| | This journal provides immediate access to some articles. On the Inside Plant Physiol. 2004 June; 135(2): 599–600. doi: 10.1104/pp.104.900110.PMCID: PMC514092 Editorial Weed Power, Translating Arabidopsis Bonnie Bartel and Robert L. Last PMCID: PMC514093 Perspectives on Translational Biology Positioning Arabidopsis in Plant Biology. A Key Step Toward Unification of Plant Research Michael Bevan and Sean Walsh PMCID: PMC514094 Chlamydomonas and Arabidopsis. A Dynamic Duo Benjamin L. Gutman and Krishna K. Niyogi PMCID: PMC514095 Beyond Arabidopsis. Translational Biology Meets Evolutionary Developmental Biology Vivian F. Irish and Philip N. Benfey PMCID: PMC514096 From Laboratory to Field. Using Information from Arabidopsis to Engineer Salt, Cold, and Drought Tolerance in Crops James Z. Zhang, Robert A. Creelman, and Jian-Kang Zhu PMCID: PMC514097 Arabidopsis to Rice. Applying Knowledge from a Weed to Enhance Our Understanding of a Crop Species W.A. Rensink and C. Robin Buell PMCID: PMC514098 TILLING. Traditional Mutagenesis Meets Functional Genomics Steven Henikoff, Bradley J. Till, and Luca Comai PMCID: PMC514099 Methods for Transcriptional Profiling in Plants. Be Fruitful and Replicate Blake C. Meyers, David W. Galbraith, Timothy Nelson, and Vikas Agrawal PMCID: PMC514100 Update on Ethylene Signaling Ethylene Signal Transduction. Moving beyond Arabidopsis Harry J. Klee PMCID: PMC514102 Update on Gibberellin Signaling Update on Gibberellin Signaling. A Tale of the Tall and the Short Stephen G. Thomas and Tai-ping Sun PMCID: PMC514103 Update on Lateral Organ Polarity Promoter Bashing, microRNAs, and Knox Genes. New Insights, Regulators, and Targets-of-Regulation in the Establishment of Lateral Organ Polarity in Arabidopsis Eric M. Engstrom, Anat Izhaki, and John L. Bowman PMCID: PMC514105 Update on Pathogen Recognition Guarding the Goods. New Insights into the Central Alarm System of Plants Roger W. Innes PMCID: PMC514106 Update on Photoperiod Response The Molecular Basis of Diversity in the Photoperiodic Flowering Responses of Arabidopsis and Rice Ryosuke Hayama and George Coupland PMCID: PMC514104 Update on Reactive Oxygen Species Activation of Ca2+ Channels Reactive Oxygen Species Activation of Plant Ca2+ Channels. A Signaling Mechanism in Polar Growth, Hormone Transduction, Stress Signaling, and Hypothetically Mechanotransduction Izumi C. Mori and Julian I. Schroeder PMCID: PMC514107 Update on Xylem Development A Weed for Wood? Arabidopsis as a Genetic Model for Xylem Development Kaisa M. Nieminen, Leila Kauppinen, and Ykä Helariutta PMCID: PMC514101 Bioinformatics Specification of the Peroxisome Targeting Signals Type 1 and Type 2 of Plant Peroxisomes by Bioinformatics Analyses Sigrun Reumann PMCID: PMC514115 Arabidopsis MPSS. An Online Resource for Quantitative Expression Analysis Blake C. Meyers, David K. Lee, Tam H. Vu, Shivakundan Singh Tej, Steve B. Edberg, Marta Matvienko, and Larry D. Tindell PMCID: PMC514116 Breakthrough Technologies Fluorescent Screening of Transgenic Arabidopsis Seeds without