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Volume 99(17);  August 20, 2002
Commentary
New technology may reveal mechanisms of radiation resistance in Deinococcus radiodurans
Jan Mrázek
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 10943–10944. Published online 2002 August 12. doi: 10.1073/pnas.182429699.
PMCID: PMC129299
Perspective
How does ATP hydrolysis control actin's associations?
Elena P. Sablin, John F. Dawson, Margaret S. VanLoock, James A. Spudich, Edward H. Egelman, and Robert J. Fletterick
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 10945–10947. Published online 2002 August 7. doi: 10.1073/pnas.152329899.
PMCID: PMC123189
Physical Sciences
Applied Mathematics
Transitions between dynamical states of differing stability in the human brain
Andreas Meyer-Lindenberg, Ulf Ziemann, Göran Hajak, Leonardo Cohen, and Karen Faith Berman
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 10948–10953. Published online 2002 July 31. doi: 10.1073/pnas.162114799.
PMCID: PMC123190
Applied Physical Sciences
DNA detection using water-soluble conjugated polymers and peptide nucleic acid probes
Brent S. Gaylord, Alan J. Heeger, and Guillermo C. Bazan
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 10954–10957. Published online 2002 August 7. doi: 10.1073/pnas.162375999.
PMCID: PMC123191
Chemistry
The reduction potential of nitric oxide (NO) and its importance to NO biochemistry
Michael D. Bartberger, Wei Liu, Eleonora Ford, Katrina M. Miranda, Christopher Switzer, Jon M. Fukuto, Patrick J. Farmer, David A. Wink, and Kendall N. Houk
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 10958–10963. Published online 2002 August 12. doi: 10.1073/pnas.162095599.
PMCID: PMC123192
Hydration at the surface of the protein Monellin: Dynamics with femtosecond resolution
Jorge Peon, Samir Kumar Pal, and Ahmed H. Zewail
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 10964–10969. Published online 2002 August 12. doi: 10.1073/pnas.162366099.
PMCID: PMC123193
From the Cover:
Are Pfiesteria species toxicogenic? Evidence against production of ichthyotoxins by Pfiesteria shumwayae
J. P. Berry, K. S. Reece, K. S. Rein, D. G. Baden, L. W. Haas, W. L. Ribeiro, J. D. Shields, R. V. Snyder, W. K. Vogelbein, and R. E. Gawley
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 10970–10975. Published online 2002 August 5. doi: 10.1073/pnas.172221699.
PMCID: PMC123194
The evolution of multicomponent systems at high pressures: VI. The thermodynamic stability of the hydrogen–carbon system: The genesis of hydrocarbons and the origin of petroleum
J. F. Kenney, Vladimir A. Kutcherov, Nikolai A. Bendeliani, and Vladimir A. Alekseev
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 10976–10981. Published online 2002 August 12. doi: 10.1073/pnas.172376899.
PMCID: PMC123195
Interchain vs. intrachain energy transfer in acceptor-capped conjugated polymers
D. Beljonne, G. Pourtois, C. Silva, E. Hennebicq, L. M. Herz, R. H. Friend, G. D. Scholes, S. Setayesh, K. Müllen, and J. L. Brédas
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 10982–10987. Published online 2002 August 12. doi: 10.1073/pnas.172390999.
PMCID: PMC123196
Mass-independent fractionation of oxygen isotopes during thermal decomposition of carbonates
Martin F. Miller, Ian A. Franchi, Mark H. Thiemens, Teresa L. Jackson, André Brack, Gero Kurat, and Colin T. Pillinger
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 10988–10993. Published online 2002 August 7. doi: 10.1073/pnas.172378499.
PMCID: PMC123197
Engineering
FAST CARS: Engineering a laser spectroscopic technique for rapid identification of bacterial spores
M. O. Scully, G. W. Kattawar, R. P. Lucht, T. Opatrný, H. Pilloff, A. Rebane, A. V. Sokolov, and M. S. Zubairy
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 10994–11001. Published online 2002 August 13. doi: 10.1073/pnas.172290899.
PMCID: PMC123198
Geology
Arizona porphyry copper/hydrothermal deposits II: Crystal structure of ajoite, (K + Na)3Cu20Al3Si29O76(OH)16[center dot]~8H2O
Joseph J. Pluth and Joseph V. Smith
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11002–11005. Published online 2002 August 13. doi: 10.1073/pnas.132391299.
PMCID: PMC123199
Mathematics
From the Cover:
Drops: The collapse of capillary jets
Antonio Cordoba, Diego Cordoba, Charles Fefferman, and Marco A. Fontelos
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11006–11007. Published online 2002 August 9. doi: 10.1073/pnas.152318399.
PMCID: PMC123200
Physics
The evolution of multicomponent systems at high pressures: VI. The thermodynamic stability of the hydrogen–carbon system: The genesis of hydrocarbons and the origin of petroleum
J. F. Kenney, Vladimir A. Kutcherov, Nikolai A. Bendeliani, and Vladimir A. Alekseev
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 10976–10981. Published online 2002 August 12. doi: 10.1073/pnas.172376899.
