| | Articles Plant orthologs of p300/CBP: conservation of a core domain in metazoan p300/CBP acetyltransferase-related
proteins Lorenza Bordoli, Marco Netsch, Urs Lüthi, Werner Lutz, and Richard Eckner PMCID: PMC30400 Stable expression in yeast of the mature form of human telomerase RNA depends on its association
with the box H/ACA small nucleolar RNP proteins Cbf5p,
Nhp2p and Nop10p Christophe Dez, Anthony Henras, Bruno Faucon, Denis
L. J. Lafontaine, Michèle Caizergues-Ferrer, and Yves Henry PMCID: PMC30409 A thermostable endonuclease III homolog from the archaeon Pyrobaculum aerophilum Hanjing Yang, Isabella T. Phan, Sorel Fitz-Gibbon, Mahmud K. K. Shivji, Richard D. Wood, Wendy M. Clendenin, Elizabeth
C. Hyman, and Jeffrey
H. Miller PMCID: PMC30402 Replicative helicases can translocate through abasic site-induced covalent topoisomerase IV–DNA
complexes Molly E. Shea and Hiroshi Hiasa PMCID: PMC30393 Triplex forming oligonucleotide targeted to 3′UTR downregulates the
expression of the bcl-2
proto-oncogene in HeLa cells Changxian Shen, Andreas Buck, Gerhard Mehrke, Bülent Polat, Hans-Jügen Gross, Max Bachem, and Sven Reske PMCID: PMC30398 Leucine zipper motif of chicken histone acetyltransferase-1 is essential for in vivo and in vitro interactions with the p48 subunit of chicken chromatin assembly factor-1 Ahyar Ahmad, Nahoko Nagamatsu, Haruna Kouriki, Yasunari Takami, and Tatsuo Nakayama PMCID: PMC30395 KH domain: one motif, two folds Nick V. Grishin PMCID: PMC30387 Analysis of six prophages in Lactococcus lactis IL1403: different genetic structure
of temperate and virulent phage populations Alain Chopin, Alexander Bolotin, Alexei Sorokin, S.
Dusko Ehrlich, and Marie-Christine Chopin PMCID: PMC30408 Specific down-regulation of an engineered human cyclin D1 promoter by a novel DNA-binding ligand
in intact cells Megan E. Laurance, D.
Barry Starr, Emil
F. Michelotti, Elaine Cheung, Carolyn Gonzalez, Albert
W. Tam, Jon Deikman, Cynthia
A. Edwards, and A.
Jane Bardwell PMCID: PMC30392 RAD51 supports spontaneous non-homologous recombination in mammalian cells, but not the corresponding process induced by
topoisomerase inhibitors Catherine Arnaudeau, Lorène Rozier, Christophe Cazaux, Martine Defais, Dag Jenssen, and Thomas Helleday PMCID: PMC30407 Antisense-mediated decrease in
DNA ligase III expression results in reduced mitochondrial DNA integrity Uma Lakshmipathy and Colin Campbell PMCID: PMC30390 Ribosomal protein S7 from Escherichia coli uses the same determinants to bind 16S ribosomal RNA and
its messenger RNA Francis Robert and Léa Brakier-Gingras PMCID: PMC30405 Combined transcriptome and proteome analysis as
a powerful approach to study genes under glucose repression in Bacillus subtilis Ken-ichi Yoshida, Kazuo Kobayashi, Yasuhiko Miwa, Choong-Min Kang, Masayuki Matsunaga, Hirotake Yamaguchi, Shigeo Tojo, Mami Yamamoto, Ryoko Nishi, Naotake Ogasawara, Tatsuo Nakayama, and Yasutaro Fujita PMCID: PMC30401 Induced fit DNA recognition by a minor groove binding analogue of Hoechst 33258: fluctuations in
DNA A tract structure investigated by NMR and molecular dynamics simulations Clare E. Bostock-Smith, Sarah
A. Harris, Charles
A. Laughton, and Mark
S. Searle PMCID: PMC30379 RNA editing in Trypanosoma brucei: characterization of gRNA U-tail interactions with partially
edited mRNA substrates Sheldon S. Leung and Donna
J. Koslowsky PMCID: PMC30404 Mutagenesis of the peptidyltransferase center of
23S rRNA: the invariant U2449 is dispensable Michael O’Connor, Wyan-Ching
Mimi Lee, Anuj Mankad, Catherine
L. Squires, and Albert E. Dahlberg PMCID: PMC30386 An alteration in concatameric structure is associated with efficient segregation of plasmids in
transfected Plasmodium falciparum parasites Rebecca A. O’Donnell, Peter
R. Preiser, Donald
H. Williamson, Peter
W. Moore, Alan F. Cowman, and Brendan
S. Crabb PMCID: PMC30406 The Crithidia fasciculata RNH1 gene encodes both nuclear and mitochondrial
isoforms of RNase H Michele L. Engel, Jane
C. Hines, and Dan
