| | This journal provides immediate access to some articles. In This Issue Proc Natl Acad Sci U S A. 2005 January 25; 102(4): 957–958. doi: 10.1073/iti0405102.PMCID: PMC548644 Commentary Three-pronged genomic analysis reveals yeast cell-type regulation circuitry George F. Sprague, Jr. PMCID: PMC545858 Physical Sciences Chemistry From the Cover:
Planar-to-tubular structural transition in boron clusters: B20 as the embryo of single-walled boron nanotubes Boggavarapu Kiran, Satya Bulusu, Hua-Jin Zhai, Soohaeng Yoo, Xiao Cheng Zeng, and Lai-Sheng Wang PMCID: PMC545846 A fluorescent probe designed for studying protein conformational change Bruce E. Cohen, Arnd Pralle, XiaoJie Yao, Gayathri Swaminath, Chris S. Gandhi, Yuh Nung Jan, Brian K. Kobilka, Ehud Y. Isacoff, and Lily Y. Jan PMCID: PMC545863 Mesoscopic self-organization of a self-assembled supramolecular rectangle on highly oriented pyrolytic graphite and Au(111) surfaces Jian-Ru Gong, Li-Jun Wan, Qun-Hui Yuan, Chun-Li Bai, Hershel Jude, and Peter J. Stang PMCID: PMC545841 Directing cell migration with asymmetric micropatterns Xingyu Jiang, Derek A. Bruzewicz, Amy P. Wong, Matthieu Piel, and George M. Whitesides PMCID: PMC545855 Geology Nanoscale environments associated with bioweathering of a Mg-Fe-pyroxene Karim Benzerara, Tae Hyun Yoon, Nicolas Menguy, Tolek Tyliszczak, and Gordon E. Brown, Jr. PMCID: PMC545861 Biological Sciences Applied Biological Sciences From the Cover:
Metabolizing enzyme toxicology assay chip (MetaChip) for high-throughput microscale toxicity analyses Moo-Yeal Lee, Chan Beum Park, Jonathan S. Dordick, and Douglas S. Clark PMCID: PMC545843 Biochemistry Breaking sieve for steric exclusion of a noncognate amino acid from active site of a tRNA synthetase Manal A. Swairjo and Paul R. Schimmel PMCID: PMC545860 Statistical coevolution analysis and molecular dynamics: Identification of amino acid pairs essential for catalysis R. August Estabrook, Jia Luo, Matthew M. Purdy, Vyas Sharma, Paul Weakliem, Thomas C. Bruice, and Norbert O. Reich PMCID: PMC545822 Human maintenance DNA (cytosine-5)-methyltransferase and p53 modulate expression of p53-repressed promoters Pierre-Olivier Estève, Hang Gyeong Chin, and Sriharsa Pradhan PMCID: PMC544618 α-Lytic protease can exist in two separately stable conformations with different His57 mobilities and catalytic activities Kristin Coffman Haddad, James L. Sudmeier, Daniel A. Bachovchin, and William W. Bachovchin PMCID: PMC545854 Characterization of potential selenium-binding proteins in the selenophosphate synthetase system Yuki Ogasawara, Gerard M. Lacourciere, Kazuyuki Ishii, and Thressa C. Stadtman PMCID: PMC545862 Reconstitution of uridine-deletion precleaved RNA editing with two recombinant enzymes Xuedong Kang, Kestrel Rogers, Guanghan Gao, Arnold M. Falick, Sharleen Zhou, and Larry Simpson PMCID: PMC545852 Altering the interaction between σ70 and RNA polymerase generates complexes with distinct transcription-elongation properties Yvonne Berghöfer-Hochheimer, Chi Zen Lu, and Carol A. Gross PMCID: PMC545856 Biophysics A fluorescent probe designed for studying protein conformational change Bruce E. Cohen, Arnd Pralle, XiaoJie Yao, Gayathri Swaminath, Chris S. Gandhi, Yuh