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Volume 26(1);  January 1, 1998
Research Articles
GenBank.
D A Benson, M S Boguski, D J Lipman, J Ostell, and B F Ouellette
Nucleic Acids Res. 1998 January 1; 26(1): 1–7.
PMCID: PMC147205
The EMBL nucleotide sequence database.
G Stoesser, M A Moseley, J Sleep, M McGowran, M Garcia-Pastor, and P Sterk
Nucleic Acids Res. 1998 January 1; 26(1): 8–15.
PMCID: PMC147241
DNA Data Bank of Japan at work on genome sequence data.
Y Tateno, K Fukami-Kobayashi, S Miyazaki, H Sugawara, and T Gojobori
Nucleic Acids Res. 1998 January 1; 26(1): 16–20.
PMCID: PMC147185
The Genome Sequence DataBase (GSDB): improving data quality and data access.
C Harger, M Skupski, J Bingham, A Farmer, S Hoisie, P Hraber, D Kiphart, L Krakowski, M McLeod, J Schwertfeger, G Seluja, A Siepel, G Singh, D Stamper, P Steadman, N Thayer, R Thompson, P Wargo, M Waugh, J J Zhuang, and P A Schad
Nucleic Acids Res. 1998 January 1; 26(1): 21–26.
PMCID: PMC147232
The PIR-International Protein Sequence Database.
W C Barker, J S Garavelli, D H Haft, L T Hunt, C R Marzec, B C Orcutt, G Y Srinivasarao, L S Yeh, R S Ledley, H W Mewes, F Pfeiffer, and A Tsugita
Nucleic Acids Res. 1998 January 1; 26(1): 27–32.
PMCID: PMC147240
MIPS: a database for protein sequences and complete genomes.
H W Mewes, J Hani, F Pfeiffer, and D Frishman
Nucleic Acids Res. 1998 January 1; 26(1): 33–37.
PMCID: PMC147239
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998.
A Bairoch and R Apweiler
Nucleic Acids Res. 1998 January 1; 26(1): 38–42.
PMCID: PMC147215
MPW: the Metabolic Pathways Database.
E Selkov, Jr, Y Grechkin, N Mikhailova, and E Selkov
Nucleic Acids Res. 1998 January 1; 26(1): 43–45.
PMCID: PMC147231
Compilation of DNA sequences of Escherichia coli K12: description of the interactive databases ECD and ECDC.
M Kröger and R Wahl
Nucleic Acids Res. 1998 January 1; 26(1): 46–49.
PMCID: PMC147217
EcoCyc: Encyclopedia of Escherichia coli genes and metabolism.
P D Karp, M Riley, S M Paley, A Pellegrini-Toole, and M Krummenacker
Nucleic Acids Res. 1998 January 1; 26(1): 50–53.
PMCID: PMC147256
Genes and proteins of Escherichia coli K-12.
M Riley
Nucleic Acids Res. 1998 January 1; 26(1): 54.
PMCID: PMC147169
RegulonDB: a database on transcriptional regulation in Escherichia coli.
A M Huerta, H Salgado, D Thieffry, and J Collado-Vides
Nucleic Acids Res. 1998 January 1; 26(1): 55–59.
PMCID: PMC147189
The non-redundant Bacillus subtilis (NRSub) database: update 1998.
G Perrière, M Gouy, and T Gojobori
Nucleic Acids Res. 1998 January 1; 26(1): 60–62.
PMCID: PMC147236
CyanoBase, a www database containing the complete nucleotide sequence of the genome of Synechocystis sp. strain PCC6803.
Y Nakamura, T Kaneko, M Hirosawa, N Miyajima, and S Tabata
Nucleic Acids Res. 1998 January 1; 26(1): 63–67.
PMCID: PMC147195
The Yeast Protein Database (YPD): a curated proteome database for Saccharomyces cerevisiae.
P E Hodges, W E Payne, and J I Garrels
Nucleic Acids Res. 1998 January 1; 26(1): 68–72.
