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Volume 105(23);  June 10, 2008
Letters
Oldest North American primate
Philip D. Gingerich, Kenneth D. Rose, and Thierry Smith
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): E30. doi: 10.1073/pnas.0802296105.
PMCID: PMC2656345
Reply to Gingerich et al.: Oldest North American primate
K. Christopher Beard
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): E31. doi: 10.1073/pnas.0803699105.
PMCID: PMC2656352
Reply to Herz et al. and Humphrey et al.: Genetic heterogeneity of cerebellar hypoplasia with quadrupedal locomotion
Tayfun Ozcelik, Nurten Akarsu, Elif Uz, Safak Caglayan, Suleyman Gulsuner, Onur Emre Onat, Meliha Tan, and Uner Tan
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): E32–E33. doi: 10.1073/pnas.0804078105.
PMCID: PMC2656353
This Week in PNAS
In This Issue
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 7895–7896. doi: 10.1073/iti2308105.
PMCID: PMC2430335
Commentary
Production platforms for the molecular pharming of alkaloid diversity
Joe Chappell
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 7897–7898. doi: 10.1073/pnas.0803930105.
PMCID: PMC2430336
Physical Sciences
Applied Physical Sciences
From the Cover:
Localized and extended deformations of elastic shells
Ashkan Vaziri and L. Mahadevan
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 7913–7918. doi: 10.1073/pnas.0707364105.
PMCID: PMC2430338
Chemistry
Experimental evidence for a link among cupredoxins: Red, blue, and purple copper transformations in nitrous oxide reductase
Masha G. Savelieff, Tiffany D. Wilson, Youssef Elias, Mark J. Nilges, Dewain K. Garner, and Yi Lu
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 7919–7924. doi: 10.1073/pnas.0711316105.
PMCID: PMC2430339
Understanding ligand-based modulation of the Hsp90 molecular chaperone dynamics at atomic resolution
Giorgio Colombo, Giulia Morra, Massimiliano Meli, and Gennady Verkhivker
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 7976–7981. doi: 10.1073/pnas.0802879105.
PMCID: PMC2402385
Geophysics
X-ray Raman scattering study of MgSiO3 glass at high pressure: Implication for triclustered MgSiO3 melt in Earth's mantle
Sung Keun Lee, Jung-Fu Lin, Yong Q. Cai, Nozomu Hiraoka, Peter J. Eng, Takuo Okuchi, Ho-kwang Mao, Yue Meng, Michael Y. Hu, Paul Chow, Jinfu Shu, Baosheng Li, Hiroshi Fukui, Bum Han Lee, Hyun Na Kim, and Choong-Shik Yoo
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 7925–7929. doi: 10.1073/pnas.0802667105.
PMCID: PMC2413174
Physics
Cultural route to the emergence of linguistic categories
Andrea Puglisi, Andrea Baronchelli, and Vittorio Loreto
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 7936–7940. doi: 10.1073/pnas.0802485105.
PMCID: PMC2430341
Biological Sciences
Applied Biological Sciences
From the Cover:
Characterization of the structure–function relationship at the ligament-to-bone interface
Kristen L. Moffat, Wan-Hsuan S. Sun, Paul E. Pena, Nadeen O. Chahine, Stephen B. Doty, Gerard A. Ateshian, Clark T. Hung, and Helen H. Lu
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 7947–7952. doi: 10.1073/pnas.0712150105.
PMCID: PMC2430342
Biochemistry
Evolution of tRNA nucleotidyltransferases: A small deletion generated CC-adding enzymes
Anne Neuenfeldt, Andrea Just, Heike Betat, and Mario Mörl
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 7953–7958. doi: 10.1073/pnas.0801971105.
PMCID: PMC2430343
The coactivators CBP/p300 and the histone chaperone NAP1 promote transcription-independent nucleosome eviction at the HTLV-1 promoter
Neelam Sharma and Jennifer K. Nyborg
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 7959–7963. doi: 10.1073/pnas.0800534105.
PMCID: PMC2430344
Characterization of endogenous human Argonautes and their miRNA partners in RNA silencing
Asuka Azuma-Mukai, Hideo Oguri, Toutai Mituyama, Zhi Rong Qian, Kiyoshi Asai, Haruhiko Siomi, and Mikiko C. Siomi
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 7964–7969. doi: 10.1073/pnas.0800334105.
