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Volume 140(3);  March 2006
On the Inside
On the Inside
Peter V. Minorsky
Plant Physiol. 2006 March; 140(3): 791–792. doi: 10.1104/pp.104.900186.
PMCID: PMC1400582
Bioinformatics
TOPAAS, a Tomato and Potato Assembly Assistance System for Selection and Finishing of Bacterial Artificial Chromosomes
Sander A. Peters, Jan C. van Haarst, Taco P. Jesse, Dennis Woltinge, Kim Jansen, Thamara Hesselink, Marjo J. van Staveren, Marleen H.C. Abma-Henkens, and René M. Klein-Lankhorst
Plant Physiol. 2006 March; 140(3): 805–817. doi: 10.1104/pp.105.071464.
PMCID: PMC1400557
AGRIS and AtRegNet. A Platform to Link cis-Regulatory Elements and Transcription Factors into Regulatory Networks
Saranyan K. Palaniswamy, Stephen James, Hao Sun, Rebecca S. Lamb, Ramana V. Davuluri, and Erich Grotewold
Plant Physiol. 2006 March; 140(3): 818–829. doi: 10.1104/pp.105.072280.
PMCID: PMC1400579
Genome Analysis
Abundantly and Rarely Expressed Lhc Protein Genes Exhibit Distinct Regulation Patterns in Plants
Frank Klimmek, Andreas Sjödin, Christos Noutsos, Dario Leister, and Stefan Jansson
Plant Physiol. 2006 March; 140(3): 793–804. doi: 10.1104/pp.105.073304.
PMCID: PMC1400566
Research Articles
Biochemical Processes and Macromolecular Structures
An Arabidopsis Mutant Impaired in Coenzyme A Biosynthesis Is Sugar Dependent for Seedling Establishment
Silvia Rubio, Tony R. Larson, Miguel Gonzalez-Guzman, Santiago Alejandro, Ian A. Graham, Ramón Serrano, and Pedro L. Rodriguez
Plant Physiol. 2006 March; 140(3): 830–843. doi: 10.1104/pp.105.072066.
PMCID: PMC1400581
Cinnamate Metabolism in Ripening Fruit. Characterization of a UDP-Glucose:Cinnamate Glucosyltransferase from Strawberry
Stefan Lunkenbein, MariLuz Bellido, Asaph Aharoni, Elma M.J. Salentijn, Ralf Kaldenhoff, Heather A. Coiner, Juan Muñoz-Blanco, and Wilfried Schwab
Plant Physiol. 2006 March; 140(3): 1047–1058. doi: 10.1104/pp.105.074955.
PMCID: PMC1400576
Interaction between Arabidopsis Brca2 and Its Partners Rad51, Dmc1, and Dss1
Eloïse Dray, Nicolas Siaud, Emeline Dubois, and Marie-Pascale Doutriaux
Plant Physiol. 2006 March; 140(3): 1059–1069. doi: 10.1104/pp.105.075838.
PMCID: PMC1400560
Function and Characterization of Starch Synthase I Using Mutants in Rice
Naoko Fujita, Mayumi Yoshida, Noriko Asakura, Takashi Ohdan, Akio Miyao, Hirohiko Hirochika, and Yasunori Nakamura
Plant Physiol. 2006 March; 140(3): 1070–1084. doi: 10.1104/pp.105.071845.
PMCID: PMC1400558
Cell Biology and Signal Transduction
G-Protein-Coupled Receptor 1, G-Protein Gα-Subunit 1, and Prephenate Dehydratase 1 Are Required for Blue Light-Induced Production of Phenylalanine in Etiolated Arabidopsis
Katherine Mary Warpeha, Syed Salman Lateef, Yevgeniya Lapik, Marybeth Anderson, Bao-Shiang Lee, and Lon Seth Kaufman
Plant Physiol. 2006 March; 140(3): 844–855. doi: 10.1104/pp.105.071282.
PMCID: PMC1400578
Multiple Heme Oxygenase Family Members Contribute to the Biosynthesis of the Phytochrome Chromophore in Arabidopsis
Thomas J. Emborg, Joseph M. Walker, Bosl Noh, and Richard D. Vierstra
Plant Physiol. 2006 March; 140(3): 856–868. doi: 10.1104/pp.105.074211.
PMCID: PMC1400562
Identification and Characterization of the Arabidopsis Orthologs of Nuclear Transport Factor 2, the Nuclear Import Factor of Ran
Qiao Zhao, Sara Leung, Anita H. Corbett, and Iris Meier
Plant Physiol. 2006 March; 140(3): 869–878. doi: 10.1104/pp.105.075499.