PMCID: PMC147175
SGD: Saccharomyces Genome Database.
J M Cherry, C Adler, C Ball, S A Chervitz, S S Dwight, E T Hester, Y Jia, G Juvik, T Roe, M Schroeder, S Weng, and D Botstein
Nucleic Acids Res. 1998 January 1; 26(1): 73–79.
PMCID: PMC147204
AtDB, the Arabidopsis thaliana database, and graphical-web-display of progress by the Arabidopsis Genome Initiative.
D J Flanders, S Weng, F X Petel, and J M Cherry
Nucleic Acids Res. 1998 January 1; 26(1): 80–84.
PMCID: PMC147237
FlyBase: a Drosophila database. Flybase Consortium.
Nucleic Acids Res. 1998 January 1; 26(1): 85–88.
PMCID: PMC147222
FlyNets and GIF-DB, two internet databases for molecular interactions in Drosophila melanogaster.
E Mohr, F Horn, F Janody, C Sanchez, V Pillet, B Bellon, L Röder, and B Jacq
Nucleic Acids Res. 1998 January 1; 26(1): 89–93.
PMCID: PMC147170
GDB: the Human Genome Database.
S I Letovsky, R W Cottingham, C J Porter, and P W Li
Nucleic Acids Res. 1998 January 1; 26(1): 94–99.
PMCID: PMC147203
Virgil: a database of rich links between GDB and GenBank.
F Achard and E Barillot
Nucleic Acids Res. 1998 January 1; 26(1): 100–101.
PMCID: PMC147227
The Radiation Hybrid Database.
P Lijnzaad, C Helgesen, and P Rodriguez-Tomé
Nucleic Acids Res. 1998 January 1; 26(1): 102–105.
PMCID: PMC147230
HuGeMap: a distributed and integrated Human Genome Map database.
E Barillot, F Guyon, C Cussat-Blanc, E Viara, and G Vaysseix
Nucleic Acids Res. 1998 January 1; 26(1): 106–107.
PMCID: PMC147238
IXDB, an X chromosome integrated database.
U Leser, R Wagner, A Grigoriev, H Lehrach, and H Roest Crollius
Nucleic Acids Res. 1998 January 1; 26(1): 108–111.
PMCID: PMC147242
MITOMAP: a human mitochondrial genome database--1998 update.
A M Kogelnik, M T Lott, M D Brown, S B Navathe, and D C Wallace
Nucleic Acids Res. 1998 January 1; 26(1): 112–115.
PMCID: PMC147233
The mitBASE human dataset structure.
M Attimonelli, D Caló, J M Cooper, A de Montalvo, F Licciulli, D Sasanelli, K Stevens, B S Malladi, C Saccone, and A H Shapira
Nucleic Acids Res. 1998 January 1; 26(1): 116–119.
PMCID: PMC147181
Update of MmtDB: a Metazoa mitochondrial DNA variants database.
M Attimonelli, D Calò, A De Montalvo, C Lanave, D Sasanelli, M Tommaseo Ponzetta, and C Saccone
Nucleic Acids Res. 1998 January 1; 26(1): 120–125.
PMCID: PMC147228
Compilation of human mtDNA control region sequences.
O Handt, S Meyer, and A von Haeseler
Nucleic Acids Res. 1998 January 1; 26(1): 126–129.
PMCID: PMC147248
The Mouse Genome Database (MGD): a community resource. Status and enhancements. The Mouse Genome Informatics Group.
J A Blake, J T Eppig, J E Richardson, and M T Davisson
Nucleic Acids Res. 1998 January 1; 26(1): 130–137.
PMCID: PMC147182
The Organelle Genome Database Project (GOBASE).
M Korab-Laskowska, P Rioux, N Brossard, T G Littlejohn, M W Gray, B F Lang, and G Burger
Nucleic Acids Res. 1998 January 1; 26(1): 138–144.
