| | Articles SURVEY AND SUMMARY: The morph server: a standardized system for analyzing and visualizing macromolecular motions in a database framework Werner G. Krebs and Mark Gerstein PMCID: PMC102811 Characterization of the Saccharomyces cerevisiae cyclic nucleotide phosphodiesterase involved in the metabolism of ADP-ribose 1″,2″-cyclic phosphate Fahd Nasr and Witold Filipowicz PMCID: PMC102830 Degradation of ribosomal RNA precursors by the exosome Christine Allmang, Philip Mitchell, Elisabeth Petfalski, and David Tollervey PMCID: PMC102825 An ATM homologue from Arabidopsis thaliana: complete genomic organisation and expression analysis Valérie Garcia, Marcel Salanoubat, Nathalie Choisne, and Alain Tissier PMCID: PMC102827 Test of intron predictions reveals novel splice sites, alternatively spliced mRNAs and new introns in meiotically regulated genes of yeast Carrie A. Davis, Leslie Grate, Marc Spingola, and Manuel Ares Jr PMCID: PMC102823 Transcriptional repression by the insulator protein CTCF involves histone deacetylases Marcus Lutz, Les J. Burke, Guillermo Barreto, Frauke Goeman, Heiko Greb, Rüdiger Arnold, Holger Schultheiß, Alexander Brehm, Tony Kouzarides, Victor Lobanenkov, and Rainer Renkawitz PMCID: PMC102824 Role of RNA structure in non-homologous recombination between genomic molecules of brome mosaic virus Marek Figlerowicz PMCID: PMC102819 The effect of mutations in the HIV-1 nucleocapsid protein on strand transfer in cell-free reverse transcription reactions Mayla Hsu, Liwei Rong, Hugues de Rocquigny, Bernard P. Roques, and Mark A. Wainberg PMCID: PMC102828 A further investigation and reappraisal of the thio effect in the cleavage reaction catalyzed by a hammerhead ribozyme Koichi Yoshinari and Kazunari Taira PMCID: PMC102831 NMR studies on functional structures of the AU-rich element-binding domains of Hu antigen C Makoto Inoue, Yutaka Muto, Hiroshi Sakamoto, and Shigeyuki Yokoyama PMCID: PMC102815 Design and optimization of effector-activated ribozyme ligases Michael P. Robertson and Andrew D. Ellington PMCID: PMC102822 Hexahydrated magnesium ions bind in the deep major groove and at the outer mouth of A-form nucleic acid duplexes Howard Robinson, Yi-Gui Gao, Ruslan Sanishvili, Andrzej Joachimiak, and Andrew H.-J. Wang PMCID: PMC102818 Differential regulation of gene activity and chromatin structure within the human serpin gene cluster at 14q32.1 in macrophage microcell hybrids Pierre Rollini and R. E. K. Fournier PMCID: PMC102814 The RNA-binding domain of ribosomal protein L11 recognizes an rRNA tertiary structure stabilized by both thiostrepton and magnesium ion Lawrence B. Blyn, Lisa M. Risen, Richard H. Griffey, and David E. Draper PMCID: PMC102817 Mapping of accessible sites for oligonucleotide hybridization on hepatitis delta virus ribozymes Jan Wrzesinski, Micha Legiewicz, and Jerzy Ciesiolka PMCID: PMC102829 Solution structure of the DNA decamer duplex containing a 3′-T·T base pair of the cis–syn cyclobutane pyrimidine dimer: implication for the mutagenic property of the cis–syn dimer Joon-Hwa Lee, Yun-Jeong Choi, and Byong-Seok Choi PMCID: PMC102826 Identification of iron responsive genes by screening cDNA libraries from suppression subtractive hybridization with antisense probes from three iron conditions Zheng Ye and James R. Connor PMCID: PMC102820 Discovering regulatory elements in non-coding sequences by analysis of spaced dyads Jacques van Helden, Alma. F. Rios, and Julio Collado-Vides PMCID: PMC102821 Genomic organization of human GMEB-1 and rat GMEB-2: structural conservation of two multifunctional proteins Huawei Zeng, Sunil Kaul, and S. Stoney Simons PMCID: PMC102812 Determination of the recognition sequence of Mycobacterium smegmatis topoisomerase I on mycobacterial genomic sequences Devanjan Sikder and Valakunja Nagaraja PMCID: PMC102816 The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12 Ernesto Pérez-Rueda and Julio Collado-Vides PMCID: PMC102813 NAR Methods Online A new label technology for the detection of specific polymerase chain reaction products in a closed tube Jussi Nurmi, Alice Ylikoski, Tero Soukka, Matti Karp, and Timo Lövgren PMCID: PMC102832 Advanced method for oligonucleotide deprotection Sergey A. Surzhikov, Edward N. Timofeev, Boris K. Chernov, Julia B. Golova, and Andrei D. Mirzabekov PMCID: PMC102833 Rational design of landmark probes for quantitative DNA fiber mapping (QDFM) Huangpin B. Hsieh, Mei Wang, Robert A. Lersch, Ung-Jin Kim, and Heinz-Ulrich G. Weier PMCID: PMC102834 Mass spectrometry of single-stranded restriction fragments captured by an undigested complementary sequence Norman H. L. Chiu, Kai Tang, Ping Yip, Andreas Braun, Hubert Koster, and Charles R. Cantor PMCID: PMC102835 MethyLight: a high-throughput assay to measure DNA methylation Cindy A. Eads, Kathleen D. Danenberg, Kazuyuki Kawakami, Leonard B. Saltz, Corey Blake, Darryl Shibata, Peter V. Danenberg, and Peter W. Laird PMCID: PMC102836 Oligonucleotide immobilization on micropatterned streptavidin surfaces Chandran R. Sabanayagam, Cassandra L. Smith, and Charles R. Cantor PMCID: PMC102837 Fluorescence resonance energy transfer from pyrene to perylene labels for nucleic acid hybridization assays under homogeneous solution conditions Masayuki Masuko, Shohkichi Ohuchi, Koji Sode, Hiroyuki Ohtani, and Akira Shimadzu PMCID: PMC102838 Multifunctional DNA conjugates for the in vitro selection of new catalysts Felix Hausch and Andres Jäschke PMCID: PMC102839 One tube mutation detection using sensitive fluorescent dyeing of MutS protected DNA Pawe Sachadyn, Anna Stanisawska, and Józef Kur PMCID: PMC102840 Amplifiable DNA from Gram-negative and Gram-positive bacteria by a low strength pulsed electric field method Frank Vitzthum, Georg Geiger, Hans Bisswanger, Bentsian Elkine, Herwig Brunner, and Jürgen Bernhagen PMCID: PMC102841 |
