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Volume 13(3);  March 2007
Bioinformatics
New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA
Dorota Piekna-Przybylska, Wayne A. Decatur, and Maurille J. Fournier
RNA. 2007 March; 13(3): 305–312. doi: 10.1261/rna.373107.
PMCID: PMC1800513
Reports
The imprinted H19 noncoding RNA is a primary microRNA precursor
Xuezhong Cai and Bryan R. Cullen
RNA. 2007 March; 13(3): 313–316. doi: 10.1261/rna.351707.
PMCID: PMC1800509
The role of the S1 domain in exoribonucleolytic activity: Substrate specificity and multimerization
Mónica Amblar, Ana Barbas, Paulino Gomez-Puertas, and Cecília M. Arraiano
RNA. 2007 March; 13(3): 317–327. doi: 10.1261/rna.220407.
PMCID: PMC1800512
Articles
Structure and thermodynamics of a conserved U2 snRNA domain from yeast and human
Dipali G. Sashital, Vincenzo Venditti, Cortney G. Angers, Gabriel Cornilescu, and Samuel E. Butcher
RNA. 2007 March; 13(3): 328–338. doi: 10.1261/rna.418407.
PMCID: PMC1800520
Core requirements of the adenine riboswitch aptamer for ligand binding
Jean-FranÇois Lemay and Daniel A. Lafontaine
RNA. 2007 March; 13(3): 339–350. doi: 10.1261/rna.142007.
PMCID: PMC1800517
NMR structure of stem–loop D from human rhinovirus-14
Stephen J. Headey, He Huang, Jolyon K. Claridge, Giselle A. Soares, Kaushik Dutta, Martin Schwalbe, Daiwen Yang, and Steven M. Pascal
RNA. 2007 March; 13(3): 351–360. doi: 10.1261/rna.313707.
PMCID: PMC1800519
Interaction of yeast RNA-binding proteins Nrd1 and Nab3 with RNA polymerase II terminator elements
Kristina L. Carroll, Rodolfo Ghirlando, Jessica M. Ames, and Jeffry L. Corden
RNA. 2007 March; 13(3): 361–373. doi: 10.1261/rna.338407.
PMCID: PMC1800511
The eIF4G–homolog p97 can activate translation independent of caspase cleavage
Marco Nousch, Victoria Reed, Robert J. Bryson-Richardson, Peter D. Currie, and Thomas Preiss
RNA. 2007 March; 13(3): 374–384. doi: 10.1261/rna.372307.
PMCID: PMC1800516
Comparison of siRNA-induced off-target RNA and protein effects
Lourdes M. Alemán, John Doench, and Phillip A. Sharp
RNA. 2007 March; 13(3): 385–395. doi: 10.1261/rna.352507.
PMCID: PMC1800510
Post-transcriptional modifications in the small subunit ribosomal RNA from Thermotoga maritima, including presence of a novel modified cytidine
Rebecca Guymon, Steven C. Pomerantz, J. Nicholas Ison, Pamela F. Crain, and James A. McCloskey
RNA. 2007 March; 13(3): 396–403. doi: 10.1261/rna.361607.
PMCID: PMC1800508
The 2′-O-methyltransferase responsible for modification of yeast tRNA at position 4
Martha L. Wilkinson, Sharon M. Crary, Jane E. Jackman, Elizabeth J. Grayhack, and Eric M. Phizicky
RNA. 2007 March; 13(3): 404–413. doi: 10.1261/rna.399607.
PMCID: PMC1800514
Method
Isolation of polysome-bound mRNA from solid tissues amenable for RT-PCR and profiling experiments
M. Julieta Del Prete, Rolando Vernal, Helmut Dolznig, Ernst W. Müllner, and Jose A. Garcia-Sanz
RNA. 2007 March; 13(3): 414–421. doi: 10.1261/rna.79407.
PMCID: PMC1800518
Large-scale production of dsRNA and siRNA pools for RNA interference utilizing bacteriophage ϕ6 RNA-dependent RNA polymerase
Antti P. Aalto, L. Peter Sarin, Alberdina A. van Dijk, Mart Saarma, Minna M. Poranen, Urmas Arumäe, and Dennis H. Bamford
RNA. 2007 March; 13(3): 422–429. doi: 10.1261/rna.348307.
PMCID: PMC1800515
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