PMCID: PMC147200
Molecular Probe Data Base (MPDB).
M G Campi, P Romano, L Milanesi, D Marra, M A Manniello, B Iannotta, G Rondanina, E Grasso, T Ruzzon, and L Santi
Nucleic Acids Res. 1998 January 1; 26(1): 145–147.
PMCID: PMC147247
Compilation of tRNA sequences and sequences of tRNA genes.
M Sprinzl, C Horn, M Brown, A Ioudovitch, and S Steinberg
Nucleic Acids Res. 1998 January 1; 26(1): 148–153.
PMCID: PMC147216
A FastA based compilation of higher plant mitochondrial tRNA genes.
A Sagliano, M Volpicella, R Gallerani, and L R Ceci
Nucleic Acids Res. 1998 January 1; 26(1): 154–155.
PMCID: PMC147198
5S rRNA Data Bank.
M Szymanski, T Specht, M Z Barciszewska, J Barciszewski, and V A Erdmann
Nucleic Acids Res. 1998 January 1; 26(1): 156–159.
PMCID: PMC147219
Small RNA database.
J Gu, Y Chen, and R Reddy
Nucleic Acids Res. 1998 January 1; 26(1): 160–162.
PMCID: PMC147212
The tmRNA Website.
K P Williams and D P Bartel
Nucleic Acids Res. 1998 January 1; 26(1): 163–165.
PMCID: PMC147250
The tmRNA database (tmRDB).
C Zwieb, N Larsen, and J Wower
Nucleic Acids Res. 1998 January 1; 26(1): 166–167.
PMCID: PMC147220
The guide RNA database.
A E Souza and H U Göringer
Nucleic Acids Res. 1998 January 1; 26(1): 168–169.
PMCID: PMC147224
U-insertion/deletion Edited Sequence Database.
L Simpson, S H Wang, O H Thiemann, J D Alfonzo, D A Maslov, and H A Avila
Nucleic Acids Res. 1998 January 1; 26(1): 170–176.
PMCID: PMC147258
The Signal Recognition Particle Database (SRPDB).
N Larsen, T Samuelsson, and C Zwieb
Nucleic Acids Res. 1998 January 1; 26(1): 177–178.
PMCID: PMC147211
Database on the structure of small ribosomal subunit RNA.
Y Van de Peer, A Caers, P De Rijk, and R De Wachter
Nucleic Acids Res. 1998 January 1; 26(1): 179–182.
PMCID: PMC147221
Database on the structure of large ribosomal subunit RNA.
P De Rijk, A Caers, Y Van de Peer, and R De Wachter
Nucleic Acids Res. 1998 January 1; 26(1): 183–186.
PMCID: PMC147202
The Database of Ribosomal Cross links (DRC).
P V Baranov, P V Sergiev, O A Dontsova, A A Bogdanov, and R Brimacombe
Nucleic Acids Res. 1998 January 1; 26(1): 187–189.
PMCID: PMC147229
The viroid and viroid-like RNA database.
D A Lafontaine, S Mercure, V Poisson, and J P Perreault
Nucleic Acids Res. 1998 January 1; 26(1): 190–191.
PMCID: PMC147186
UTRdb: a specialized database of 5'- and 3'-untranslated regions of eukaryotic mRNAs.
G Pesole, S Liuni, G Grillo, and C Saccone
Nucleic Acids Res. 1998 January 1; 26(1): 192–195.
PMCID: PMC147191
The RNA modification database--1998.
J A McCloskey and P F Crain
Nucleic Acids Res. 1998 January 1; 26(1): 196–197.
PMCID: PMC147197
Databases and software for the analysis of mutations in the human p53 gene, human hprt gene and both the lacI and lacZ gene in transgenic rodents.
N F Cariello, G R Douglas, N J Gorelick, D W Hart, J D Wilson, and T Soussi
Nucleic Acids Res. 1998 January 1; 26(1): 198–199.
PMCID: PMC147201
p53 gene mutation: software and database.