PMCID: PMC2430345
A voltage-sensing phosphatase, Ci-VSP, which shares sequence identity with PTEN, dephosphorylates phosphatidylinositol 4,5-bisphosphate
Hirohide Iwasaki, Yoshimichi Murata, Youngjun Kim, Md. Israil Hossain, Carolyn A. Worby, Jack E. Dixon, Thomas McCormack, Takehiko Sasaki, and Yasushi Okamura
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 7970–7975. doi: 10.1073/pnas.0803936105.
PMCID: PMC2430346
Biophysics
Understanding ligand-based modulation of the Hsp90 molecular chaperone dynamics at atomic resolution
Giorgio Colombo, Giulia Morra, Massimiliano Meli, and Gennady Verkhivker
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 7976–7981. doi: 10.1073/pnas.0802879105.
PMCID: PMC2402385
Label-free and dynamic detection of biomolecular interactions for high-throughput microarray applications
Emre Özkumur, James W. Needham, David A. Bergstein, Rodrigo Gonzalez, Mario Cabodi, Jonathan M. Gershoni, Bennett B. Goldberg, and M. Selim Ünlü
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 7988–7992. doi: 10.1073/pnas.0711421105.
PMCID: PMC2430348
Barrierless evolution of structure during the submillisecond refolding reaction of a small protein
Kalyan K. Sinha and Jayant B. Udgaonkar
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 7998–8003. doi: 10.1073/pnas.0803193105.
PMCID: PMC2430349
Structure and host-cell interaction of SH1, a membrane-containing, halophilic euryarchaeal virus
Harri T. Jäälinoja, Elina Roine, Pasi Laurinmäki, Hanna M. Kivelä, Dennis H. Bamford, and Sarah J. Butcher
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8008–8013. doi: 10.1073/pnas.0801758105.
PMCID: PMC2430350
Cell Biology
Yeast UCS proteins promote actomyosin interactions and limit myosin turnover in cells
Matthew Lord, Thomas E. Sladewski, and Thomas D. Pollard
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8014–8019. doi: 10.1073/pnas.0802874105.
PMCID: PMC2430351
Endosome fusion induced by diphtheria toxin translocation domain
Antonella Antignani and Richard J. Youle
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8020–8025. doi: 10.1073/pnas.0711707105.
PMCID: PMC2430352
Protein 4.1R-dependent multiprotein complex: New insights into the structural organization of the red blood cell membrane
Marcela Salomao, Xihui Zhang, Yang Yang, Soohee Lee, John H. Hartwig, Joel Anne Chasis, Narla Mohandas, and Xiuli An
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8026–8031. doi: 10.1073/pnas.0803225105.
PMCID: PMC2430353
LRP6 transduces a canonical Wnt signal independently of Axin degradation by inhibiting GSK3's phosphorylation of β-catenin
Christopher S. Cselenyi, Kristin K. Jernigan, Emilios Tahinci, Curtis A. Thorne, Laura A. Lee, and Ethan Lee
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8032–8037. doi: 10.1073/pnas.0803025105.
PMCID: PMC2430354
Evolution
Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli
Zachary D. Blount, Christina Z. Borland, and Richard E. Lenski
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 7899–7906. doi: 10.1073/pnas.0803151105.
PMCID: PMC2430337
Genetics
Acute carbon dioxide avoidance in Caenorhabditis elegans
Elissa A. Hallem and Paul W. Sternberg
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8038–8043. doi: 10.1073/pnas.0707469105.
PMCID: PMC2430355
A carbon dioxide avoidance behavior is integrated with responses to ambient oxygen and food in Caenorhabditis elegans
Andrew Jonathan Bretscher, Karl Emanuel Busch, and Mario de Bono
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8044–8049. doi: 10.1073/pnas.0707607105.
PMCID: PMC2410288
Variation in MAPT is associated with cerebrospinal fluid tau levels in the presence of amyloid-beta deposition
John S. K. Kauwe, Carlos Cruchaga, Kevin Mayo, Chiara Fenoglio, Sarah Bertelsen, Petra Nowotny, Daniela Galimberti, Elio Scarpini, John C. Morris, Anne M. Fagan, David M. Holtzman, and Alison M. Goate
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8050–8054. doi: 10.1073/pnas.0801227105.
PMCID: PMC2430357
The prevalence of folate-remedial MTHFR enzyme variants in humans
Nicholas J. Marini, Jennifer Gin, Janet Ziegle, Kathryn Hunkapiller Keho, David Ginzinger, Dennis A. Gilbert, and Jasper Rine
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8055–8060. doi: 10.1073/pnas.0802813105.