PMCID: PMC123195
A model for the simultaneous analysis of reflectance spectra and basis factors of Munsell color samples under D65 illumination in three-dimensional Euclidean space
A. Kimball Romney and Tarow Indow
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11543–11546. Published online 2002 August 2. doi: 10.1073/pnas.162368999.
PMCID: PMC123292
Biological Sciences
Anthropology-BS
Y genetic data support the Neolithic demic diffusion model
Lounès Chikhi, Richard A. Nichols, Guido Barbujani, and Mark A. Beaumont
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11008–11013. Published online 2002 August 7. doi: 10.1073/pnas.162158799.
PMCID: PMC123201
Applied Biological Sciences
Imaging cells and extracellular matrix in vivo by using second-harmonic generation and two-photon excited fluorescence
Aikaterini Zoumi, Alvin Yeh, and Bruce J. Tromberg
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11014–11019. Published online 2002 August 12. doi: 10.1073/pnas.172368799.
PMCID: PMC123202
Biochemistry
Addition of a photocrosslinking amino acid to the genetic code of Escherichia coli
Jason W. Chin, Andrew B. Martin, David S. King, Lei Wang, and Peter G. Schultz
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11020–11024. Published online 2002 August 1. doi: 10.1073/pnas.172226299.
PMCID: PMC123203
Caspase 3 activity is required for skeletal muscle differentiation
Pasan Fernando, John F. Kelly, Kim Balazsi, Ruth S. Slack, and Lynn A. Megeney
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11025–11030. Published online 2002 August 12. doi: 10.1073/pnas.162172899.
PMCID: PMC123204
Tyrosine sulfation of CCR5 N-terminal peptide by tyrosylprotein sulfotransferases 1 and 2 follows a discrete pattern and temporal sequence
Christoph Seibert, Martine Cadene, Anthony Sanfiz, Brian T. Chait, and Thomas P. Sakmar
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11031–11036. Published online 2002 August 8. doi: 10.1073/pnas.172380899.
PMCID: PMC123205
ClpAP and ClpXP degrade proteins with tags located in the interior of the primary sequence
Joel R. Hoskins, Katsuhiko Yanagihara, Kiyoshi Mizuuchi, and Sue Wickner
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11037–11042. Published online 2002 August 12. doi: 10.1073/pnas.172378899.
PMCID: PMC123206
Molecular and biochemical characterization of two P450 enzymes in the ecdysteroidogenic pathway of Drosophila melanogaster
James T. Warren, Anna Petryk, Guillermo Marqués, Michael Jarcho, Jean-Philippe Parvy, Chantal Dauphin-Villemant, Michael B. O'Connor, and Lawrence I. Gilbert
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11043–11048. Published online 2002 August 12. doi: 10.1073/pnas.162375799.
PMCID: PMC123207
From the Cover:
Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags
Mary S. Lipton, Ljiljana Paša-Tolić, Gordon A. Anderson, David J. Anderson, Deanna L. Auberry, John R. Battista, Michael J. Daly, Jim Fredrickson, Kim K. Hixson, Heather Kostandarithes, Christophe Masselon, Lye Meng Markillie, Ronald J. Moore, Margaret F. Romine, Yufeng Shen, Eric Stritmatter, Nikola Tolić, Harold R. Udseth, Amudhan Venkateswaran, Kwong-Kwok Wong, Rui Zhao, and Richard D. Smith
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11049–11054. Published online 2002 August 12. doi: 10.1073/pnas.172170199.
PMCID: PMC129300
Interactions between lipids and bacterial reaction centers determined by protein crystallography
A. Camara-Artigas, D. Brune, and J. P. Allen
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11055–11060. Published online 2002 August 7. doi: 10.1073/pnas.162368399.
PMCID: PMC123209
Two distinct modes of RecA action are required for DNA polymerase V-catalyzed translesion synthesis
Phuong Pham, Erica M. Seitz, Sergei Saveliev, Xuan Shen, Roger Woodgate, Michael M. Cox, and Myron F. Goodman
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11061–11066. Published online 2002 August 12. doi: 10.1073/pnas.172197099.
PMCID: PMC123210
NusA-stimulated RNA polymerase pausing and termination participates in the Bacillus subtilis trp operon attenuation mechanism in vitro
Alexander V. Yakhnin and Paul Babitzke
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11067–11072. Published online 2002 August 2. doi: 10.1073/pnas.162373299.
PMCID: PMC123211
A genotyping strategy based on incorporation and cleavage of chemically modified nucleotides
Jia Liu Wolfe, Tomohiko Kawate, David A. Sarracino, Martin Zillmann, Jeffrey Olson, Vincent P. Stanton, Jr., and Gregory L. Verdine
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11073–11078. Published online 2002 August 8. doi: 10.1073/pnas.162346699.
PMCID: PMC123212
Crystal structures of native and thrombin-complexed heparin cofactor II reveal a multistep allosteric mechanism
Trevor P. Baglin, Robin W. Carrell, Frank C. Church, Charles T. Esmon, and James A. Huntington
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11079–11084. Published online 2002 August 8. doi: 10.1073/pnas.162232399.