Nung Jan, Brian K. Kobilka, Ehud Y. Isacoff, and Lily Y. Jan PMCID: PMC545863 A partial atomic structure for the flagellar hook of Salmonella typhimurium Tanvir R. Shaikh, Dennis R. Thomas, James Z. Chen, Fadel A. Samatey, Hideyuki Matsunami, Katsumi Imada, Keiichi Namba, and David J. DeRosier PMCID: PMC545859 The protein structure prediction problem could be solved using the current PDB library Yang Zhang and Jeffrey Skolnick PMCID: PMC545829 Probing counterion modulated repulsion and attraction between nucleic acid duplexes in solution Yu Bai, Rhiju Das, Ian S. Millett, Daniel Herschlag, and Sebastian Doniach PMCID: PMC545826 Development and evaluation of a microdevice for amino acid biomarker detection and analysis on Mars Alison M. Skelley, James R. Scherer, Andrew D. Aubrey, William H. Grover, Robin H. C. Ivester, Pascale Ehrenfreund, Frank J. Grunthaner, Jeffrey L. Bada, and Richard A. Mathies PMCID: PMC545824 In vivo modulation of morphogenetic movements in Drosophila embryos with femtosecond laser pulses Willy Supatto, Delphine Débarre, Bruno Moulia, Eric Brouzés, Jean-Louis Martin, Emmanuel Farge, and Emmanuel Beaurepaire PMCID: PMC545833 The N-terminal to C-terminal motif in protein folding and function Mallela M. G. Krishna and S. Walter Englander PMCID: PMC545867 Cell Biology Targeting gene expression selectively in cancer cells by using the progression-elevated gene-3 promoter Zhao-Zhong Su, Devanand Sarkar, Luni Emdad, Gregory J. Duigou, Charles S. H. Young, Joy Ware, Aaron Randolph, Kristoffer Valerie, and Paul B. Fisher PMCID: PMC545837 DNA damage-induced mitotic catastrophe is mediated by the Chk1-dependent mitotic exit DNA damage checkpoint Xingxu Huang, Thanh Tran, Lingna Zhang, Rashieda Hatcher, and Pumin Zhang PMCID: PMC545827 Age-specific incidence of inherited versus sporadic cancers: A test of the multistage theory of carcinogenesis Steven A. Frank PMCID: PMC545832 Developmental Biology Essential role of Flk-1 (VEGF receptor 2) tyrosine residue 1173 in vasculogenesis in mice Yoshiko Sakurai, Kaori Ohgimoto, Yuki Kataoka, Nobuaki Yoshida, and Masabumi Shibuya PMCID: PMC545830 Requirement for serum response factor for skeletal muscle growth and maturation revealed by tissue-specific gene deletion in mice Shijie Li, Michael P. Czubryt, John McAnally, Rhonda Bassel-Duby, James A. Richardson, Franziska F. Wiebel, Alfred Nordheim, and Eric N. Olson PMCID: PMC545866 Ecology Recent biological invasion may hasten invasional meltdown by accelerating historical introductions Edwin D. Grosholz PMCID: PMC545825 Evolution Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae Zhenglong Gu, Lior David, Dmitri Petrov, Ted Jones, Ronald W. Davis, and Lars M. Steinmetz PMCID: PMC545845 Genetics Abelson-interactor-1 promotes WAVE2 membrane translocation and Abelson-mediated tyrosine phosphorylation required for WAVE2 activation Yan Leng, Jinyi Zhang, Karen Badour, Enrico Arpaia, Spencer Freeman, Pam Cheung, Michael Siu, and Katherine Siminovitch PMCID: PMC545868 AML1-ETO and C-KIT mutation/overexpression in t(8;21) leukemia: Implication in stepwise leukemogenesis and response to Gleevec Yue-Ying Wang, Guang-Biao Zhou, Tong Yin, Bing Chen, Jing-Yi Shi, Wen-Xue Liang, Xiao-Long