PMCID: PMC2430358
Immunology
From the Cover:
Effective tumor treatment targeting a melanoma/melanocyte-associated antigen triggers severe ocular autoimmunity
Douglas C. Palmer, Chi-Chao Chan, Luca Gattinoni, Claudia Wrzesinski, Chrystal M. Paulos, Christian S. Hinrichs, Daniel J. Powell, Jr., Christopher A. Klebanoff, Steven E. Finkelstein, Robert N. Fariss, Zhiya Yu, Robert B. Nussenblatt, Steven A. Rosenberg, and Nicholas P. Restifo
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8061–8066. doi: 10.1073/pnas.0710929105.
PMCID: PMC2409137
ATP is released by monocytes stimulated with pathogen-sensing receptor ligands and induces IL-1β and IL-18 secretion in an autocrine way
Alessandra Piccini, Sonia Carta, Sara Tassi, Denise Lasiglié, Gianluca Fossati, and Anna Rubartelli
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8067–8072. doi: 10.1073/pnas.0709684105.
PMCID: PMC2430360
Medical Sciences
From the Cover:
Mutations in the telomerase component NHP2 cause the premature ageing syndrome dyskeratosis congenita
Tom Vulliamy, Richard Beswick, Michael Kirwan, Anna Marrone, Martin Digweed, Amanda Walne, and Inderjeet Dokal
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8073–8078. doi: 10.1073/pnas.0800042105.
PMCID: PMC2430361
Phosphorylation of MCM3 on Ser-112 regulates its incorporation into the MCM2–7 complex
Douglas I. Lin, Priya Aggarwal, and J. Alan Diehl
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8079–8084. doi: 10.1073/pnas.0800077105.
PMCID: PMC2430362
Interleukin-18, together with interleukin-12, induces severe acute pancreatitis in obese but not in nonobese leptin-deficient mice
Joseph A. Sennello, Raja Fayad, Maria Pini, Melissa E. Gove, Venkatesh Ponemone, Robert J. Cabay, Britta Siegmund, Charles A. Dinarello, and Giamila Fantuzzi
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8085–8090. doi: 10.1073/pnas.0804091105.
PMCID: PMC2430363
Microbiology
Delayed antiviral plus immunomodulator treatment still reduces mortality in mice infected by high inoculum of influenza A/H5N1 virus
Bo-Jian Zheng, Kwok-Wah Chan, Yong-Ping Lin, Guang-Yu Zhao, Chris Chan, Hao-Jie Zhang, Hong-Lin Chen, Samson S. Y. Wong, Susanna K. P. Lau, Patrick C. Y. Woo, Kwok-Hung Chan, Dong-Yan Jin, and Kwok-Yung Yuen
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8091–8096. doi: 10.1073/pnas.0711942105.
PMCID: PMC2430364
From the Cover:
Experimental evidence for negative selection in the evolution of a Yersinia pestis pseudogene
Yi-Cheng Sun, B. Joseph Hinnebusch, and Creg Darby
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8097–8101. doi: 10.1073/pnas.0803525105.
PMCID: PMC2430365
A korarchaeal genome reveals insights into the evolution of the Archaea
James G. Elkins, Mircea Podar, David E. Graham, Kira S. Makarova, Yuri Wolf, Lennart Randau, Brian P. Hedlund, Céline Brochier-Armanet, Victor Kunin, Iain Anderson, Alla Lapidus, Eugene Goltsman, Kerrie Barry, Eugene V. Koonin, Phil Hugenholtz, Nikos Kyrpides, Gerhard Wanner, Paul Richardson, Martin Keller, and Karl O. Stetter
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8102–8107. doi: 10.1073/pnas.0801980105.
PMCID: PMC2430366
Neuroscience
Neural substrates underlying human delay and trace eyeblink conditioning
Dominic T. Cheng, John F. Disterhoft, John M. Power, Deborah A. Ellis, and John E. Desmond
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8108–8113. doi: 10.1073/pnas.0800374105.
PMCID: PMC2430367
GDNF is a fast-acting potent inhibitor of alcohol consumption and relapse
Sebastien Carnicella, Viktor Kharazia, Jerome Jeanblanc, Patricia H. Janak, and Dorit Ron
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8114–8119. doi: 10.1073/pnas.0711755105.