C Béroud and T Soussi
Nucleic Acids Res. 1998 January 1; 26(1): 200–204.
PMCID: PMC147206
IARC Database of p53 gene mutations in human tumors and cell lines: updated compilation, revised formats and new visualisation tools.
P Hainaut, T Hernandez, A Robinson, P Rodriguez-Tome, T Flores, M Hollstein, C C Harris, and R Montesano
Nucleic Acids Res. 1998 January 1; 26(1): 205–213.
PMCID: PMC147235
A database of germline p53 mutations in cancer-prone families.
Z Sedlacek, R Kodet, A Poustka, and P Goetz
Nucleic Acids Res. 1998 January 1; 26(1): 214–215.
PMCID: PMC147257
The factor VIII Structure and Mutation Resource Site: HAMSTeRS version 4.
G Kemball-Cook, E G Tuddenham, and A I Wacey
Nucleic Acids Res. 1998 January 1; 26(1): 216–219.
PMCID: PMC147260
PAH Mutation Analysis Consortium Database: 1997. Prototype for relational locus-specific mutation databases.
P M Nowacki, S Byck, L Prevost, and C R Scriver
Nucleic Acids Res. 1998 January 1; 26(1): 220–225.
PMCID: PMC147234
aCHEdb: the database system for ESTHER, the alpha/beta fold family of proteins and the Cholinesterase gene server.
X Cousin, T Hotelier, K Giles, J P Toutant, and A Chatonnet
Nucleic Acids Res. 1998 January 1; 26(1): 226–228.
PMCID: PMC147245
Marfan Database (third edition): new mutations and new routines for the software.
G Collod-Béroud, C Béroud, L Ades, C Black, M Boxer, D J Brock, K J Holman, A de Paepe, U Francke, U Grau, C Hayward, H G Klein, W Liu, L Nuytinck, L Peltonen, A B Alvarez Perez, T Rantamäki, C Junien, and C Boileau
Nucleic Acids Res. 1998 January 1; 26(1): 229–233.
PMCID: PMC147226
The Androgen Receptor Gene Mutations Database.
B Gottlieb, H Lehvaslaiho, L K Beitel, R Lumbroso, L Pinsky, and M Trifiro
Nucleic Acids Res. 1998 January 1; 26(1): 234–238.
PMCID: PMC147184
The Nuclear Receptor Resource: a growing family.
E Martinez, D D Moore, E Keller, D Pearce, J P Vanden Heuvel, V Robinson, B Gottlieb, P MacDonald, S Simons, Jr, E Sanchez, and M Danielsen
Nucleic Acids Res. 1998 January 1; 26(1): 239–241.
PMCID: PMC147223
BTKbase, mutation database for X-linked agammaglobulinemia (XLA).
M Vihinen, O Brandau, L J Brandén, S P Kwan, I Lappalainen, T Lester, J G Noordzij, H D Ochs, J Ollila, S M Pienaar, P Riikonen, B K Saha, and C I Smith
Nucleic Acids Res. 1998 January 1; 26(1): 242–247.
PMCID: PMC147244
LDLR Database (second edition): new additions to the database and the software, and results of the first molecular analysis.
M Varret, J P Rabés, R Thiart, M J Kotze, H Baron, A Cenarro, O Descamps, M Ebhardt, J C Hondelijn, G M Kostner, Y Miyake, M Pocovi, H Schmidt, H Schuster, M Stuhrmann, T Yamamura, C Junien, C Béroud, and C Boileau
Nucleic Acids Res. 1998 January 1; 26(1): 248–252.
PMCID: PMC147253
The Human Collagen Mutation Database 1998.
R Dalgleish
Nucleic Acids Res. 1998 January 1; 26(1): 253–255.
PMCID: PMC147171
Software and database for the analysis of mutations in the VHL gene.
C Béroud, D Joly, C Gallou, F Staroz, M T Orfanelli, and C Junien
Nucleic Acids Res. 1998 January 1; 26(1): 256–258.
