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Volume 14(2);  February 2008
Mini-Review
Global analysis of mRNA splicing
Michael J. Moore and Pamela A. Silver
RNA. 2008 February; 14(2): 197–203. doi: 10.1261/rna.868008.
PMCID: PMC2212243
Letters to the Editor
Mammalian 2′,3′ cyclic nucleotide phosphodiesterase (CNP) can function as a tRNA splicing enzyme in vivo
Beate Schwer, Anna Aronova, Alejandro Ramirez, Peter Braun, and Stewart Shuman
RNA. 2008 February; 14(2): 204–210. doi: 10.1261/rna.858108.
PMCID: PMC2212240
A-to-I editing sites are a genomically encoded G: Implications for the evolutionary significance and identification of novel editing sites
Nan Tian, Xiaojie Wu, Yaozhou Zhang, and Yongfeng Jin
RNA. 2008 February; 14(2): 211–216. doi: 10.1261/rna.797108.
PMCID: PMC2212257
Reports
Faithful editing of a tomato-specific mRNA editing site in transgenic tobacco chloroplasts
Daniel Karcher, Sabine Kahlau, and Ralph Bock
RNA. 2008 February; 14(2): 217–224. doi: 10.1261/rna.823508.
PMCID: PMC2212248
An intact unfolded protein response in Trpt1 knockout mice reveals phylogenic divergence in pathways for RNA ligation
Heather P. Harding, Jeremy G. Lackey, Hao-Chi Hsu, Yuhong Zhang, Jing Deng, Rui-Ming Xu, Masad J. Damha, and David Ron
RNA. 2008 February; 14(2): 225–232. doi: 10.1261/rna.859908.
PMCID: PMC2212252
The bacterial toxin RelE induces specific mRNA cleavage in the A site of the eukaryote ribosome
Dmitri Andreev, Vasili Hauryliuk, Ilya Terenin, Sergey Dmitriev, Måns Ehrenberg, and Ivan Shatsky
RNA. 2008 February; 14(2): 233–239. doi: 10.1261/rna.693208.
PMCID: PMC2212246
Proteasomal degradation of human release factor eRF3a regulates translation termination complex formation
Céline Chauvin and Olivier Jean-Jean
RNA. 2008 February; 14(2): 240–245. doi: 10.1261/rna.728608.
PMCID: PMC2212242
Articles
Puf1p acts in combination with other yeast Puf proteins to control mRNA stability
Randi J. Ulbricht and Wendy M. Olivas
RNA. 2008 February; 14(2): 246–262. doi: 10.1261/rna.847408.
PMCID: PMC2212245
Strand-specific 5′-O-methylation of siRNA duplexes controls guide strand selection and targeting specificity
Po Yu Chen, Lasse Weinmann, Dimos Gaidatzis, Yi Pei, Mihaela Zavolan, Thomas Tuschl, and Gunter Meister
RNA. 2008 February; 14(2): 263–274. doi: 10.1261/rna.789808.
PMCID: PMC2212253
Yeast as a model of human mitochondrial tRNA base substitutions: Investigation of the molecular basis of respiratory defects
Arianna Montanari, Céline Besagni, Cristina De Luca, Veronica Morea, Romina Oliva, Anna Tramontano, Monique Bolotin-Fukuhara, Laura Frontali, and Silvia Francisci
RNA. 2008 February; 14(2): 275–283. doi: 10.1261/rna.740108.
PMCID: PMC2212258
Diverse roles of hnRNP L in mammalian mRNA processing: A combined microarray and RNAi analysis
Lee-Hsueh Hung, Monika Heiner, Jingyi Hui, Silke Schreiner, Vladimir Benes, and Albrecht Bindereif
RNA. 2008 February; 14(2): 284–296. doi: 10.1261/rna.725208.
PMCID: PMC2212255
Analysis of the human polynucleotide phosphorylase (PNPase) reveals differences in RNA binding and response to phosphate compared to its bacterial and chloroplast counterparts
Victoria Portnoy, Gili Palnizky, Shlomit Yehudai-Resheff, Fabian Glaser, and Gadi Schuster
RNA. 2008 February; 14(2): 297–309. doi: 10.1261/rna.698108.
PMCID: PMC2212259
Stable PNPase RNAi silencing: Its effect on the processing and adenylation of human mitochondrial RNA
Shimyn Slomovic and Gadi Schuster
RNA. 2008 February; 14(2): 310–323. doi: 10.1261/rna.697308.
PMCID: PMC2212247
A genome-wide approach identifies distinct but overlapping subsets of cellular mRNAs associated with Staufen1- and Staufen2-containing ribonucleoprotein complexes
Luc Furic, Marjolaine Maher-Laporte, and Luc DesGroseillers
RNA. 2008 February; 14(2): 324–335. doi: 10.1261/rna.720308.
PMCID: PMC2212254
miR-122 targeting with LNA/2′-O-methyl oligonucleotide mixmers, peptide nucleic acids (PNA), and PNA–peptide conjugates
Martin M. Fabani and Michael J. Gait
RNA. 2008 February; 14(2): 336–346. doi: 10.1261/rna.844108.
PMCID: PMC2212241
KREPA6 is an RNA-binding protein essential for editosome integrity and survival of Trypanosoma brucei
Salvador Zipagan Tarun, Jr, Achim Schnaufer, Nancy Lewis Ernst, Rosemary Proff, Junpeng Deng, Wim Hol, and Kenneth Stuart
RNA. 2008 February; 14(2): 347–358. doi: 10.1261/rna.763308.
PMCID: PMC2212256
Modulating alternative splicing by cotranscriptional cleavage of nascent intronic RNA
Natalia Gromak, Gabriele Talotti, Nicholas J. Proudfoot, and Franco Pagani
RNA. 2008 February; 14(2): 359–366. doi: 10.1261/rna.615508.
PMCID: PMC2212250
Factor requirements for translation initiation on the Simian picornavirus internal ribosomal entry site
Sylvain de Breyne, Yingpu Yu, Tatyana V. Pestova, and Christopher U.T. Hellen
RNA. 2008 February; 14(2): 367–380. doi: 10.1261/rna.696508.
PMCID: PMC2212249
The E. coli RhlE RNA helicase regulates the function of related RNA helicases during ribosome assembly
Chaitanya Jain
RNA. 2008 February; 14(2): 381–389. doi: 10.1261/rna.800308.
PMCID: PMC2212244
Method
A simple ligation-based method to increase the information density in sequencing reactions used to deconvolute nucleic acid selections
Jessica L. Childs-Disney and Matthew D. Disney
RNA. 2008 February; 14(2): 390–394. doi: 10.1261/rna.576908.
PMCID: PMC2212251
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