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Volume 13(8);  August 2007
Reviews
RNA-based regulation of genes of tryptophan synthesis and degradation, in bacteria
Charles Yanofsky
RNA. 2007 August; 13(8): 1141–1154. doi: 10.1261/rna.620507.
PMCID: PMC1924887
The impact of alternative splicing in vivo: Mouse models show the way
Tarik Möröy and Florian Heyd
RNA. 2007 August; 13(8): 1155–1171. doi: 10.1261/rna.554607.
PMCID: PMC1924907
Letters to the Editor
miR-200b mediates post-transcriptional repression of ZFHX1B
Nanna Rønbjerg Christoffersen, Asli Silahtaroglu, Ulf Andersson Ørom, Sakari Kauppinen, and Anders H. Lund
RNA. 2007 August; 13(8): 1172–1178. doi: 10.1261/rna.586807.
PMCID: PMC1924904
Adipocyte differentiation induced using nonspecific siRNA controls in cultured human mesenchymal stem cells
Yunhe Xu, Sayed-Hadi Mirmalek-Sani, Feng Lin, Junlong Zhang, and Richard O.C. Oreffo
RNA. 2007 August; 13(8): 1179–1183. doi: 10.1261/rna.527207.
PMCID: PMC1924906
Bioinformatics
Mamit-tRNA, a database of mammalian mitochondrial tRNA primary and secondary structures
Joern Pütz, Bruno Dupuis, Marie Sissler, and Catherine Florentz
RNA. 2007 August; 13(8): 1184–1190. doi: 10.1261/rna.588407.
PMCID: PMC1924894
Report
Efficiency of a self-aminoacylating ribozyme: Effect of the length and base-composition of its 3′ extension
Jean Lehmann, Amy Reichel, Axel Buguin, and Albert Libchaber
RNA. 2007 August; 13(8): 1191–1197. doi: 10.1261/rna.500907.
PMCID: PMC1924886
Articles
Isolation of microRNA targets by miRNP immunopurification
George Easow, Aurelio A. Teleman, and Stephen M. Cohen
RNA. 2007 August; 13(8): 1198–1204. doi: 10.1261/rna.563707.
PMCID: PMC1924889
Low specificity of metal ion binding in the metal ion core of a folded RNA
Kevin J. Travers, Nathan Boyd, and Daniel Herschlag
RNA. 2007 August; 13(8): 1205–1213. doi: 10.1261/rna.566007.
PMCID: PMC1924890
Repression of α-actinin SM exon splicing by assisted binding of PTB to the polypyrimidine tract
Arianne J. Matlin, Justine Southby, Clare Gooding, and Christopher W.J. Smith
RNA. 2007 August; 13(8): 1214–1223. doi: 10.1261/rna.219607.
PMCID: PMC1924891
Somatodendritic microRNAs identified by laser capture and multiplex RT-PCR
Min-Jeong Kye, Tsunglin Liu, Sasha F. Levy, Nan Lan Xu, Benjamin B. Groves, Richard Bonneau, Kaiqin Lao, and Kenneth S. Kosik
RNA. 2007 August; 13(8): 1224–1234. doi: 10.1261/rna.480407.
PMCID: PMC1924896
The C-terminal domain of T4 RNA ligase 1 confers specificity for tRNA repair
Li Kai Wang, Jayakrishnan Nandakumar, Beate Schwer, and Stewart Shuman
RNA. 2007 August; 13(8): 1235–1244. doi: 10.1261/rna.591807.
PMCID: PMC1924901
A conserved modified wobble nucleoside (mcm5s2U) in lysyl-tRNA is required for viability in yeast
Glenn R. Björk, Bo Huang, Olof P. Persson, and Anders S. Byström
RNA. 2007 August; 13(8): 1245–1255. doi: 10.1261/rna.558707.
PMCID: PMC1924908
A loop–loop interaction and a K-turn motif located in the lysine aptamer domain are important for the riboswitch gene regulation control
Simon Blouin and Daniel A. Lafontaine
RNA. 2007 August; 13(8): 1256–1267. doi: 10.1261/rna.560307.