PMCID: PMC147207
The Human PAX6 Mutation Database.
A Brown, M McKie, V van Heyningen, and J Prosser
Nucleic Acids Res. 1998 January 1; 26(1): 259–264.
PMCID: PMC147180
Haemophilia B: database of point mutations and short additions and deletions--eighth edition.
F Giannelli, P M Green, S S Sommer, M Poon, M Ludwig, R Schwaab, P H Reitsma, M Goossens, A Yoshioka, M S Figueiredo, and G G Brownlee
Nucleic Acids Res. 1998 January 1; 26(1): 265–268.
PMCID: PMC147172
APC gene: database of germline and somatic mutations in human tumors and cell lines.
P Laurent-Puig, C Béroud, and T Soussi
Nucleic Acids Res. 1998 January 1; 26(1): 269–270.
PMCID: PMC147178
Software and database for the analysis of mutations in the human WT1 gene.
C Jeanpierre, C Béroud, P Niaudet, and C Junien
Nucleic Acids Res. 1998 January 1; 26(1): 271–274.
PMCID: PMC147190
GPCRDB: an information system for G protein-coupled receptors.
F Horn, J Weare, M W Beukers, S Hörsch, A Bairoch, W Chen, O Edvardsen, F Campagne, and G Vriend
Nucleic Acids Res. 1998 January 1; 26(1): 275–279.
PMCID: PMC147194
Expanded versions of the 16S and 23S ribosomal RNA mutation databases (16SMDBexp and 23SMDBexp)
K L Triman, A Peister, and R A Goel
Nucleic Acids Res. 1998 January 1; 26(1): 280–284.
PMCID: PMC147214
The human gene mutation database.
D N Cooper, E V Ball, and M Krawczak
Nucleic Acids Res. 1998 January 1; 26(1): 285–287.
PMCID: PMC147254
EpoDB: a database of genes expressed during vertebrate erythropoiesis.
F Salas, J Haas, B Brunk, C J Stoeckert, Jr, and G C Overton
Nucleic Acids Res. 1998 January 1; 26(1): 288–289.
PMCID: PMC147174
A mutation spectra database for bacterial and mammalian genes: 1998.
F Hutchinson and J E Donnellan, Jr
Nucleic Acids Res. 1998 January 1; 26(1): 290–291.
PMCID: PMC147176
Database of mutations within the adenovirus 5 E1A oncogene.
J S Mymryk
Nucleic Acids Res. 1998 January 1; 26(1): 292–294.
PMCID: PMC147177
SV40 large tumor antigen (T antigen): database of mutants.
C G Robinson and J M Pipas
Nucleic Acids Res. 1998 January 1; 26(1): 295–296.
PMCID: PMC147218
IMGT, the International ImMunoGeneTics database.
M P Lefranc, V Giudicelli, C Busin, J Bodmer, W Müller, R Bontrop, M Lemaitre, A Malik, and D Chaume
Nucleic Acids Res. 1998 January 1; 26(1): 297–303.
PMCID: PMC147225
The PRINTS protein fingerprint database in its fifth year.
T K Attwood, M E Beck, D R Flower, P Scordis, and J N Selley
Nucleic Acids Res. 1998 January 1; 26(1): 304–308.
PMCID: PMC147187
Superior performance in protein homology detection with the Blocks Database servers.
S Henikoff, S Pietrokovski, and J G Henikoff
Nucleic Acids Res. 1998 January 1; 26(1): 309–312.
PMCID: PMC147168
The HSSP database of protein structure-sequence alignments and family profiles.
C Dodge, R Schneider, and C Sander
Nucleic Acids Res. 1998 January 1; 26(1): 313–315.
PMCID: PMC147243
Touring protein fold space with Dali/FSSP.
L Holm and C Sander
Nucleic Acids Res. 1998 January 1; 26(1): 316–319.