PMCID: PMC123213
CRINEPT-TROSY NMR reveals p53 core domain bound in an unfolded form to the chaperone Hsp90
Stefan Rüdiger, Stefan M. V. Freund, Dmitry B. Veprintsev, and Alan R. Fersht
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11085–11090. Published online 2002 August 5. doi: 10.1073/pnas.132393699.
PMCID: PMC123214
Oligonucleotide directed misfolding of RNA inhibits Candida albicans group I intron splicing
Jessica L. Childs, Matthew D. Disney, and Douglas H. Turner
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11091–11096. Published online 2002 August 8. doi: 10.1073/pnas.172391199.
PMCID: PMC123215
Closure of the Venus flytrap module of mGlu8 receptor and the activation process: Insights from mutations converting antagonists into agonists
Anne-Sophie Bessis, Philippe Rondard, Florence Gaven, Isabelle Brabet, Nicolas Triballeau, Laurent Prézeau, Francine Acher, and Jean-Philippe Pin
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11097–11102. Published online 2002 July 31. doi: 10.1073/pnas.162138699.
PMCID: PMC123216
Transition to the open state of the TolC periplasmic tunnel entrance
Christian Andersen, Eva Koronakis, Evert Bokma, Jeyanthy Eswaran, Daniel Humphreys, Colin Hughes, and Vassilis Koronakis
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11103–11108. Published online 2002 August 5. doi: 10.1073/pnas.162039399.
PMCID: PMC123217
Dimerization of cotton fiber cellulose synthase catalytic subunits occurs via oxidation of the zinc-binding domains
Isaac Kurek, Yasushi Kawagoe, Deborah Jacob-Wilk, Monika Doblin, and Deborah Delmer
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11109–11114. Published online 2002 August 1. doi: 10.1073/pnas.162077099.
PMCID: PMC123218
Transplanting allosteric control of enzyme activity by protein–protein interactions: Coupling a regulatory site to the conserved catalytic core
Aaron C. Pawlyk and Donald W. Pettigrew
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11115–11120. Published online 2002 August 2. doi: 10.1073/pnas.132393599.
PMCID: PMC123219
tRNA-mediated transcription antitermination in vitro: Codon–anticodon pairing independent of the ribosome
Frank J. Grundy, Wade C. Winkler, and Tina M. Henkin
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11121–11126. Published online 2002 August 6. doi: 10.1073/pnas.162366799.
PMCID: PMC123220
Focusing of nitric oxide mediated nitrosation and oxidative nitrosylation as a consequence of reaction with superoxide
Michael G. Espey, Douglas D. Thomas, Katrina M. Miranda, and David A. Wink
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11127–11132. Published online 2002 August 12. doi: 10.1073/pnas.152157599.
PMCID: PMC123221
A −1 ribosomal frameshift element that requires base pairing across four kilobases suggests a mechanism of regulating ribosome and replicase traffic on a viral RNA
Jennifer K. Barry and W. Allen Miller
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11133–11138. Published online 2002 July 30. doi: 10.1073/pnas.162223099.
PMCID: PMC123222
Profiling protein function with small molecule microarrays
Nicolas Winssinger, Scott Ficarro, Peter G. Schultz, and Jennifer L. Harris
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11139–11144. Published online 2002 August 7. doi: 10.1073/pnas.172286899.
PMCID: PMC123223
Biophysics
Hydration at the surface of the protein Monellin: Dynamics with femtosecond resolution
Jorge Peon, Samir Kumar Pal, and Ahmed H. Zewail
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 10964–10969. Published online 2002 August 12. doi: 10.1073/pnas.162366099.
PMCID: PMC123193
Enzymology below 200 K: The kinetics and thermodynamics of the photochemistry catalyzed by protochlorophyllide oxidoreductase
Derren J. Heyes, Alexander V. Ruban, Helen M. Wilks, and C. Neil Hunter
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11145–11150. Published online 2002 August 12. doi: 10.1073/pnas.182274199.
PMCID: PMC123224
Cosolvent-induced transformation of a death domain tertiary structure
Tsan Xiao, Kevin H. Gardner, and Stephen R. Sprang
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11151–11156. Published online 2002 August 12. doi: 10.1073/pnas.172188399.
PMCID: PMC123225
Toward predicting protein topology: An approach to identifying β hairpins
Xavier de la Cruz, E. Gail Hutchinson, Adrian Shepherd, and Janet M. Thornton
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11157–11162. Published online 2002 August 12. doi: 10.1073/pnas.162376199.
PMCID: PMC123226
Designability of α-helical proteins
Eldon G. Emberly, Ned S. Wingreen, and Chao Tang
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11163–11168. Published online 2002 August 12. doi: 10.1073/pnas.162105999.
PMCID: PMC123227
DNA-dependent divalent cation binding in the nucleosome core particle
Curt A. Davey and Timothy J. Richmond
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11169–11174. Published online 2002 August 8. doi: 10.1073/pnas.172271399.