PMCID: PMC1400580
Posttranslational Regulation of Nitrate Reductase Strongly Affects the Levels of Free Amino Acids and Nitrate, whereas Transcriptional Regulation Has Only Minor Influence
Unni S. Lea, Marie-Thérèse Leydecker, Isabelle Quilleré, Christian Meyer, and Cathrine Lillo
Plant Physiol. 2006 March; 140(3): 1085–1094. doi: 10.1104/pp.105.074633.
PMCID: PMC1400556
Development and Hormone Action
Characterization of low phosphorus insensitive Mutants Reveals a Crosstalk between Low Phosphorus-Induced Determinate Root Development and the Activation of Genes Involved in the Adaptation of Arabidopsis to Phosphorus Deficiency
Lenin Sánchez-Calderón, José López-Bucio, Alejandra Chacón-López, Abel Gutiérrez-Ortega, Esmeralda Hernández-Abreu, and Luis Herrera-Estrella
Plant Physiol. 2006 March; 140(3): 879–889. doi: 10.1104/pp.105.073825.
PMCID: PMC1400555
Control of Floral Meristem Determinacy in Petunia by MADS-Box Transcription Factors
Silvia Ferrario, Anna V. Shchennikova, John Franken, Richard G.H. Immink, and Gerco C. Angenent
Plant Physiol. 2006 March; 140(3): 890–898. doi: 10.1104/pp.105.072660.
PMCID: PMC1400554
A Role for Auxin Response Factor 19 in Auxin and Ethylene Signaling in Arabidopsis
Jisheng Li, Xinhua Dai, and Yunde Zhao
Plant Physiol. 2006 March; 140(3): 899–908. doi: 10.1104/pp.105.070987.
PMCID: PMC1400570
The Arabidopsis Zinc Finger-Homeodomain Genes Encode Proteins with Unique Biochemical Properties That Are Coordinately Expressed during Floral Development
Queenie K.-G. Tan and Vivian F. Irish
Plant Physiol. 2006 March; 140(3): 1095–1108. doi: 10.1104/pp.105.070565.
PMCID: PMC1400567
Phytochrome B Represses Teosinte Branched1 Expression and Induces Sorghum Axillary Bud Outgrowth in Response to Light Signals
Tesfamichael H. Kebrom, Byron L. Burson, and Scott A. Finlayson
Plant Physiol. 2006 March; 140(3): 1109–1117. doi: 10.1104/pp.105.074856.
PMCID: PMC1400571
A Role for Mitochondria in the Establishment and Maintenance of the Maize Root Quiescent Center
Keni Jiang, Tracy Ballinger, Daisy Li, Shibo Zhang, and Lewis Feldman
Plant Physiol. 2006 March; 140(3): 1118–1125. doi: 10.1104/pp.105.071977.
PMCID: PMC1400572
Environmental Stress and Adaptation to Stress
A Central Role for the Nitrate Transporter NRT2.1 in the Integrated Morphological and Physiological Responses of the Root System to Nitrogen Limitation in Arabidopsis
Tony Remans, Philippe Nacry, Marjorie Pervent, Thomas Girin, Pascal Tillard, Marc Lepetit, and Alain Gojon
Plant Physiol. 2006 March; 140(3): 909–921. doi: 10.1104/pp.105.075721.
PMCID: PMC1400583
AtATM3 Is Involved in Heavy Metal Resistance in Arabidopsis
Do-Young Kim, Lucien Bovet, Sergei Kushnir, Eun Woon Noh, Enrico Martinoia, and Youngsook Lee
Plant Physiol. 2006 March; 140(3): 922–932. doi: 10.1104/pp.105.074146.
PMCID: PMC1400565
Genetics, Genomics, and Molecular Evolution
Forward Genetic Analysis of the Circadian Clock Separates the Multiple Functions of ZEITLUPE
Éva Kevei, Péter Gyula, Anthony Hall, László Kozma-Bognár, Woe-Yeon Kim, Maria E. Eriksson, Réka Tóth, Shigeru Hanano, Balázs Fehér, Megan M. Southern, Ruth M. Bastow, András Viczián, Victoria Hibberd, Seth J. Davis, David E. Somers, Ferenc Nagy, and Andrew J. Millar
Plant Physiol. 2006 March; 140(3): 933–945. doi: 10.1104/pp.105.074864.