Jin, Jian-Hua You, Guang Yang, Zhi-Xiang Shen, Jue Chen, Shu-Min Xiong, Guo-Qiang Chen, Feng Xu, Yi-Wei Liu, Zhu Chen, and Sai-Juan Chen PMCID: PMC545849 Human Fanconi anemia monoubiquitination pathway promotes homologous DNA repair Koji Nakanishi, Yun-Gui Yang, Andrew J. Pierce, Toshiyasu Taniguchi, Martin Digweed, Alan D. D'Andrea, Zhao-Qi Wang, and Maria Jasin PMCID: PMC545844 Immunology A coreceptor interaction between the CD28 and TNF receptor family members B and T lymphocyte attenuator and herpesvirus entry mediator Lino C. Gonzalez, Kelly M. Loyet, Jill Calemine-Fenaux, Vandana Chauhan, Bernd Wranik, Wenjun Ouyang, and Dan L. Eaton PMCID: PMC544343 Drosophila peptidoglycan recognition protein LC (PGRP-LC) acts as a signal-transducing innate immune receptor Kwang-Min Choe, Hyangkyu Lee, and Kathryn V. Anderson PMCID: PMC545828 Glycolipid presentation to natural killer T cells differs in an organ-dependent fashion John Schmieg, Guangli Yang, Richard W. Franck, Nico Van Rooijen, and Moriya Tsuji PMCID: PMC545847 Medical Sciences Directing oncogenic fusion genes into stem cells via an SCL enhancer Mariko Eguchi, Minenori Eguchi-Ishimae, Anthony Green, Tariq Enver, and Mel Greaves PMCID: PMC545834 Clonal expansion of hepatocytes during chronic woodchuck hepatitis virus infection William S. Mason, Allison R. Jilbert, and Jesse Summers PMCID: PMC544623 From the Cover:
Imaging bacterial infections with radiolabeled 1-(2′-deoxy-2′-fluoro-β-D-arabinofuranosyl)-5-iodouracil Chetan Bettegowda, Catherine A. Foss, Ian Cheong, Yuchuan Wang, Luis Diaz, Nishant Agrawal, James Fox, James Dick, Long H. Dang, Shibin Zhou, Kenneth W. Kinzler, Bert Vogelstein, and Martin G. Pomper PMCID: PMC545851 Mutation of the androgen receptor causes oncogenic transformation of the prostate Guangzhou Han, Grant Buchanan, Michael Ittmann, Jonathan M. Harris, Xiaoqing Yu, Francesco J. DeMayo, Wayne Tilley, and Norman M. Greenberg PMCID: PMC544619 Microbiology Altering the interaction between σ70 and RNA polymerase generates complexes with distinct transcription-elongation properties Yvonne Berghöfer-Hochheimer, Chi Zen Lu, and Carol A. Gross PMCID: PMC545856 Pathogenic hantaviruses bind plexin–semaphorin–integrin domains present at the apex of inactive, bent αvβ3 integrin conformers Tracy Raymond, Elena Gorbunova, Irina N. Gavrilovskaya, and Erich R. Mackow PMCID: PMC545842 EsxA and EsxB are secreted by an ESAT-6-like system that is required for the pathogenesis of Staphylococcus aureus infections Monica L. Burts, Wade A. Williams, Kristin DeBord, and Dominique M. Missiakas PMCID: PMC545836 Expression of a viral polymerase-bound host factor turns human cell lines permissive to a plant- and insect-infecting virus Ricardo B. de Medeiros, Juliana Figueiredo, Renato de O. Resende, and Antonio C. De Avila PMCID: PMC545839 Neuroscience Visual speech speeds up the neural processing of auditory speech Virginie van Wassenhove, Ken W. Grant, and David Poeppel PMCID: PMC545853 A form of DISC1 enriched in nucleus: Altered subcellular distribution in orbitofrontal cortex in psychosis and substance/alcohol abuse Naoya Sawamura, Takako Sawamura-Yamamoto, Yuji Ozeki, Christopher A. Ross, and Akira Sawa PMCID: PMC545838 