PMCID: PMC123228
The ensemble folding kinetics of protein G from an all-atom Monte Carlo simulation
Jun Shimada and Eugene I. Shakhnovich
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11175–11180. Published online 2002 August 6. doi: 10.1073/pnas.162268099.
PMCID: PMC123229
Cell Biology
Gene expression during the priming phase of liver regeneration after partial hepatectomy in mice
Andrew I. Su, Luca G. Guidotti, John Paul Pezacki, Francis V. Chisari, and Peter G. Schultz
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11181–11186. Published online 2002 August 12. doi: 10.1073/pnas.122359899.
PMCID: PMC123230
Inducible expression of FGF-3 in mouse mammary gland
Elly S. W. Ngan, Zhi-Qing Ma, Steven S. Chua, Francesco J. DeMayo, and Sophia Y. Tsai
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11187–11192. Published online 2002 August 8. doi: 10.1073/pnas.172366199.
PMCID: PMC123231
Mechanism of caveolin filament assembly
Imma Fernandez, Yunshu Ying, Joseph Albanesi, and Richard G. W. Anderson
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11193–11198. Published online 2002 August 7. doi: 10.1073/pnas.172196599.
PMCID: PMC123232
A nuclear export signal within the high mobility group domain regulates the nucleocytoplasmic translocation of SOX9 during sexual determination
Stéphan Gasca, Joaquin Cañizares, Pascal de Santa Barbara, Catherine Méjean, Francis Poulat, Philippe Berta, and Brigitte Boizet-Bonhoure
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11199–11204. Published online 2002 August 8. doi: 10.1073/pnas.172383099.
PMCID: PMC123233
From the Cover:
Angiopoietin-2 displays VEGF-dependent modulation of capillary structure and endothelial cell survival in vivo
Ivan B. Lobov, Peter C. Brooks, and Richard A. Lang
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11205–11210. Published online 2002 August 5. doi: 10.1073/pnas.172161899.
PMCID: PMC123234
Lack of acrosome formation in mice lacking a Golgi protein, GOPC
Ryoji Yao, Chizuru Ito, Yasuko Natsume, Yoshinobu Sugitani, Hitomi Yamanaka, Shoji Kuretake, Kaoru Yanagida, Akira Sato, Kiyotaka Toshimori, and Tetsuo Noda
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11211–11216. Published online 2002 July 30. doi: 10.1073/pnas.162027899.
PMCID: PMC123235
Developmental Biology
The anaphase promoting complex/cyclosome is required during development for modified cell cycles
Helena Kashevsky, Julie A. Wallace, Bruce H. Reed, Cary Lai, Aki Hayashi-Hagihara, and Terry L. Orr-Weaver
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11217–11222. Published online 2002 August 8. doi: 10.1073/pnas.172391099.
PMCID: PMC123236
Ecology
From the Cover:
Are Pfiesteria species toxicogenic? Evidence against production of ichthyotoxins by Pfiesteria shumwayae
J. P. Berry, K. S. Reece, K. S. Rein, D. G. Baden, L. W. Haas, W. L. Ribeiro, J. D. Shields, R. V. Snyder, W. K. Vogelbein, and R. E. Gawley
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 10970–10975. Published online 2002 August 5. doi: 10.1073/pnas.172221699.
PMCID: PMC123194
Disarming the mustard oil bomb
Andreas Ratzka, Heiko Vogel, Daniel J. Kliebenstein, Thomas Mitchell-Olds, and Juergen Kroymann
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11223–11228. Published online 2002 August 2. doi: 10.1073/pnas.172112899.
PMCID: PMC123237
Extinction rates under nonrandom patterns of habitat loss
Eric W. Seabloom, Andy P. Dobson, and David M. Stoms
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11229–11234. Published online 2002 August 12. doi: 10.1073/pnas.162064899.
PMCID: PMC123238
Adverse effects of acid rain on the distribution of the Wood Thrush Hylocichla mustelina in North America
Ralph S. Hames, Kenneth V. Rosenberg, James D. Lowe, Sara E. Barker, and André A. Dhondt
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11235–11240. Published online 2002 August 12. doi: 10.1073/pnas.172700199.
PMCID: PMC123239
Biodiversity, population regulation, and the stability of coral-reef fish communities
Mark H. Carr, Todd W. Anderson, and Mark A. Hixon
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11241–11245. Published online 2002 August 12. doi: 10.1073/pnas.162653499.
PMCID: PMC123240
Evolution
A phylogenetic analysis of myosin heavy chain type II sequences corroborates that Acoela and Nemertodermatida are basal bilaterians
I. Ruiz-Trillo, J. Paps, M. Loukota, C. Ribera, U. Jondelius, J. Baguñà, and M. Riutort
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11246–11251. Published online 2002 August 12. doi: 10.1073/pnas.172390199.
PMCID: PMC123241
Reconsidering the null hypothesis: Is maternal rank associated with birth sex ratios in primate groups?
Gillian R. Brown and Joan B. Silk
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11252–11255. Published online 2002 August 12. doi: 10.1073/pnas.162360599.
PMCID: PMC123242
Hybrid Tamarix widespread in U.S. invasion and undetected in native Asian range
John F. Gaskin and Barbara A. Schaal
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11256–11259. Published online 2002 August 12. doi: 10.1073/pnas.132403299.