PMCID: PMC1924893
Transitivity in Arabidopsis can be primed, requires the redundant action of the antiviral Dicer-like 4 and Dicer-like 2, and is compromised by viral-encoded suppressor proteins
Guillaume Moissiard, Eneida Abreu Parizotto, Christophe Himber, and Olivier Voinnet
RNA. 2007 August; 13(8): 1268–1278. doi: 10.1261/rna.541307.
PMCID: PMC1924903
Testing constraints on rRNA bases that make nonsequence-specific contacts with the codon•anticodon complex in the ribosomal A site
Dwayne L. Taliaferro and Philip J. Farabaugh
RNA. 2007 August; 13(8): 1279–1286. doi: 10.1261/rna.552007.
PMCID: PMC1924888
hnRNP I/PTB can antagonize the splicing repressor activity of SRp30c
Caroline Paradis, Philippe Cloutier, Lulzim Shkreta, Johanne Toutant, Klaus Klarskov, and Benoit Chabot
RNA. 2007 August; 13(8): 1287–1300. doi: 10.1261/rna.403607.
PMCID: PMC1924885
Effect of base modifications on structure, thermodynamic stability, and gene silencing activity of short interfering RNA
Katarzyna Sipa, Elzbieta Sochacka, Julia Kazmierczak-Baranska, Maria Maszewska, Magdalena Janicka, Genowefa Nowak, and Barbara Nawrot
RNA. 2007 August; 13(8): 1301–1316. doi: 10.1261/rna.538907.
PMCID: PMC1924902
Using 5′-PTMs to repair mutant β-globin transcripts
Monique N. Kierlin-Duncan and Bruce A. Sullenger
RNA. 2007 August; 13(8): 1317–1327. doi: 10.1261/rna.525607.
PMCID: PMC1924905
NRF IRES activity is mediated by RNA binding protein JKTBP1 and a 14-nt RNA element
Marc René Reboll, André Oumard, Aniko Carla Gazdag, Isabelle Renger, Birgit Ritter, Michael Schwarzer, Hansjoerg Hauser, Monika Wood, Michiyuki Yamada, Klaus Resch, and Mahtab Nourbakhsh
RNA. 2007 August; 13(8): 1328–1340. doi: 10.1261/rna.545407.
PMCID: PMC1924892
HIV-2 RNA dimerization is regulated by intramolecular interactions in vitro
Tayyba T. Baig, Jean-Marc Lanchy, and J. Stephen Lodmell
RNA. 2007 August; 13(8): 1341–1354. doi: 10.1261/rna.483807.
PMCID: PMC1924897
Cold-stress-induced de novo expression of infC and role of IF3 in cold-shock translational bias
Anna Maria Giuliodori, Anna Brandi, Mara Giangrossi, Claudio O. Gualerzi, and Cynthia L. Pon
RNA. 2007 August; 13(8): 1355–1365. doi: 10.1261/rna.455607.
PMCID: PMC1924895
Differential factor requirement to assemble translation initiation complexes at the alternative start codons of foot-and-mouth disease virus RNA
Dmitri E. Andreev, Olga Fernandez-Miragall, Jorge Ramajo, Sergey E. Dmitriev, Ilya M. Terenin, Encarna Martinez-Salas, and Ivan N. Shatsky
RNA. 2007 August; 13(8): 1366–1374. doi: 10.1261/rna.469707.
PMCID: PMC1924898
Method
A more efficient RNAi inducible system for tight regulation of gene expression in mammalian cells and xenograft animals
Jing Zhang, Cuiying Wang, Ning Ke, Josh Bliesath, John Chionis, Qiuchen S. He, Qi-xiang Li, Jon E. Chatterton, Flossie Wong-staal, and Demin Zhou
RNA. 2007 August; 13(8): 1375–1383. doi: 10.1261/rna.520707.
PMCID: PMC1924899
Improved native affinity purification of RNA
Robert T. Batey and Jeffrey S. Kieft
RNA. 2007 August; 13(8): 1384–1389. doi: 10.1261/rna.528007.
PMCID: PMC1924900
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