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Volume 15(11);  November 2006
Articles
Folding and misfolding mechanisms of the p53 DNA binding domain at physiological temperature
James S. Butler and Stewart N. Loh
Protein Sci. 2006 November; 15(11): 2457–2465. doi: 10.1110/ps.062324206.
PMCID: PMC2242404
Phage display selection of efficient glutamine-donor substrate peptides for transglutaminase 2
Zsolt Keresztessy, Éva Csősz, Jolán Hársfalvi, Krisztián Csomós, Joe Gray, Robert N. Lightowlers, Jeremy H. Lakey, Zoltán Balajthy, and László Fésüs
Protein Sci. 2006 November; 15(11): 2466–2480. doi: 10.1110/ps.051818406.
PMCID: PMC2242420
Insights into the architecture of the Ure2p yeast protein assemblies from helical twisted fibrils
Neil Ranson, Thusnelda Stromer, Luc Bousset, Ronald Melki, and Louise C. Serpell
Protein Sci. 2006 November; 15(11): 2481–2487. doi: 10.1110/ps.062215206.
PMCID: PMC2242408
Conserved F84 and P86 residues in αB-crystallin are essential to effectively prevent the aggregation of substrate proteins
Puttur Santhoshkumar and K. Krishna Sharma
Protein Sci. 2006 November; 15(11): 2488–2498. doi: 10.1110/ps.062338206.
PMCID: PMC2242417
A Consensus Data Mining secondary structure prediction by combining GOR V and Fragment Database Mining
Taner Z. Sen, Haitao Cheng, Andrzej Kloczkowski, and Robert L. Jernigan
Protein Sci. 2006 November; 15(11): 2499–2506. doi: 10.1110/ps.062125306.
PMCID: PMC2242411
Statistical potential for assessment and prediction of protein structures
Min-yi Shen and Andrej Sali
Protein Sci. 2006 November; 15(11): 2507–2524. doi: 10.1110/ps.062416606.
PMCID: PMC2242414
A fast method for the determination of fractional contributions to solvation in proteins
David Talavera, Antonio Morreale, Tim Meyer, Adam Hospital, Carles Ferrer-Costa, Josep Lluis Gelpi, Xavier de la Cruz, Robert Soliva, F. Javier Luque, and Modesto Orozco
Protein Sci. 2006 November; 15(11): 2525–2533. doi: 10.1110/ps.062406706.
PMCID: PMC2242413
Solution structure of the kinase-associated domain 1 of mouse microtubule-associated protein/microtubule affinity-regulating kinase 3
Naoya Tochio, Seizo Koshiba, Naohiro Kobayashi, Makoto Inoue, Takashi Yabuki, Masaaki Aoki, Eiko Seki, Takayoshi Matsuda, Yasuko Tomo, Yoko Motoda, Atsuo Kobayashi, Akiko Tanaka, Yoshihide Hayashizaki, Takaho Terada, Mikako Shirouzu, Takanori Kigawa, and Shigeyuki Yokoyama
Protein Sci. 2006 November; 15(11): 2534–2543. doi: 10.1110/ps.062391106.
PMCID: PMC2242405
Catalytic mechanism of cyclophilin as observed in molecular dynamics simulations: Pathway prediction and reconciliation of X-ray crystallographic and NMR solution data
Daniel Trzesniak and Wilfred F. van Gunsteren
Protein Sci. 2006 November; 15(11): 2544–2551. doi: 10.1110/ps.062356406.
PMCID: PMC2242407
NMR characterizations of an amyloidogenic conformational ensemble of the PI3K SH3 domain
Hee-Chul Ahn, Yen T.H. Le, Partha S. Nagchowdhuri, Eugene F. DeRose, Cindy Putnam-Evans, Robert E. London, John L. Markley, and Kwang Hun Lim
Protein Sci. 2006 November; 15(11): 2552–2557. doi: 10.1110/ps.062154306.