PMCID: PMC2423415
Eyeblink conditioning in 12-day-old rats using pontine stimulation as the conditioned stimulus
Matthew M. Campolattaro and John H. Freeman
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8120–8123. doi: 10.1073/pnas.0712006105.
PMCID: PMC2430369
Functional integration across a gradient of corticostriatal channels controls UP state transitions in the dorsal striatum
Fernando Kasanetz, Luis A. Riquelme, Valeria Della-Maggiore, Patricio O'Donnell, and M. Gustavo Murer
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8124–8129. doi: 10.1073/pnas.0711113105.
PMCID: PMC2430370
The tactile integration of local motion cues is analogous to its visual counterpart
Y. C. Pei, S. S. Hsiao, and S. J. Bensmaia
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8130–8135. doi: 10.1073/pnas.0800028105.
PMCID: PMC2430371
Plexin signaling selectively regulates the stereotyped pruning of corticospinal axons from visual cortex
Lawrence K. Low, Xiao-Bo Liu, Regina L. Faulkner, Jeffrey Coble, and Hwai-Jong Cheng
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8136–8141. doi: 10.1073/pnas.0803849105.
PMCID: PMC2430372
Metaplastic control of the endocannabinoid system at inhibitory synapses in hippocampus
David A. Edwards, Longhua Zhang, and Bradley E. Alger
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8142–8147. doi: 10.1073/pnas.0803558105.
PMCID: PMC2409138
Physiology
Predisposition to late-onset obesity in GIRK4 knockout mice
Cydne A. Perry, Marco Pravetoni, Jennifer A. Teske, Carolina Aguado, Darin J. Erickson, Juan F. Medrano, Rafael Luján, Catherine M. Kotz, and Kevin Wickman
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8148–8153. doi: 10.1073/pnas.0803261105.
PMCID: PMC2430374
Calmodulin-dependent gating of Cav1.2 calcium channels in the absence of Cavβ subunits
Arippa Ravindran, Qi Zong Lao, Jo Beth Harry, Parwiz Abrahimi, Evgeny Kobrinsky, and Nikolai M. Soldatov
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8154–8159. doi: 10.1073/pnas.0711624105.
PMCID: PMC2430375
Social Sciences
Psychology
Neural substrates underlying human delay and trace eyeblink conditioning
Dominic T. Cheng, John F. Disterhoft, John M. Power, Deborah A. Ellis, and John E. Desmond
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8108–8113. doi: 10.1073/pnas.0800374105.
PMCID: PMC2430367
Social Sciences
Cultural route to the emergence of linguistic categories
Andrea Puglisi, Andrea Baronchelli, and Vittorio Loreto
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 7936–7940. doi: 10.1073/pnas.0802485105.
PMCID: PMC2430341
Corrections
Correction for Jarvis et al., A global perspective of the richness and evenness of traditional crop-variety diversity maintained by farming communities
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8160. doi: 10.1073/pnas.0803431105.
PMCID: PMC2430376
Corrects: Devra I. Jarvis, et al. From the Cover:
A global perspective of the richness and evenness of traditional crop-variety diversity maintained by farming communities.
Proc Natl Acad Sci U S A. 2008 April 8; 105(14): 5326–5331.
Correction for Mossman, Profile of Hans Joachim Schellnhuber
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8160. doi: 10.1073/pnas.0803065105.
PMCID: PMC2430377
Corrects: Kaspar Mossman. Profile of Hans Joachim Schellnhuber. Proc Natl Acad Sci U S A. 2008 February 12; 105(6): 1783–1785.
Correction for Yokoyama et al., The cyclic AMP effector Epac integrates pro- and anti-fibrotic signals
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8160. doi: 10.1073/pnas.0804100105.
PMCID: PMC2430378
Corrects: Utako Yokoyama, et al. The cyclic AMP effector Epac integrates pro- and anti-fibrotic signals. Proc Natl Acad Sci U S A. 2008 April 29; 105(17): 6386–6391.
Correction for Xu et al., The orphan nuclear receptor chicken ovalbumin upstream promoter-transcription factor II is a critical regulator of adipogenesis
Proc Natl Acad Sci U S A. 2008 June 10; 105(23): 8161. doi: 10.1073/pnas.0804101105.
PMCID: PMC2430379
Corrects: Zhao Xu, et al. The orphan nuclear receptor chicken ovalbumin upstream promoter-transcription factor II is a critical regulator of adipogenesis. Proc Natl Acad Sci U S A. 2008 February 19; 105(7): 2421–2426.
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