Germination Shu Wei, Ben-Ami Bravdo, and Oded Shoseyov PMCID: PMC514108 Genome Analysis Genome-Wide in Silico Mapping of Scaffold/Matrix Attachment Regions in Arabidopsis Suggests Correlation of Intragenic Scaffold/Matrix Attachment Regions with Gene Expression Stephen Rudd, Matthias Frisch, Korbinian Grote, Blake C. Meyers, Klaus Mayer, and Thomas Werner PMCID: PMC514109 Analysis of Curated and Predicted Plastid Subproteomes of Arabidopsis. Subcellular Compartmentalization Leads to Distinctive Proteome Properties Qi Sun, Olof Emanuelsson, and Klaas J. van Wijk PMCID: PMC514110 The Arabidopsis Genome Sequence as a Tool for Genome Analysis in Brassicaceae. A Comparison of the Arabidopsis and Capsella rubella Genomes Karine Boivin, Adile Acarkan, Rosa-Stella Mbulu, Oliver Clarenz, and Renate Schmidt PMCID: PMC514111 Functional Annotation of the Arabidopsis Genome Using Controlled Vocabularies Tanya Z. Berardini, Suparna Mundodi, Leonore Reiser, Eva Huala, Margarita Garcia-Hernandez, Peifen Zhang, Lukas A. Mueller, Jungwoon Yoon, Aisling Doyle, Gabriel Lander, Nick Moseyko, Danny Yoo, Iris Xu, Brandon Zoeckler, Mary Montoya, Neil Miller, Dan Weems, and Seung Y. Rhee PMCID: PMC514112 Comparative Genomics of Rice and Arabidopsis. Analysis of 727 Cytochrome P450 Genes and Pseudogenes from a Monocot and a Dicot David R. Nelson, Mary A. Schuler, Suzanne M. Paquette, Daniele Werck-Reichhart, and Søren Bak PMCID: PMC514113 Genome-Wide ORFeome Cloning and Analysis of Arabidopsis Transcription Factor Genes Wei Gong, Yun-Ping Shen, Li-Geng Ma, Yi Pan, Yun-Long Du, Dong-Hui Wang, Jian-Yu Yang, Li-De Hu, Xin-Fang Liu, Chun-Xia Dong, Li Ma, Yan-Hui Chen, Xiao-Yuan Yang, Ying Gao, Danmeng Zhu, Xiaoli Tan, Jin-Ye Mu, Da-Bing Zhang, Yu-Le Liu, S.P. Dinesh-Kumar, Yi Li, Xi-Ping Wang, Hong-Ya Gu, Li-Jia Qu, Shu-Nong Bai, Ying-Tang Lu, Jia-Yang Li, Jin-Dong Zhao, Jianru Zuo, Hai Huang, Xing Wang Deng, and Yu-Xian Zhu PMCID: PMC514114 Research Articles Biochemical Processes and Macromolecular Structures The Peroxisome Deficient Arabidopsis Mutant sse1 Exhibits Impaired Fatty Acid Synthesis Yun Lin, Joanne E. Cluette-Brown, and Howard M. Goodman PMCID: PMC514117 Glucosinolate and Amino Acid Biosynthesis in Arabidopsis Ben Field, Guillermo Cardon, Maria Traka, Johan Botterman, Guy Vancanneyt, and Richard Mithen PMCID: PMC514118 Functional Analysis of the Tandem-Duplicated P450 Genes SPS/BUS/CYP79F1 and CYP79F2 in Glucosinolate Biosynthesis and Plant Development by Ds Transposition-Generated Double Mutants Titima Tantikanjana, Michael Dalgaard Mikkelsen, Mumtaz Hussain, Barbara Ann Halkier, and Venkatesan Sundaresan PMCID: PMC514119 Plastidial α-Glucan Phosphorylase Is Not Required for Starch Degradation in Arabidopsis Leaves But Has a Role in the Tolerance of Abiotic Stress Samuel C. Zeeman, David Thorneycroft, Nicole Schupp, Andrew Chapple, Melanie Weck, Hannah Dunstan, Pierre Haldimann, Nicole Bechtold, Alison M. Smith, and Steven M. Smith PMCID: PMC514120 Expression of the Isochrysis C18-Δ9 Polyunsaturated Fatty Acid Specific Elongase