| | Research Articles Identifying 5-methylcytosine and related modifications in DNA genomes. T Rein, M L DePamphilis, and H Zorbas PMCID: PMC147551 Characterization of protein-binding to the spinach chloroplast psbA mRNA 5' untranslated region. C Alexander, N Faber, and P Klaff PMCID: PMC147569 Selective inhibition of cell-free translation by oligonucleotides targeted to a mRNA hairpin structure. R Le Tinévez, R K Mishra, and J J Toulmé PMCID: PMC147550 Extending the cleavage rules for the hammerhead ribozyme: mutating adenosine15.1 to inosine15.1 changes the cleavage site specificity from N16.2U16.1H17 to N16.2C16.1H17. J Ludwig, M Blaschke, and B S Sproat PMCID: PMC147568 Analyzing genomes with cumulative skew diagrams. A Grigoriev PMCID: PMC147580 A novel splice variant of the transcription factor Nrf1 interacts with the TNFalpha promoter and stimulates transcription. E E Prieschl, V Novotny, R Csonga, D Jaksche, A Elbe-Bürger, W Thumb, M Auer, G Stingl, and T Baumruker PMCID: PMC147553 Effects of phosphate neutralization on the shape of the AP-1 transcription factor binding site in duplex DNA. L A Tomky, J K Strauss-Soukup, and L J Maher, 3rd PMCID: PMC147564 Quantitative parameters for amino acid-base interaction: implications for prediction of protein-DNA binding sites. Y Mandel-Gutfreund and H Margalit PMCID: PMC147552 oriGNAI3: a narrow zone of preferential replication initiation in mammalian cells identified by 2D gel and competitive PCR replicon mapping techniques. F Toledo, B Baron, M A Fernandez, A M Lachagès, V Mayau, G Buttin, and M Debatisse PMCID: PMC147574 In vitro DNA binding of the archaeal protein Sso7d induces negative supercoiling at temperatures typical for thermophilic growth. P López-García, S Knapp, R Ladenstein, and P Forterre PMCID: PMC147572 Genomic footprinting of the yeast zinc finger protein Rme1p and its roles in repression of the meiotic activator IME1. M Shimizu, W Li, P A Covitz, M Hara, H Shindo, and A P Mitchell PMCID: PMC147578 Structural requirements for DNA binding of GCM proteins. J Schreiber, J Enderich, and M Wegner PMCID: PMC147556 A differential response of wild type and mutant promoters to TFIIIB70 overexpression in vivo and in vitro. I Sethy-Coraci, R D Moir, A López-de-León, and I M Willis PMCID: PMC147558 Cloned human FMR1 trinucleotide repeats exhibit a length- and orientation-dependent instability suggestive of in vivo lagging strand secondary structure. M C Hirst and P J White PMCID: PMC147547 Cytarabine-induced destabilization of a model Okazaki fragment. W H Gmeiner, A Skradis, R T Pon, and J Liu PMCID: PMC147563 Sequence specificity of illegitimate plasmid recombination in Bacillus subtilis: possible recognition sites for DNA topoisomerase I. R Meima, G J Haan, G Venema, S Bron, and S de Jong PMCID: PMC147579 Escherichia coli ribosomal protein L3 stimulates the helicase activity of the Bacillus stearothermophilus PcrA helicase. P Soultanas, M S Dillingham, and D B Wigley PMCID: PMC147557 Step-wise DNA relaxation and decatenation by NaeI-43K. K Jo and M D Topal PMCID: PMC147561 Solution structure of duplex DNA containing an extrahelical abasic site analog determined by NMR spectroscopy and molecular dynamics. Z Lin, K N Hung, A P Grollman, and C de los Santos PMCID: PMC147573 Interaction of transcription factor YY1 with a replication-enhancing element, REE1, in an autonomously replicating human chromosome fragment. C Obuse, T Okazaki, and H Masukata PMCID: PMC147559 Rapid design of denaturing gradient-based two-dimensional electrophoretic gene mutational scanning tests. N J van Orsouw, R K Dhanda, R D Rines, W M Smith, I Sigalas, C Eng, and J Vijg PMCID: PMC147570 High level transactivation by the ecdysone receptor complex at the core recognition motif. M Vögtli, C Elke, M O Imhof, and M Lezzi PMCID: PMC147576 Meiotic double-strand breaks in yeast artificial chromosomes containing human DNA. G Ira, E Svetlova, and J Filipski PMCID: PMC147548 c-Myc gene single-strand binding protein-1, MSSP-1, suppresses transcription of alpha-smooth muscle actin gene in chicken visceral smooth muscle cells. K Kimura, H Saga, K Hayashi, H Obata, Y Chimori, H Ariga, and K Sobue PMCID: PMC147545 Analysis of sequences and predicted structures required for viral satellite RNA accumulation by in vivo genetic selection. C D Carpenter and A E Simon PMCID: PMC147565 Upf1 and Upf2 proteins mediate normal yeast mRNA degradation when translation initiation is limited. C A Barnes PMCID: PMC147546 Heterologous complementation reveals that mutant alleles of QSR1 render 60S ribosomal subunits unstable and translationally inactive. F A Dick and B L Trumpower PMCID: PMC147575 Sp1, but not Sp3, functions to mediate promoter activation by TGF-beta through canonical Sp1 binding sites. J M Li, M B Datto, X Shen, P P Hu, Y Yu, and X F Wang PMCID: PMC147581 Oligomeric properties and DNA binding specificities of repressor isoforms from the Streptomyces bacteriophage phiC31. S E Wilson and M C Smith PMCID: PMC147562 Adjacent proline residues in the inhibitory domain of the Oct-2 transcription factor play distinct functional roles. Y Z Liu, I K Lee, I Locke, S J Dawson, and D S Latchman PMCID: PMC147571 Crystal structures of B-DNA with incorporated 2'-deoxy-2'-fluoro-arabino-furanosyl thymines: implications of conformational preorganization for duplex stability. I Berger, V Tereshko, H Ikeda, V E Marquez, and M Egli PMCID: PMC147554 DNA condensation for gene therapy as monitored by atomic force microscopy. H G Hansma, R Golan, W Hsieh, C P Lollo, P Mullen-Ley, and D Kwoh PMCID: PMC147577 Sequencing DNA using mass spectrometry for ladder detection. N I Taranenko, S L Allman, V V Golovlev, N V Taranenko, N R Isola, and C H Chen PMCID: PMC147544 Multiple parameters determine the specificity of transcriptional response by nuclear receptors HNF-4, ARP-1, PPAR, RAR and RXR through common response elements. H Nakshatri and P Bhat-Nakshatri PMCID: PMC147560 Preparation of active tRNA gene transcripts devoid of 3'-extended products and dimers. N Kholod, K Vassilenko, M Shlyapnikov, V Ksenzenko, and L Kisselev PMCID: PMC147566 Oligoribonucleotide circularization by 'template-mediated' ligation with T4 RNA ligase: synthesis of circular hammerhead ribozymes. L Wang and D E Ruffner PMCID: PMC147549 Direct visualization of site-specific and strand-specific DNA methylation patterns in automated DNA sequencing data. B S Rao and A Buckler-White PMCID: PMC147555 New positive/negative selectable markers for mammalian cells on the basis of Blasticidin deaminase-thymidine kinase fusions. C Karreman PMCID: PMC147567 |