Loss of perivascular aquaporin 4 may underlie deficient water and K+ homeostasis in the human epileptogenic hippocampus Tore Eid, Tih-Shih W. Lee, Marion J. Thomas, Mahmood Amiry-Moghaddam, Lars P. Bjørnsen, Dennis D. Spencer, Peter Agre, Ole P. Ottersen, and Nihal C. de Lanerolle PMCID: PMC545857 Glutamate regulation of DARPP-32 phosphorylation in neostriatal neurons involves activation of multiple signaling cascades Akinori Nishi, Yasuo Watanabe, Hideho Higashi, Masatoshi Tanaka, Angus C. Nairn, and Paul Greengard PMCID: PMC545831 From the Cover:
Genetic deletion of the Nogo receptor does not reduce neurite inhibition in vitro or promote corticospinal tract regeneration in vivo Binhai Zheng, Jasvinder Atwal, Carole Ho, Lauren Case, Xiao-lin He, K. Christopher Garcia, Oswald Steward, and Marc Tessier-Lavigne PMCID: PMC544342 Gene delivery of human apolipoprotein E alters brain Aβ burden in a mouse model of Alzheimer's disease Jean-Cosme Dodart, Robert A. Marr, Milla Koistinaho, Beth M. Gregersen, Seema Malkani, Inder M. Verma, and Steven M. Paul PMCID: PMC544620 Rhabdomeric phototransduction initiated by the vertebrate photopigment melanopsin Mauro Cesar Isoldi, Mark D. Rollag, Ana Maria de Lauro Castrucci, and Ignacio Provencio PMCID: PMC545850 Melatonin synthesis: 14-3-3-dependent activation and inhibition of arylalkylamine N-acetyltransferase mediated by phosphoserine-205 Surajit Ganguly, Joan L. Weller, Anthony Ho, Philippe Chemineau, Benoit Malpaux, and David C. Klein PMCID: PMC544185 Natural-scene geometry predicts the perception of angles and line orientation Catherine Q. Howe and Dale Purves PMCID: PMC544621 The Müller-Lyer illusion explained by the statistics of image–source relationships Catherine Q. Howe and Dale Purves PMCID: PMC544622 Redefining implicit and explicit memory: The functional neuroanatomy of priming, remembering, and control of retrieval Björn H. Schott, Richard N. Henson, Alan Richardson-Klavehn, Christine Becker, Volker Thoma, Hans-Jochen Heinze, and Emrah Düzel PMCID: PMC545864 Physiology From the Cover:
Insulin-like growth factor-binding protein-1 (IGFBP-1) mediates hypoxia-induced embryonic growth and developmental retardation Shingo Kajimura, Katsumi Aida, and Cunming Duan PMCID: PMC545835 Psychology Anticipating the three-dimensional consequences of eye movements Mark Wexler PMCID: PMC545848 Social Sciences Anticipating the three-dimensional consequences of eye movements Mark Wexler PMCID: PMC545848 Economic Sciences The economics of ideas and intellectual property Michele Boldrin and David K. Levine PMCID: PMC545840 Psychology Redefining implicit and explicit memory: The functional neuroanatomy of priming, remembering, and control of retrieval Björn H. Schott, Richard N. Henson, Alan Richardson-Klavehn, Christine Becker, Volker Thoma, Hans-Jochen Heinze, and Emrah Düzel PMCID: PMC545864 Correction Proc Natl Acad Sci U S A. 2005 January 25; 102(4): 1263. doi: 10.1073/pnas.0409514102.PMCID: PMC545865 Corrects: Shlomo Nedvetzki, et al. RHAMM, a receptor for hyaluronan-mediated motility, compensates for CD44 in inflamed CD44-knockout mice: A different interpretation of redundancy. Proc Natl Acad Sci U S A. 2004 December 28; 101(52): 18081–18086. |