PMCID: PMC123243
MHC heterozygosity confers a selective advantage against multiple-strain infections
Dustin J. Penn, Kristy Damjanovich, and Wayne K. Potts
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11260–11264. Published online 2002 August 12. doi: 10.1073/pnas.162006499.
PMCID: PMC123244
Genealogical evidence for epidemics of selfish genes
Pär K. Ingvarsson and Douglas R. Taylor
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11265–11269. Published online 2002 August 12. doi: 10.1073/pnas.172318099.
PMCID: PMC123245
Genetic variation for disease resistance and tolerance among Arabidopsis thaliana accessions
Paula X. Kover and Barbara A. Schaal
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11270–11274. Published online 2002 August 9. doi: 10.1073/pnas.102288999.
PMCID: PMC123246
The chloroplast and mitochondrial genome sequences of the charophyte Chaetosphaeridium globosum: Insights into the timing of the events that restructured organelle DNAs within the green algal lineage that led to land plants
Monique Turmel, Christian Otis, and Claude Lemieux
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11275–11280. Published online 2002 August 2. doi: 10.1073/pnas.162203299.
PMCID: PMC123247
Genetics
An improved genetic model generates high-resolution mapping of QTL for protein quality in maize endosperm
Rongling Wu, Xiang-Yang Lou, Chang-Xing Ma, Xuelu Wang, Brian A. Larkins, and George Casella
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11281–11286. Published online 2002 August 12. doi: 10.1073/pnas.112345699.
PMCID: PMC123248
An anatomy of normal and malignant gene expression
Kathy Boon, Elisson C. Osório, Susan F. Greenhut, Carl F. Schaefer, Jennifer Shoemaker, Kornelia Polyak, Patrice J. Morin, Kenneth H. Buetow, Robert L. Strausberg, Sandro J. de Souza, and Gregory J. Riggins
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11287–11292. Published online 2002 July 15. doi: 10.1073/pnas.152324199.
PMCID: PMC123249
Identification of oncogenes collaborating with p27Kip1 loss by insertional mutagenesis and high-throughput insertion site analysis
Harry C. Hwang, Carla P. Martins, Yvon Bronkhorst, Erin Randel, Anton Berns, Matthew Fero, and Bruce E. Clurman
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11293–11298. Published online 2002 July 31. doi: 10.1073/pnas.162356099.
PMCID: PMC123250
Multiple genetic loci modify susceptibility to plasmacytoma-related morbidity in Eμ-v-abl transgenic mice
R. C. Andrew Symons, Mark J. Daly, Jane Fridlyand, Terence P. Speed, Wendy D. Cook, Steven Gerondakis, Alan W. Harris, and Simon J. Foote
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11299–11304. Published online 2002 July 30. doi: 10.1073/pnas.162566999.
PMCID: PMC123251
Chk2 regulates irradiation-induced, p53-mediated apoptosis in Drosophila
Malte Peters, Carmela DeLuca, Atsushi Hirao, Vuk Stambolic, Julia Potter, Lily Zhou, Jennifer Liepa, Bryan Snow, Sudha Arya, Jorge Wong, Denis Bouchard, Richard Binari, Armen S. Manoukian, and Tak W. Mak
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11305–11310. Published online 2002 August 9. doi: 10.1073/pnas.172382899.
PMCID: PMC123252
A nonsense mutation in the gene encoding 2′-5′-oligoadenylate synthetase/L1 isoform is associated with West Nile virus susceptibility in laboratory mice
Tomoji Mashimo, Marianne Lucas, Dominique Simon-Chazottes, Marie-Pascale Frenkiel, Xavier Montagutelli, Pierre-Emmanuel Ceccaldi, Vincent Deubel, Jean-Louis Guénet, and Philippe Desprès
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11311–11316. Published online 2002 August 19. doi: 10.1073/pnas.172195399.
PMCID: PMC123253
Mismatch-targeted transposition of Mu: A new strategy to map genetic polymorphism
Katsuhiko Yanagihara and Kiyoshi Mizuuchi
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11317–11321. Published online 2002 August 12. doi: 10.1073/pnas.132403399.
PMCID: PMC123254
Immunology
Disruption of pre-TCR expression accelerates lymphomagenesis in E2A-deficient mice
Isaac Engel and Cornelis Murre
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11322–11327. Published online 2002 August 9. doi: 10.1073/pnas.162373999.
PMCID: PMC123255
Identification of HLA-E-specific alloreactive T lymphocytes: A cell subset that undergoes preferential expansion in mixed lymphocyte culture and displays a broad cytolytic activity against allogeneic cells
Chiara Romagnani, Gabriella Pietra, Michela Falco, Enrico Millo, Paola Mazzarino, Roberto Biassoni, Alessandro Moretta, Lorenzo Moretta, and Maria Cristina Mingari
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11328–11333. Published online 2002 August 7. doi: 10.1073/pnas.172369799.
