 10.1110/ps.051917406.
PMCID: PMC2249783
Site-specific labeling of proteins for single-molecule FRET by combining chemical and enzymatic modification
Marcus Jäger, Eyal Nir, and Shimon Weiss
Protein Sci. 2006 March; 15(3): 640–646. doi: 10.1110/ps.051851506.
PMCID: PMC2249784
Award Article
The early history of the ubiquitin field
Alexander Varshavsky
Protein Sci. 2006 March; 15(3): 647–654. doi: 10.1110/ps.052012306.
PMCID: PMC2249785
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