| | This journal provides immediate access to some articles. Perspective p53–RNA interactions: New clues in an old mystery Kasandra J.-L. Riley and L. James Maher, III PMCID: PMC2040099 Review RNA-specific ribonucleotidyl transferases Georges Martin and Walter Keller PMCID: PMC2040100 Bioinformatics Semiautomated improvement of RNA alignments Ebbe S. Andersen, Allan Lind-Thomsen, Bjarne Knudsen, Susie E. Kristensen, Jakob H. Havgaard, Elfar Torarinsson, Niels Larsen, Christian Zwieb, Peter Sestoft, Jørgen Kjems, and Jan Gorodkin PMCID: PMC2040093 Reports Dynactin suppresses the retrograde movement of apically localized mRNA in Drosophila blastoderm embryos Georgia Vendra, Russell S. Hamilton, and Ilan Davis PMCID: PMC2040102 RluD, a highly conserved pseudouridine synthase, modifies 50S subunits more specifically and efficiently than free 23S rRNA Pavanapuresan P. Vaidyanathan, Murray P. Deutscher, and Arun Malhotra PMCID: PMC2040082 First experimental evidence for the preferential stabilization of the natural D- over the nonnatural L-configuration in nucleic acids Sarah Bolik, Michael Rübhausen, Stephan Binder, Benjamin Schulz, Markus Perbandt, Nicolay Genov, Volker Erdmann, Sven Klussmann, and Christian Betzel PMCID: PMC2040083 Phenylalanyl-tRNA synthetase editing defects result in efficient mistranslation of phenylalanine codons as tyrosine Jiqiang Ling, Srujana S. Yadavalli, and Michael Ibba PMCID: PMC2040089 Chemical modification resolves the asymmetry of siRNA strand degradation in human blood serum John A.H. Hoerter and Nils G. Walter PMCID: PMC2040087 Articles Determinants of targeting by endogenous and exogenous microRNAs and siRNAs Cydney B. Nielsen, Noam Shomron, Rickard Sandberg, Eran Hornstein, Jacob Kitzman, and Christopher B Burge PMCID: PMC2040081 Gene silencing mechanisms mediated by Aubergine–piRNA complexes in Drosophila male gonad Kazumichi M. Nishida, Kuniaki Saito, Tomoko Mori, Yoshinori Kawamura, Tomoko Nagami-Okada, Sachi Inagaki, Haruhiko Siomi, and Mikiko C. Siomi PMCID: PMC2040086 Structural RNAs of known and unknown function identified in malaria parasites by comparative genomics and RNA analysis Kausik Chakrabarti, Michael Pearson, Leslie Grate, Timothy Sterne-Weiler, Jonathan Deans, John Paul Donohue, and Manuel Ares, Jr PMCID: PMC2040097 Saturation mutagenesis of a +1 programmed frameshift-inducing mRNA sequence derived from a yeast retrotransposon Carla Guarraia, Laura Norris, Ana Raman, and Philip J. Farabaugh PMCID: PMC2040094 The three-dimensional structure of the Moorella thermoacetica selenocysteine insertion sequence RNA hairpin and its interaction with the elongation factor SelB Alexander V. Beribisky, Tony J. Tavares, Andrew N. Amborski, Mina Motamed, Anne E. Johnson, Tobi L. Mark, and Philip E. Johnson PMCID: PMC2040101 Exoribonuclease R in Mycoplasma genitalium can carry out both RNA processing and degradative functions and is sensitive to RNA ribose methylation Maureen S. Lalonde, Yuhong Zuo, Jianwei Zhang, Xin Gong, Shaohui Wu, Arun Malhotra, and Zhongwei Li PMCID: PMC2040080 Substrate specificity and properties of the Escherichia coli 16S rRNA methyltransferase, RsmE Georgeta N. Basturea and Murray P. Deutscher PMCID: PMC2040091 Yeast Rrp14p is a nucleolar protein involved in both ribosome biogenesis and cell polarity Hiroko Yamada, Chihiro Horigome, Takafumi Okada, Chiharu Shirai, and Keiko Mizuta PMCID: PMC2040088 Regulation of transcription of the RNA splicing factor hSlu7 by Elk-1 and Sp1 affects alternative splicing Moti Alberstein, Maayan Amit, Keren Vaknin, Amanda O'Donnell, Chen Farhy, Yaniv Lerenthal, Noam Shomron, Ohad Shaham, Andrew D. Sharrocks, Ruth Ashery-Padan, and Gil Ast PMCID: PMC2040095 Conformational energy and structure in canonical and noncanonical forms of tRNA determined by temperature analysis of the rate of s4U8–C13 photocrosslinking Wayne Huggins, Tatjana Shapkina, and Paul Wollenzien PMCID: PMC2040084 Nucleotide synthetase ribozymes may have emerged first in the RNA world Wentao Ma, Chunwu Yu, Wentao Zhang, and Jiming Hu PMCID: PMC2040096 TRAP-5′ stem–loop interaction increases the efficiency of transcription termination in the Bacillus subtilis trpEDCFBA operon leader region Adam P. McGraw, Philip C. Bevilacqua, and Paul Babitzke PMCID: PMC2040092 Method Selective quenching of fluorescence from unbound oligonucleotides by gold nanoparticles as a probe of RNA structure Huixiang Li, Ruiting Liang, Douglas H. Turner, Lewis J. Rothberg, and Shenghua Duan PMCID: PMC2040090 Substitution of the use of radioactivity by fluorescence for biochemical studies of RNA Bei-Wen Ying, Dominique Fourmy, and Satoko Yoshizawa PMCID: PMC2040085 Erratum Genetic analysis of the E site during RF2 programmed frameshifting Christina L. Sanders and James F. Curran PMCID: PMC2040098 Corrects: Christina L. Sanders, et al. Genetic analysis of the E site during RF2 programmed frameshifting. RNA. 2007 September; 13(9): 1483–1491. |