PMCID: PMC123256
Deletion of immunoglobulin β in developing B cells leads to cell death
Eric Meffre and Michel C. Nussenzweig
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11334–11339. Published online 2002 August 6. doi: 10.1073/pnas.172369999.
PMCID: PMC123257
IL-18 contributes to the spontaneous development of atopic dermatitis-like inflammatory skin lesion independently of IgE/stat6 under specific pathogen-free conditions
Hiroshi Konishi, Hiroko Tsutsui, Takaaki Murakami, Shizue Yumikura-Futatsugi, Kei-ichi Yamanaka, Minoru Tanaka, Yohichiro Iwakura, Noboru Suzuki, Kiyoshi Takeda, Shizuo Akira, Kenji Nakanishi, and Hitoshi Mizutani
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11340–11345. Published online 2002 July 31. doi: 10.1073/pnas.152337799.
PMCID: PMC123258
Potent neutralization of botulinum neurotoxin by recombinant oligoclonal antibody
A. Nowakowski, C. Wang, D. B. Powers, P. Amersdorfer, T. J. Smith, V. A. Montgomery, R. Sheridan, R. Blake, L. A. Smith, and J. D. Marks
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11346–11350. Published online 2002 August 12. doi: 10.1073/pnas.172229899.
PMCID: PMC123259
Wiskott–Aldrich syndrome protein is required for NK cell cytotoxicity and colocalizes with actin to NK cell-activating immunologic synapses
Jordan S. Orange, Narayanaswamy Ramesh, Eileen Remold-O'Donnell, Yoji Sasahara, Louise Koopman, Michael Byrne, Francisco A. Bonilla, Fred S. Rosen, Raif S. Geha, and Jack L. Strominger
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11351–11356. Published online 2002 August 12. doi: 10.1073/pnas.162376099.
PMCID: PMC123260
Medical Sciences
PTP1B antisense oligonucleotide lowers PTP1B protein, normalizes blood glucose, and improves insulin sensitivity in diabetic mice
Bradley A. Zinker, Cristina M. Rondinone, James M. Trevillyan, Rebecca J. Gum, Jill E. Clampit, Jeffrey F. Waring, Nancy Xie, Denise Wilcox, Peer Jacobson, Leigh Frost, Paul E. Kroeger, Regina M. Reilly, Sandra Koterski, Terry J. Opgenorth, Roger G. Ulrich, Seth Crosby, Madeline Butler, Susan F. Murray, Robert A. McKay, Sanjay Bhanot, Brett P. Monia, and Michael R. Jirousek
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11357–11362. Published online 2002 August 8. doi: 10.1073/pnas.142298199.
PMCID: PMC123261
Inhibition of calcineurin-NFAT hypertrophy signaling by cGMP-dependent protein kinase type I in cardiac myocytes
Beate Fiedler, Suzanne M. Lohmann, Albert Smolenski, Stephan Linnemüller, Burkert Pieske, Frank Schröder, Jeffery D. Molkentin, Helmut Drexler, and Kai C. Wollert
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11363–11368. Published online 2002 August 12. doi: 10.1073/pnas.162100799.
PMCID: PMC123262
High-resolution mapping of the 11q13 amplicon and identification of a gene, TAOS1, that is amplified and overexpressed in oral cancer cells
Xin Huang, Susanne M. Gollin, Siva Raja, and Tony E. Godfrey
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11369–11374. Published online 2002 August 9. doi: 10.1073/pnas.172285799.
PMCID: PMC123263
Defects in caveolin-1 cause dilated cardiomyopathy and pulmonary hypertension in knockout mice
You-Yang Zhao, Yang Liu, Radu-Virgil Stan, Lian Fan, Yusu Gu, Nancy Dalton, Po-Hsien Chu, Kirk Peterson, John Ross, Jr., and Kenneth R. Chien
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11375–11380. Published online 2002 August 12. doi: 10.1073/pnas.172360799.
PMCID: PMC123264
A role for the melanocortin 4 receptor in sexual function
Lex H. T. Van der Ploeg, William J. Martin, Andrew D. Howard, Ravi P. Nargund, Christopher P. Austin, Xiaoming Guan, Jennifer Drisko, Doreen Cashen, Iyassu Sebhat, Arthur A. Patchett, David J. Figueroa, Anthony G. DiLella, Brett M. Connolly, David H. Weinberg, Carina P. Tan, Oksana C. Palyha, Sheng-Shung Pong, Tanya MacNeil, Charles Rosenblum, Aurawan Vongs, Rui Tang, Hong Yu, Andreas W. Sailer, Tung Ming Fong, Cathy Huang, Michael R. Tota, Ray S. Chang, Ralph Stearns, Constantin Tamvakopoulos, George Christ, Deborah L. Drazen, Brian D. Spar, Randy J. Nelson, and D. Euan MacIntyre
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11381–11386. Published online 2002 August 9. doi: 10.1073/pnas.172378699.
PMCID: PMC123265
The gene expression fingerprint of human heart failure
Fen-Lai Tan, Christine S. Moravec, Jianbo Li, Carolyn Apperson-Hansen, Patrick M. McCarthy, James B. Young, and Meredith Bond
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11387–11392. Published online 2002 August 12. doi: 10.1073/pnas.162370099.