PMCID: PMC2242406
Prediction of residues in discontinuous B-cell epitopes using protein 3D structures
Pernille Haste Andersen, Morten Nielsen, and Ole Lund
Protein Sci. 2006 November; 15(11): 2558–2567. doi: 10.1110/ps.062405906.
PMCID: PMC2242418
Backbone dynamics of SDF-1α determined by NMR: Interpretation in the presence of monomer–dimer equilibrium
Olga K. Baryshnikova and Brian D. Sykes
Protein Sci. 2006 November; 15(11): 2568–2578. doi: 10.1110/ps.062255806.
PMCID: PMC2242403
Characterization of two potentially universal turn motifs that shape the repeated five-residues fold—Crystal structure of a lumenal pentapeptide repeat protein from Cyanothece 51142
Garry W. Buchko, Shuisong Ni, Howard Robinson, Eric A. Welsh, Himadri B. Pakrasi, and Michael A. Kennedy
Protein Sci. 2006 November; 15(11): 2579–2595. doi: 10.1110/ps.062407506.
PMCID: PMC2242410
Solvent-tuning the collapse and helix formation time scales of λ6-85*
Charles Dumont, Yoshitaka Matsumura, Seung Joong Kim, Jinsong Li, Elena Kondrashkina, Hiroshi Kihara, and Martin Gruebele
Protein Sci. 2006 November; 15(11): 2596–2604. doi: 10.1110/ps.062257406.
PMCID: PMC2242409
The crystal structure of the E. coli stress protein YciF
Aditya Hindupur, Deqian Liu, Yonghong Zhao, Henry D. Bellamy, Mark A. White, and Robert O. Fox
Protein Sci. 2006 November; 15(11): 2605–2611. doi: 10.1110/ps.062307706.
PMCID: PMC2242421
Stabilization of a binary protein complex by intein-mediated cyclization
Cy M. Jeffries, Stephen C. Graham, Philippa H. Stokes, Charles A. Collyer, J. Mitchell Guss, and Jacqueline M. Matthews
Protein Sci. 2006 November; 15(11): 2612–2618. doi: 10.1110/ps.062377006.
PMCID: PMC2242402
The crystal structure of a Cys25 → Ala mutant of human procathepsin S elucidates enzyme–prosequence interactions
Guido Kaulmann, Gottfried J. Palm, Klaus Schilling, Rolf Hilgenfeld, and Bernd Wiederanders
Protein Sci. 2006 November; 15(11): 2619–2629. doi: 10.1110/ps.062401806.
PMCID: PMC2242412
Crystal structures of the DNA-binding domain of Escherichia coli proline utilization A flavoprotein and analysis of the role of Lys9 in DNA recognition
John D. Larson, Jermaine L. Jenkins, Jonathan P. Schuermann, Yuzhen Zhou, Donald F. Becker, and John J. Tanner
Protein Sci. 2006 November; 15(11): 2630–2641. doi: 10.1110/ps.062425706.
PMCID: PMC2242416
Force field influences in β-hairpin folding simulations
Thu Zar Lwin and Ray Luo
Protein Sci. 2006 November; 15(11): 2642–2655. doi: 10.1110/ps.062438006.
PMCID: PMC2242415
Determination of the human type I interferon receptor binding site on human interferon-α2 by cross saturation and an NMR-based model of the complex
Sabine R. Quadt-Akabayov, Jordan H. Chill, Rina Levy, Naama Kessler, and Jacob Anglister
Protein Sci. 2006 November; 15(11): 2656–2668. doi: 10.1110/ps.062283006.
PMCID: PMC2242419
For the Record
Longin-like folds identified in CHiPS and DUF254 proteins: Vesicle trafficking complexes conserved in eukaryotic evolution
Lisa N. Kinch and Nick V. Grishin
Protein Sci. 2006 November; 15(11): 2669–2674. doi: 10.1110/ps.062419006.
PMCID: PMC2242422
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