PMCID: PMC1400575
Poplar Carbohydrate-Active Enzymes. Gene Identification and Expression Analyses
Jane Geisler-Lee, Matt Geisler, Pedro M. Coutinho, Bo Segerman, Nobuyuki Nishikubo, Junko Takahashi, Henrik Aspeborg, Soraya Djerbi, Emma Master, Sara Andersson-Gunnerås, Björn Sundberg, Stanislaw Karpinski, Tuula T. Teeri, Leszek A. Kleczkowski, Bernard Henrissat, and Ewa J. Mellerowicz
Plant Physiol. 2006 March; 140(3): 946–962. doi: 10.1104/pp.105.072652.
PMCID: PMC1400564
A Segment of the Apospory-Specific Genomic Region Is Highly Microsyntenic Not Only between the Apomicts Pennisetum squamulatum and Buffelgrass, But Also with a Rice Chromosome 11 Centromeric-Proximal Genomic Region
Gustavo Gualtieri, Joann A. Conner, Daryl T. Morishige, L. David Moore, John E. Mullet, and Peggy Ozias-Akins
Plant Physiol. 2006 March; 140(3): 963–971. doi: 10.1104/pp.105.073809.
PMCID: PMC1400559
GOLD HULL AND INTERNODE2 Encodes a Primarily Multifunctional Cinnamyl-Alcohol Dehydrogenase in Rice
Kewei Zhang, Qian Qian, Zejun Huang, Yiqin Wang, Ming Li, Lilan Hong, Dali Zeng, Minghong Gu, Chengcai Chu, and Zhukuan Cheng
Plant Physiol. 2006 March; 140(3): 972–983. doi: 10.1104/pp.105.073007.
PMCID: PMC1400561
Protein Profiling of Plastoglobules in Chloroplasts and Chromoplasts. A Surprising Site for Differential Accumulation of Metabolic Enzymes
A. Jimmy Ytterberg, Jean-Benoit Peltier, and Klaas J. van Wijk
Plant Physiol. 2006 March; 140(3): 984–997. doi: 10.1104/pp.105.076083.
PMCID: PMC1400577
Point Mutations with Positive Selection Were a Major Force during the Evolution of a Receptor-Kinase Resistance Gene Family of Rice
Xinli Sun, Yinglong Cao, and Shiping Wang
Plant Physiol. 2006 March; 140(3): 998–1008. doi: 10.1104/pp.105.073080.
PMCID: PMC1400573
Plants Interacting with Other Organisms
Wound-Induced Terpene Synthase Gene Expression in Sitka Spruce That Exhibit Resistance or Susceptibility to Attack by the White Pine Weevil
Ashley Byun-McKay, Kimberley-Ann Godard, Morteza Toudefallah, Diane M. Martin, Rene Alfaro, John King, Joerg Bohlmann, and Aine L. Plant
Plant Physiol. 2006 March; 140(3): 1009–1021. doi: 10.1104/pp.105.071803.
PMCID: PMC1400563
Effects of Feeding Spodoptera littoralis on Lima Bean Leaves. III. Membrane Depolarization and Involvement of Hydrogen Peroxide
Massimo E. Maffei, Axel Mithöfer, Gen-Ichiro Arimura, Hannes Uchtenhagen, Simone Bossi, Cinzia M. Bertea, Laura Starvaggi Cucuzza, Mara Novero, Veronica Volpe, Stefano Quadro, and Wilhelm Boland
Plant Physiol. 2006 March; 140(3): 1022–1035. doi: 10.1104/pp.105.071993.
PMCID: PMC1400574
Silencing of a Germin-Like Gene in Nicotiana attenuata Improves Performance of Native Herbivores
Yonggen Lou and Ian T. Baldwin
Plant Physiol. 2006 March; 140(3): 1126–1136. doi: 10.1104/pp.105.073700.
PMCID: PMC1400569
Systems Biology, Molecular Biology, and Gene Regulation
High-Affinity Nitrate Transport in Roots of Arabidopsis Depends on Expression of the NAR2-Like Gene AtNRT3.1
Mamoru Okamoto, Anshuman Kumar, Wenbin Li, Ye Wang, M. Yaeesh Siddiqi, Nigel M. Crawford, and Anthony D.M. Glass
Plant Physiol. 2006 March; 140(3): 1036–1046. doi: 10.1104/pp.105.074385.
PMCID: PMC1400568
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