| | This journal provides immediate access to some articles. Bioinformatics Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification UWE OHLER, SORAYA YEKTA, LEE P. LIM, DAVID P. BARTEL, and CHRISTOPHER B. BURGE RNA. 2004 September; 10(9): 1309–1322. doi: 10.1261/rna.5206304.PMCID: PMC1370619 BayesFold: Rational 2° folds that combine thermodynamic, covariation, and chemical data for aligned RNA sequences ROB KNIGHT, AMANDA BIRMINGHAM, and MICHAEL YARUS RNA. 2004 September; 10(9): 1323–1336. doi: 10.1261/rna.5168504.PMCID: PMC1370620 Detection of genome-scale ordered RNA structure (GORS) in genomes of positive-stranded RNA viruses: Implications for virus evolution and host persistence PETER SIMMONDS, ANDREW TUPLIN, and DAVID J. EVANS RNA. 2004 September; 10(9): 1337–1351. doi: 10.1261/rna.7640104.PMCID: PMC1370621 Reports The yeast Apq12 protein affects nucleocytoplasmic mRNA transport KRISTIAN E. BAKER, JEFF COLLER, and ROY PARKER RNA. 2004 September; 10(9): 1352–1358. doi: 10.1261/rna.7420504.PMCID: PMC1370622 A stop codon-dependent internal secondary translation initiation region in Escherichia coli rpoS POCHI RAMALINGAM SUBBARAYAN and MALANCHA SARKAR RNA. 2004 September; 10(9): 1359–1365. doi: 10.1261/rna.7500604.PMCID: PMC1370623 Articles The contribution of metal ions to the structural stability of the large ribosomal subunit DANIEL J. KLEIN, PETER B. MOORE, and THOMAS A. STEITZ RNA. 2004 September; 10(9): 1366–1379. doi: 10.1261/rna.7390804.PMCID: PMC1370624 Solution structure of an RNA stem–loop derived from the 3′ conserved region of eel LINE UnaL2 SEIKI BABA, MASAKI KAJIKAWA, NORIHIRO OKADA, and GOTA KAWAI RNA. 2004 September; 10(9): 1380–1387. doi: 10.1261/rna.7460104.PMCID: PMC1370625 Solution structure of the pseudo-5′ splice site of a retroviral splicing suppressor JAVIER CABELLO-VILLEGAS, KEITH E. GILES, ANA MARIA SOTO, PING YU, ANNIE MOUGIN, KAREN L. BEEMON, and YUN-XING WANG RNA. 2004 September; 10(9): 1388–1398. doi: 10.1261/rna.7020804.PMCID: PMC1370626 Functional analysis of mRNA scavenger decapping enzymes SHIN-WU LIU, XINFU JIAO, HUDAN LIU, MEIGANG GU, CHRISTOPHER D. LIMA, and MEGERDITCH KILEDJIAN RNA. 2004 September; 10(9): 1412–1422. doi: 10.1261/rna.7660804.PMCID: PMC1370627 Crystal structure of archaeal ribonuclease P protein Ph1771p from Pyrococcus horikoshii OT3: An archaeal homolog of eukaryotic ribonuclease P protein Rpp29 TOMOYUKI NUMATA, IKUKO ISHIMATSU, YOSHIMITSU KAKUTA, ISAO TANAKA, and MAKOTO KIMURA RNA. 2004 September; 10(9): 1423–1432. doi: 10.1261/rna.7560904.PMCID: PMC1370628 High-affinity binding site for a group II intron-encoded reverse transcriptase/maturase within a stem–loop structure in the intron RNA KAZUO WATANABE and ALAN M. LAMBOWITZ RNA. 2004 September; 10(9): 1433–1443. doi: 10.1261/rna.7730104.PMCID: PMC1370629 Tissue-specific modification of gld-2 mRNA in C. elegans: Likely C-to-U editing LIAOTENG WANG, JUDITH KIMBLE, and MARVIN WICKENS RNA. 2004 September; 10(9): 1444–1448. doi: 10.1261/rna.7570804.PMCID: PMC1370630 Specificity of the STAR/GSG domain protein Qk1: Implications for the regulation of myelination SEAN P. RYDER and JAMES R. WILLIAMSON RNA. 2004 September; 10(9): 1449–1458. doi: 10.1261/rna.7780504.PMCID: PMC1370631 Method Ligand-induced changes in 2-aminopurine fluorescence as a probe for small molecule binding to HIV-1 TAR RNA THOMAS D. BRADRICK and JOHN P. MARINO RNA. 2004 September; 10(9): 1459–1468. doi: 10.1261/rna.7620304.PMCID: PMC1370632 Chemical synthesis and binding activity of the trypanosomatid cap-4 structure MAGDALENA LEWDOROWICZ, YAEL YOFFE, JOANNA ZUBEREK, JACEK JEMIELITY, JANUSZ STEPINSKI, RYSZARD KIERZEK, RYSZARD STOLARSKI, MICHAL SHAPIRA, and EDWARD DARZYNKIEWICZ RNA. 2004 September; 10(9): 1469–1478. doi: 10.1261/rna.7510504.PMCID: PMC1370633 Novel cap analogs for in vitro synthesis of mRNAs with high translational efficiency EWA GRUDZIEN, JANUSZ STEPINSKI, MARZENA JANKOWSKA-ANYSZKA, RYSZARD STOLARSKI, EDWARD DARZYNKIEWICZ, and ROBERT E. RHOADS RNA. 2004 September; 10(9): 1479–1487. doi: 10.1261/rna.7380904.PMCID: PMC1370634 |