Component Alters Arabidopsis Glycerolipid Profiles Thomas Colin Michael Fraser, Baoxiu Qi, Salah Elhussein, Sunantha Chatrattanakunchai, Allan Keith Stobart, and Colin Michael Lazarus PMCID: PMC514121 Purification and Characterization of Enzymes Exhibiting β-d-Xylosidase Activities in Stem Tissues of Arabidopsis Zoran Minic, Christophe Rihouey, Cao Trung Do, Patrice Lerouge, and Lise Jouanin PMCID: PMC514122 Trehalose Mediated Growth Inhibition of Arabidopsis Seedlings Is Due to Trehalose-6-Phosphate Accumulation Henriette Schluepmann, Anja van Dijken, Mahnaz Aghdasi, Barry Wobbes, Matthew Paul, and Sjef Smeekens PMCID: PMC514123 Bioenergetics and Photosynthesis A Mutant of Arabidopsis Lacking the Triose-Phosphate/Phosphate Translocator Reveals Metabolic Regulation of Starch Breakdown in the Light Robin G. Walters, Douglas G. Ibrahim, Peter Horton, and Nicholas J. Kruger PMCID: PMC514124 Cell Biology and Signal Transduction GCR1 Can Act Independently of Heterotrimeric G-Protein in Response to Brassinosteroids and Gibberellins in Arabidopsis Seed Germination Jin-Gui Chen, Sona Pandey, Jirong Huang, José M. Alonso, Joseph R. Ecker, Sarah M. Assmann, and Alan M. Jones PMCID: PMC514125 Intracellular Localization of Arabidopsis Sulfurtransferases Michael Bauer, Christof Dietrich, Katharina Nowak, Walter D. Sierralta, and Jutta Papenbrock PMCID: PMC514126 Type-B Response Regulators Display Overlapping Expression Patterns in Arabidopsis Michael G. Mason, Jie Li, Dennis E. Mathews, Joseph J. Kieber, and G. Eric Schaller PMCID: PMC514127 Molecular Characterization of an Arabidopsis Gene Encoding a Phospholipid-Specific Inositol Polyphosphate 5-Phosphatase Mustafa E. Ercetin and Glenda E. Gillaspy PMCID: PMC514128 Characterization of an Ultraviolet B-Induced Lipase in Arabidopsis Maisie Lo, Catherine Taylor, Li Wang, Linda Nowack, Tzann-Wei Wang, and John Thompson PMCID: PMC514129 Development and Hormone Action Interaction between Wall Deposition and Cell Elongation in Dark-Grown Hypocotyl Cells in Arabidopsis Guislaine Refrégier, Sandra Pelletier, Danielle Jaillard, and Herman Höfte PMCID: PMC514130 Arabidopsis Trehalose-6-Phosphate Synthase 1 Is Essential for Normal Vegetative Growth and Transition to Flowering Anja J.H. van Dijken, Henriette Schluepmann, and Sjef C.M. Smeekens PMCID: PMC514131 A Family of Auxin-Conjugate Hydrolases That Contributes to Free Indole-3-Acetic Acid Levels during Arabidopsis Germination Rebekah A. Rampey, Sherry LeClere, Mariusz Kowalczyk, Karin Ljung, Göran Sandberg, and Bonnie Bartel PMCID: PMC514132 IAR4, a Gene Required for Auxin Conjugate Sensitivity in Arabidopsis, Encodes a Pyruvate Dehydrogenase E1α Homolog Sherry LeClere, Rebekah A. Rampey, and Bonnie Bartel PMCID: PMC514133 16,17-Dihydro Gibberellin A5 Competitively Inhibits a Recombinant Arabidopsis GA 3β-Hydroxylase Encoded by the GA4 Gene Rong Zhou, Min Yu, and Richard P. Pharis PMCID: PMC514134 DELLA Proteins and Gibberellin-Regulated Seed Germination and Floral Development in Arabidopsis Ludmila Tyler, Stephen G. Thomas, Jianhong