PMCID: PMC123266
VEGF-Trap: A VEGF blocker with potent antitumor effects
Jocelyn Holash, Sam Davis, Nick Papadopoulos, Susan D. Croll, Lillian Ho, Michelle Russell, Patricia Boland, Ray Leidich, Donna Hylton, Elena Burova, Ella Ioffe, Tammy Huang, Czeslaw Radziejewski, Kevin Bailey, James P. Fandl, Tom Daly, Stanley J. Wiegand, George D. Yancopoulos, and John S. Rudge
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11393–11398. Published online 2002 August 12. doi: 10.1073/pnas.172398299.
PMCID: PMC123267
Potent VEGF blockade causes regression of coopted vessels in a model of neuroblastoma
Eugene S. Kim, Anna Serur, Jianzhong Huang, Christina A. Manley, Kimberly W. McCrudden, Jason S. Frischer, Samuel Z. Soffer, Laurence Ring, Tamara New, Stephanie Zabski, John S. Rudge, Jocelyn Holash, George D. Yancopoulos, Jessica J. Kandel, and Darrell J. Yamashiro
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11399–11404. Published online 2002 August 12. doi: 10.1073/pnas.172398399.
PMCID: PMC123268
Microbiology
Detergent extraction identifies different VirB protein subassemblies of the type IV secretion machinery in the membranes of Agrobacterium tumefaciens
Lilian Krall, Urs Wiedemann, Gabriele Unsin, Sabine Weiss, Natalie Domke, and Christian Baron
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11405–11410. Published online 2002 August 12. doi: 10.1073/pnas.172390699.
PMCID: PMC123269
Rescue of influenza B virus from eight plasmids
Erich Hoffmann, Kutubuddin Mahmood, Chin-Fen Yang, Robert G. Webster, Harry B. Greenberg, and George Kemble
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11411–11416. Published online 2002 August 9. doi: 10.1073/pnas.172393399.
PMCID: PMC123270
Peptide linkage mapping of the Agrobacterium tumefaciens vir-encoded type IV secretion system reveals protein subassemblies
Doyle V. Ward, Olga Draper, John R. Zupan, and Patricia C. Zambryski
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11493–11500. Published online 2002 August 12. doi: 10.1073/pnas.172390299.
PMCID: PMC123284
Neurobiology
Transitions between dynamical states of differing stability in the human brain
Andreas Meyer-Lindenberg, Ulf Ziemann, Göran Hajak, Leonardo Cohen, and Karen Faith Berman
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 10948–10953. Published online 2002 July 31. doi: 10.1073/pnas.162114799.
PMCID: PMC123190
Glutamatergic activity in the amygdala signals visceral input during taste memory formation
María Isabel Miranda, Guillaume Ferreira, Leticia Ramírez-Lugo, and Federico Bermúdez-Rattoni
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11417–11422. Published online 2002 August 7. doi: 10.1073/pnas.182200499.
PMCID: PMC123271
Identification of G protein-coupled receptors for Drosophila PRXamide peptides, CCAP, corazonin, and AKH supports a theory of ligand-receptor coevolution
Yoonseong Park, Young-Joon Kim, and Michael E. Adams
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11423–11428. Published online 2002 August 12. doi: 10.1073/pnas.162276199.
PMCID: PMC123272
Massive cross-modal cortical plasticity and the emergence of a new cortical area in developmentally blind mammals
Dianna M. Kahn and Leah Krubitzer
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11429–11434. Published online 2002 August 5. doi: 10.1073/pnas.162342799.
PMCID: PMC123273
CREB activity in the nucleus accumbens shell controls gating of behavioral responses to emotional stimuli
Michel Barrot, Jocelien D. A. Olivier, Linda I. Perrotti, Ralph J. DiLeone, Olivier Berton, Amelia J. Eisch, Soren Impey, Daniel R. Storm, Rachael L. Neve, Jerry C. Yin, Venetia Zachariou, and Eric J. Nestler
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11435–11440. Published online 2002 August 6. doi: 10.1073/pnas.172091899.
PMCID: PMC123274
Stepwise contribution of each subunit to the cooperative activation of BK channels by Ca2+
Xiaowei Niu and Karl L. Magleby
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11441–11446. Published online 2002 August 2. doi: 10.1073/pnas.172254699.
PMCID: PMC123275
Dissociable prefrontal brain systems for attention and emotion
Hiroshi Yamasaki, Kevin S. LaBar, and Gregory McCarthy
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11447–11451. Published online 2002 August 12. doi: 10.1073/pnas.182176499.
PMCID: PMC123276
Deletion of the M5 muscarinic acetylcholine receptor attenuates morphine reinforcement and withdrawal but not morphine analgesia
Anthony S. Basile, Irina Fedorova, Agustin Zapata, Xiaoguang Liu, Toni Shippenberg, Alokesh Duttaroy, Masahisa Yamada, and Jürgen Wess
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11452–11457. Published online 2002 August 1. doi: 10.1073/pnas.162371899.
