| | This journal provides immediate access to some articles. Review Statistical and Bayesian approaches to RNA secondary structure prediction YE DING PMCID: PMC1383571 Letters to the Editor Evolutionary specialization of recoding: Frameshifting in the expression of S. cerevisiae antizyme mRNA is via an atypical antizyme shift site but is still +1 IVAYLO P. IVANOV, RAYMOND F. GESTELAND, and JOHN F. ATKINS PMCID: PMC1383572 Potential for alternative intron–exon pairings in group II intron RmInt1 from Sinorhizobium meliloti and its relatives MARÍA COSTA, FRANÇOIS MICHEL, and NICOLÁS TORO PMCID: PMC1383573 Bioinformatics RNA secondary structure prediction from sequence alignments using a network of k-nearest neighbor classifiers ECKART BINDEWALD and BRUCE A. SHAPIRO PMCID: PMC1383574 Report Frequency of RNA–RNA interaction in a model of the RNA World JOHN C. STRIGGLES, MATTHEW B. MARTIN, and FRANCIS J. SCHMIDT PMCID: PMC1383575 Articles Mutational analysis of human eIF4AIII identifies regions necessary for exon junction complex formation and nonsense-mediated mRNA decay TOSHIHARU SHIBUYA, THOMAS Ø. TANGE, M. ELIZABETH STROUPE, and MELISSA J. MOORE PMCID: PMC1383576 Dissection of Prp8 protein defines multiple interactions with crucial RNA sequences in the catalytic core of the spliceosome IAN A. TURNER, CHRISTINE M. NORMAN, MARK J. CHURCHER, and ANDREW J. NEWMAN PMCID: PMC1383577 Comparison of crystal structure interactions and thermodynamics for stabilizing mutations in the Tetrahymena ribozyme FENG GUO, ANNE R. GOODING, and THOMAS R. CECH PMCID: PMC1383578 U7 snRNA mutations in Drosophila block histone pre-mRNA processing and disrupt oogenesis ASHLEY C. GODFREY, JEREMY M. KUPSCO, BRANDON D. BURCH, RYAN M. ZIMMERMAN, ZBIGNIEW DOMINSKI, WILLIAM F. MARZLUFF, and ROBERT J. DURONIO PMCID: PMC1383579 Biochemical and NMR analyses of an SF3b155–p14–U2AF-RNA interaction network involved in branch point definition during pre-mRNA splicing ROBERTA SPADACCINI, ULRICH REIDT, OLEXANDR DYBKOV, CINDY WILL, RONALD FRANK, GUNTER STIER, LORENZO CORSINI, MARKUS C. WAHL, REINHARD LÜHRMANN, and MICHAEL SATTLER PMCID: PMC1383580 Identification and characterization of RsmE, the founding member of a new RNA base methyltransferase family GEORGETA N. BASTUREA, KENNETH E. RUDD, and MURRAY P. DEUTSCHER PMCID: PMC1383581 The role of the Brr5/Ysh1 C-terminal domain and its homolog Syc1 in mRNA 3′-end processing in Saccharomyces cerevisiae ALEXANDER ZHELKOVSKY, YOKO TACAHASHI, TOMMY NASSER, XIAOYUAN HE, ULRIKE STERZER, TORBEN HEICK JENSEN, HORST DOMDEY, and CLAIRE MOORE PMCID: PMC1383582 Ligation of the hairpin ribozyme in cis induced by freezing and dehydration SERGEI A. KAZAKOV, SVETLANA V. BALATSKAYA, and BRIAN H. JOHNSTON PMCID: PMC1383583 Characterization of multimeric complexes formed by the human PTB1 protein on RNA CAROLINE CLERTE and KATHLEEN B. HALL PMCID: PMC1383584 T. brucei RNA editing: Action of the U-insertional TUTase within a U-deletion cycle ALEVTINA G. ZHELONKINA, SEAN F. O’HEARN, JULIE A. LAW, JORGE CRUZ-REYES, CATHERINE E. HUANG, VADIM S. ALATORTSEV, and BARBARA SOLLNER-WEBB PMCID: PMC1383585 Characterization of a Trypanosoma brucei RNA cap (guanine N-7) methyltransferase MEGAN P. HALL and C. KIONG HO PMCID: PMC1383586 Distal regulation of alternative splicing by splicing enhancer in equine β-casein intron 1 TINA LENASI, B. MATIJA PETERLIN, and PETER DOVC PMCID: PMC1383587 Nuclear RNA surveillance in Saccharomyces cerevisiae: Trf4p-dependent polyadenylation of nascent hypomethylated tRNA and an aberrant form of 5S rRNA SUJATHA KADABA, XUYING WANG, and JAMES T. ANDERSON PMCID: PMC1383588 Method Pyrrolo-C as a fluorescent probe for monitoring RNA secondary structure formation REBECCA A. TINSLEY and NILS G. WALTER PMCID: PMC1383589 Erratum RNA. 2006 March; 12(3): 530. PMCID: PMC1383590 Corrects: MARTA KWAPISZ, et al. Rsp5 ubiquitin ligase modulates translation accuracy in yeast Saccharomyces cerevisiae. RNA. 2005 November; 11(11): 1710–1718. |