Hu, Alyssa Dill, Jose M. Alonso, Joseph R. Ecker, and Tai-ping Sun PMCID: PMC514135 AtCAND1, A HEAT-Repeat Protein That Participates in Auxin Signaling in Arabidopsis Youfa Cheng, Xinhua Dai, and Yunde Zhao PMCID: PMC514136 Environmental Stress and Adaptation A Novel Family of Cys-Rich Membrane Proteins Mediates Cadmium Resistance in Arabidopsis Won-Yong Song, Enrico Martinoia, Joohyun Lee, Dongwoo Kim, Do-Young Kim, Esther Vogt, Donghwan Shim, Kwan Sam Choi, Inhwan Hwang, and Youngsook Lee PMCID: PMC514137 Salicylate Accumulation Inhibits Growth at Chilling Temperature in Arabidopsis Ian M. Scott, Shannon M. Clarke, Jacqueline E. Wood, and Luis A.J. Mur PMCID: PMC514138 Cell Cycle Modulation in the Response of the Primary Root of Arabidopsis to Salt Stress Gerrit West, Dirk Inzé, and Gerrit T.S. Beemster PMCID: PMC514139 Genetics, Genomics, and Molecular Evolution Homology Modeling of Representative Subfamilies of Arabidopsis Major Intrinsic Proteins. Classification Based on the Aromatic/Arginine Selectivity Filter Ian S. Wallace and Daniel M. Roberts PMCID: PMC514140 Plant Body Weight-Induced Secondary Growth in Arabidopsis and Its Transcription Phenotype Revealed by Whole-Transcriptome Profiling Jae-Heung Ko, Kyung-Hwan Han, Sunchung Park, and Jaemo Yang PMCID: PMC514141 Genome-Wide Analysis of the Cyclin Family in Arabidopsis and Comparative Phylogenetic Analysis of Plant Cyclin-Like Proteins Guanfang Wang, Hongzhi Kong, Yujin Sun, Xiaohong Zhang, Wei Zhang, Naomi Altman, Claude W. dePamphilis, and Hong Ma PMCID: PMC514142 Plants Interacting with Other Organisms Arabidopsis Downy Mildew Resistance Gene RPP27 Encodes a Receptor-Like Protein Similar to CLAVATA2 and Tomato Cf-9 Mahmut Tör, Duncan Brown, Abigail Cooper, Alison Woods-Tör, Kimmen Sjölander, Jonathan D.G. Jones, and Eric B. Holub PMCID: PMC514143 The Transcriptional Innate Immune Response to flg22. Interplay and Overlap with Avr Gene-Dependent Defense Responses and Bacterial Pathogenesis Lionel Navarro, Cyril Zipfel, Owen Rowland, Ingo Keller, Silke Robatzek, Thomas Boller, and Jonathan D.G. Jones PMCID: PMC514144 Gene Expression Signatures from Three Genetically Separable Resistance Gene Signaling Pathways for Downy Mildew Resistance Thomas Eulgem, Victor J. Weigman, Hur-Song Chang, John M. McDowell, Eric B. Holub, Jane Glazebrook, Tong Zhu, and Jeffery L. Dangl PMCID: PMC514145 Corrections Plant Physiol. 2004 June; 135(2): 1145. doi: 10.1104/pp.900111.PMCID: PMC514146 Corrects: Tsai-Hung Hsieh, et al. Heterology Expression of the Arabidopsis C-Repeat/Dehydration Response Element Binding Factor 1 Gene Confers Elevated Tolerance to Chilling and Oxidative Stresses in Transgenic Tomato. Plant Physiol. 2002 July; 129(3): 1086–1094. Plant Physiol. 2004 June; 135(2): 1146. doi: 10.1104/pp.900112.PMCID: PMC514147 Corrects: Gabriela Carolina Pagnussat, et al. Nitric Oxide Mediates the Indole Acetic Acid Induction Activation of a Mitogen-Activated Protein Kinase Cascade Involved in Adventitious Root Development. Plant Physiol. 2004 May; 135(1): 279–286. |