PMCID: PMC123277
Neural processing of emotional faces requires attention
L. Pessoa, M. McKenna, E. Gutierrez, and L. G. Ungerleider
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11458–11463. Published online 2002 August 12. doi: 10.1073/pnas.172403899.
PMCID: PMC123278
Newly generated neurons in the amygdala and adjoining cortex of adult primates
Patrick J. Bernier, Andréanne Bédard, Jonathan Vinet, Martin Lévesque, and André Parent
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11464–11469. Published online 2002 August 12. doi: 10.1073/pnas.172403999.
PMCID: PMC123279
Physiology
Targeted disruption of the mouse NHERF-1 gene promotes internalization of proximal tubule sodium-phosphate cotransporter type IIa and renal phosphate wasting
S. Shenolikar, J. W. Voltz, C. M. Minkoff, J. B. Wade, and E. J. Weinman
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11470–11475. Published online 2002 August 8. doi: 10.1073/pnas.162232699.
PMCID: PMC123280
Phospholemman (FXYD1) associates with Na,K-ATPase and regulates its transport properties
Gilles Crambert, Maria Füzesi, Haim Garty, Steven Karlish, and Käthi Geering
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11476–11481. Published online 2002 August 8. doi: 10.1073/pnas.182267299.
PMCID: PMC123281
Loss of stearoyl–CoA desaturase-1 function protects mice against adiposity
James M. Ntambi, Makoto Miyazaki, Jonathan P. Stoehr, Hong Lan, Christina M. Kendziorski, Brian S. Yandell, Yang Song, Paul Cohen, Jeffrey M. Friedman, and Alan D. Attie
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11482–11486. Published online 2002 August 12. doi: 10.1073/pnas.132384699.
PMCID: PMC123282
Plant Biology
Integral membrane proteins of the chloroplast envelope: Identification and subcellular localization of new transporters
Myriam Ferro, Daniel Salvi, Hélène Rivière-Rolland, Thierry Vermat, Daphné Seigneurin-Berny, Didier Grunwald, Jérôme Garin, Jacques Joyard, and Norbert Rolland
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11487–11492. Published online 2002 August 12. doi: 10.1073/pnas.172390399.
PMCID: PMC123283
Peptide linkage mapping of the Agrobacterium tumefaciens vir-encoded type IV secretion system reveals protein subassemblies
Doyle V. Ward, Olga Draper, John R. Zupan, and Patricia C. Zambryski
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11493–11500. Published online 2002 August 12. doi: 10.1073/pnas.172390299.
PMCID: PMC123284
Cell and chloroplast division requires ARTEMIS
Hrvoje Fulgosi, Lars Gerdes, Sabine Westphal, Christel Glockmann, and Jürgen Soll
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11501–11506. Published online 2002 August 8. doi: 10.1073/pnas.172032599.
PMCID: PMC123285
RNA helicase-like protein as an early regulator of transcription factors for plant chilling and freezing tolerance
Zhizhong Gong, Hojoung Lee, Liming Xiong, André Jagendorf, Becky Stevenson, and Jian-Kang Zhu
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11507–11512. Published online 2002 August 6. doi: 10.1073/pnas.172399299.
PMCID: PMC123286
Identification of unstable transcripts in Arabidopsis by cDNA microarray analysis: Rapid decay is associated with a group of touch- and specific clock-controlled genes
Rodrigo A. Gutiérrez, Rob M. Ewing, J. Michael Cherry, and Pamela J. Green
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11513–11518. Published online 2002 August 7. doi: 10.1073/pnas.152204099.
PMCID: PMC123287
The F-box subunit of the SCF E3 complex is encoded by a diverse superfamily of genes in Arabidopsis
Jennifer M. Gagne, Brian P. Downes, Shin-Han Shiu, Adam M. Durski, and Richard D. Vierstra
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11519–11524. Published online 2002 August 8. doi: 10.1073/pnas.162339999.
PMCID: PMC123288
Population Biology
Signature of balancing selection in Arabidopsis
Dacheng Tian, Hitoshi Araki, Eli Stahl, Joy Bergelson, and Martin Kreitman
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11525–11530. Published online 2002 August 9. doi: 10.1073/pnas.172203599.
PMCID: PMC123289
Social Sciences
Psychology
Selective impairment of reasoning about social exchange in a patient with bilateral limbic system damage
Valerie E. Stone, Leda Cosmides, John Tooby, Neal Kroll, and Robert T. Knight
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11531–11536. Published online 2002 August 12. doi: 10.1073/pnas.122352699.
PMCID: PMC123290
Cross-cultural evidence of cognitive adaptations for social exchange among the Shiwiar of Ecuadorian Amazonia
Lawrence S. Sugiyama, John Tooby, and Leda Cosmides
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11537–11542. Published online 2002 August 12. doi: 10.1073/pnas.122352999.
PMCID: PMC123291
A model for the simultaneous analysis of reflectance spectra and basis factors of Munsell color samples under D65 illumination in three-dimensional Euclidean space
A. Kimball Romney and Tarow Indow
Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11543–11546. Published online 2002 August 2. doi: 10.1073/pnas.162368999.
PMCID: PMC123292
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