PMCID: PMC147193
Pfam: multiple sequence alignments and HMM-profiles of protein domains.
E L Sonnhammer, S R Eddy, E Birney, A Bateman, and R Durbin
Nucleic Acids Res. 1998 January 1; 26(1): 320–322.
PMCID: PMC147209
The ProDom database of protein domain families.
F Corpet, J Gouzy, and D Kahn
Nucleic Acids Res. 1998 January 1; 26(1): 323–326.
PMCID: PMC147246
An Integrated Sequence-Structure Database incorporating matching mRNA sequence, amino acid sequence and protein three-dimensional structure data.
I A Adzhubei, A A Adzhubei, and S Neidle
Nucleic Acids Res. 1998 January 1; 26(1): 327–331.
PMCID: PMC147252
Current status of the SWISS-2DPAGE database.
C Hoogland, J C Sanchez, L Tonella, A Bairoch, D F Hochstrasser, and R D Appel
Nucleic Acids Res. 1998 January 1; 26(1): 332–333.
PMCID: PMC147259
Codon usage tabulated from the international DNA sequence databases.
Y Nakamura, T Gojobori, and T Ikemura
Nucleic Acids Res. 1998 January 1; 26(1): 334.
PMCID: PMC147173
The translational signal database, TransTerm, is now a relational database.
M E Dalphin, C M Brown, P A Stockwell, and W P Tate
Nucleic Acids Res. 1998 January 1; 26(1): 335–337.
PMCID: PMC147192
REBASE - restriction enzymes and methylases.
R J Roberts and D Macelis
Nucleic Acids Res. 1998 January 1; 26(1): 338–350.
PMCID: PMC147179
The ribonuclease P database.
J W Brown
Nucleic Acids Res. 1998 January 1; 26(1): 351–352.
PMCID: PMC147188
The Eukaryotic Promoter Database EPD.
R Cavin Périer, T Junier, and P Bucher
Nucleic Acids Res. 1998 January 1; 26(1): 353–357.
PMCID: PMC147208
PLACE: a database of plant cis-acting regulatory DNA elements.
K Higo, Y Ugawa, M Iwamoto, and H Higo
Nucleic Acids Res. 1998 January 1; 26(1): 358–359.
PMCID: PMC147199
OOTFD (Object-Oriented Transcription Factors Database): an object-oriented successor to TFD.
D Ghosh
Nucleic Acids Res. 1998 January 1; 26(1): 360–362.
PMCID: PMC147249
Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL.
T Heinemeyer, E Wingender, I Reuter, H Hermjakob, A E Kel, O V Kel, E V Ignatieva, E A Ananko, O A Podkolodnaya, F A Kolpakov, N L Podkolodny, and N A Kolchanov
Nucleic Acids Res. 1998 January 1; 26(1): 362–367.
PMCID: PMC147251
MHCPEP, a database of MHC-binding peptides: update 1997.
V Brusic, G Rudy, and L C Harrison
Nucleic Acids Res. 1998 January 1; 26(1): 368–371.
PMCID: PMC147255
Histone Sequence Database: new histone fold family members.
A D Baxevanis and D Landsman
Nucleic Acids Res. 1998 January 1; 26(1): 372–375.
PMCID: PMC147196
PROMISE: a database of information on prosthetic centres and metal ions in protein active sites.
K N Degtyarenko, A C North, D N Perkins, and J B Findlay
Nucleic Acids Res. 1998 January 1; 26(1): 376–381.
PMCID: PMC147213
PhosphoBase: a database of phosphorylation sites.
N Blom, A Kreegipuu, and S Brunak
Nucleic Acids Res. 1998 January 1; 26(1): 382–386.
PMCID: PMC147210
O-GLYCBASE Version 3.0: a revised database of O-glycosylated proteins.
J E Hansen, O Lund, J Nilsson, K Rapacki, and S Brunak
Nucleic Acids Res. 1998 January 1; 26(1): 387–389.
PMCID: PMC147183
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