S. Ray PMCID: PMC30385 Smad proteins function as co-modulators for MEF2 transcriptional regulatory proteins Zoë A. Quinn, Chih-Chin Yang, Jeffrey L. Wrana, and John C. McDermott PMCID: PMC30396 Enhanced activity of adenine-DNA glycosylase (Myh) by apurinic/apyrimidinic endonuclease
(Ape1) in mammalian base excision repair of an A/GO mismatch Hanjing Yang, Wendy
M. Clendenin, Donny Wong, Bruce Demple, Malgorzata
M. Slupska, Ju-Huei Chiang, and Jeffrey
H. Miller PMCID: PMC30391 Pseudoknots in prion protein mRNAs confirmed by comparative sequence analysis and pattern searching Isabelle Barrette, Guylaine Poisson, Patrick Gendron, and François Major PMCID: PMC30388 Rational design of a bacterial transcriptional cascade for amplifying gene expression capacity Angel Cebolla, Carolina Sousa, and Víctor de Lorenzo PMCID: PMC30378 Juglone, an inhibitor of the peptidyl-prolyl isomerase Pin1, also directly blocks transcription Sheng-Hao Chao, Arno L. Greenleaf, and David H. Price PMCID: PMC30403 Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes Lee Ann McCue, William Thompson, C. Steven Carmack, Michael P. Ryan, Jun S. Liu, Victoria Derbyshire, and Charles E. Lawrence PMCID: PMC30389 Triplex targeting of human PDGF-B (c-sis, proto-oncogene) promoter specifically
inhibits factors binding and PDGF-B transcription Jing Liu, Ren-Huan Xu, You-Xin Jin, and De-Bao Wang PMCID: PMC30399 Transcriptional activation of the small GTPase gene rhoB by genotoxic stress
is regulated via a CCAAT element Gerhard Fritz and Bernd Kaina PMCID: PMC30383 Induction and repression of DAN1 and the family of anaerobic mannoprotein genes
in Saccharomyces cerevisiae occurs through a complex
array of regulatory sites Brian D. Cohen, Odeniel Sertil, Natalia E. Abramova, Kelvin
J. A. Davies, and Charles V. Lowry PMCID: PMC30382 Multiple sites of replication initiation in the human β-globin gene locus Sobha Kamath and Michael Leffak PMCID: PMC30394 Digging for dead genes: an analysis of the characteristics of the pseudogene population in the Caenorhabditis elegans genome Paul M. Harrison, Nathaniel Echols, and Mark
B. Gerstein PMCID: PMC30377 Multiple four-stranded conformations
of human telomere sequence d(CCCTAA) in solution Kenji Kanaori, Naoko Shibayama, Keigo Gohda, Kunihiko Tajima, and Keisuke Makino PMCID: PMC30397 Inhibition of poly(ADP-ribose) polymerase activity is insufficient to induce tetraploidy Cynthia M. Simbulan-Rosenthal, Dean
S. Rosenthal, RuiBai Luo, Jia-He Li, Jie Zhang, and Mark E. Smulson PMCID: PMC30380 Transformation of malaria parasites by the spontaneous uptake and expression of DNA from human erythrocytes Kirk W. Deitsch, Casey
L. Driskill, and Thomas
E. Wellems PMCID: PMC30384 Topography of lacUV5 initiation complexes Vasily M. Studitsky, Konstantin
L. Brodolin, Ye Liu, and Andrei
D. Mirzabekov PMCID: PMC30381 NAR Methods Online Orthogonal combinatorial mutagenesis: a codon-level combinatorial mutagenesis method useful for low multiplicity
and amino acid-scanning protocols Paul Gaytán, Jorge Yáñez, Filiberto Sánchez, and Xavier Soberón PMCID: PMC30410 A method for the generation of conditional gene repair mutations in mice Ioannis Dragatsis and Scott Zeitlin PMCID: PMC30411 DNA sequencing and genotyping by transcriptional synthesis of chain-terminated RNA ladders and
MALDI-TOF mass spectrometry Young-Soo Kwon, Kai Tang, Charles R. Cantor, Hubert Köster, and Changwon Kang PMCID: PMC30412 Measurement of 8-hydroxy-2′-deoxyguanosine in DNA by high-performance
liquid chromatography-mass spectrometry: comparison with measurement
by gas chromatography-mass spectrometry Miral Dizdaroglu, Pawel Jaruga, and Henry Rodriguez PMCID: PMC30413 Simultaneous A8344G heteroplasmy and mitochondrial DNA copy number quantification in Myoclonus Epilepsy
and Ragged-Red Fibers (MERRF) syndrome by a multiplex Molecular
Beacon based real-time fluorescence PCR Károly Szuhai, Jody
M. van den Ouweland, Roeland
W. Dirks, Marc Lemaître, Jean-Christophe Truffert, George M. Janssen, Hans J. Tanke, Elisabeth Holme, J. Antonie Maassen, and Anton
K. Raap PMCID: PMC30414 A new method for generating point mutations in bacterial artificial chromosomes by homologous recombination
in Escherichia coli Maria D. Lalioti and John
K. Heath PMCID: PMC30415 |
