| | Molecular Biology ZBP1 subcellular localization and association with stress granules is controlled by its Z-DNA binding domains Nikolaus Deigendesch, Friedrich Koch-Nolte, and Stefan Rothenburg PMCID: PMC1636418 Interplay of Fli-I and FLAP1 for regulation of β-catenin dependent transcription Young-Ho Lee and Michael R. Stallcup PMCID: PMC1636430 Multiple pathways regulate intracellular shuttling of MoKA, a co-activator of transcription factor KLF7 Silvia Smaldone and Francesco Ramirez PMCID: PMC1636432 The spatial arrangement of ORC binding modules determines the functionality of replication origins in budding yeast Yung-Tsi Bolon and Anja-Katrin Bielinsky PMCID: PMC1635292 RAD51AP2, a novel vertebrate- and meiotic-specific protein, shares a conserved RAD51-interacting C-terminal domain with RAD51AP1/PIR51 Oleg V. Kovalenko, Claudia Wiese, and David Schild PMCID: PMC1636435 Covalent binding of the natural antimicrobial peptide indolicidin to DNA abasic sites Christophe Marchand, Krzysztof Krajewski, Hsiu-Fang Lee, Smitha Antony, Allison A. Johnson, Ronak Amin, Peter Roller, Mamuka Kvaratskhelia, and Yves Pommier PMCID: PMC1636436 Mechanisms of transcriptional regulation underlying temporal integration of signals Dominique A. Glauser and Werner Schlegel PMCID: PMC1636431 Sequence determinants of breakpoint location during HIV-1 intersubtype recombination Heather A. Baird, Román Galetto, Yong Gao, Etienne Simon-Loriere, Measho Abreha, John Archer, Jun Fan, David L. Robertson, Eric J. Arts, and Matteo Negroni PMCID: PMC1636437 BP1 is a negative modulator of definitive erythropoiesis Marthe-Sandrine Eiymo Mwa Mpollo, Mélissa Beaudoin, Patricia E. Berg, Hugues Beauchemin, Vivette D'Agati, and Marie Trudel PMCID: PMC1636446 Helicase binding to DnaI exposes a cryptic DNA-binding site during helicase loading in Bacillus subtilis Charikleia Ioannou, Patrick M. Schaeffer, Nicholas E. Dixon, and Panos Soultanas PMCID: PMC1636449 Evolution of variants of yeast site-specific recombinase Flp that utilize native genomic sequences as recombination target sites Swetha Bolusani, Chien-Hui Ma, Andrew Paek, Jay H. Konieczka, Makkuni Jayaram, and Yuri Voziyanov PMCID: PMC1635253 Structural and functional analysis of the MutS C-terminal tetramerization domain Laura Manelyte, Claus Urbanke, Luis Giron-Monzon, and Peter Friedhoff PMCID: PMC1636413 Post-transcriptional control of nuclear-encoded cytochrome oxidase subunits in Trypanosoma brucei: evidence for genome-wide conservation of life-cycle stage-specific regulatory elements Matthew Mayho, Katelyn Fenn, Paul Craddy, Susan Crosthwaite, and Keith Matthews PMCID: PMC1636420 A nucleosome assembly protein-like polypeptide binds to chloroplast group II intron RNA in Chlamydomonas reinhardtii Stephanie Glanz, Astrid Bunse, Andrea Wimbert, Carsten Balczun, and Ulrich Kück PMCID: PMC1636423 RNA Controlling the rate of organic reactions: rational design of allosteric Diels-Alderase ribozymes Sergey Amontov and Andres Jäschke PMCID: PMC1636424 The bipartite architecture of the sRNA in an archaeal box C/D complex is a primary determinant of specificity John W. Hardin and Robert T. Batey PMCID: PMC1635284 Immunoprecipitation of spliceosomal RNAs by antisera to galectin-1 and galectin-3 Weizhong Wang, Jung W. Park, John L. Wang, and Ronald J. Patterson PMCID: PMC1636441 An evolutionary ‘intermediate state’ of mitochondrial translation systems found in Trichinella species of parasitic nematodes: co-evolution of tRNA and EF-Tu Masashi Arita, Takuma Suematsu, Arihiro Osanai, Takashi Inaba, Haruo Kamiya, Kiyoshi Kita, Masahiko Sisido, Yoh-ichi Watanabe, and Takashi Ohtsuki PMCID: PMC1636415 Structural Biology NMR solution structure of the major G-quadruplex structure formed in the human BCL2 promoter region Jixun Dai, Ding Chen, Roger A. Jones, Laurence H. Hurley, and Danzhou Yang PMCID: PMC1636422 Solution structure and functional importance of a conserved RNA hairpin of eel LINE UnaL2 Yusuke Nomura, Masaki Kajikawa, Seiki Baba, Shinta Nakazato, Takayuki Imai, Taiichi Sakamoto, Norihiro Okada, and Gota Kawai PMCID: PMC1636434 Genomics Utilising the left-helical conformation of L-DNA for analysing different marker types on a single universal microarray platform Nicole C. Hauser, Rafael Martinez, Anette Jacob, Steffen Rupp, Jörg D. Hoheisel, and Stefan Matysiak PMCID: PMC1636439 Inventory and analysis of the protein subunits of the ribonucleases P and MRP provides further evidence of homology between the yeast and human enzymes Magnus Alm Rosenblad, Marcela Dávila López, Paul Piccinelli, and Tore Samuelsson PMCID: PMC1636426 The proteins encoded by the pogo-like Lemi1 element bind the TIRs and subterminal repeated motifs of the Arabidopsis Emigrant MITE: consequences for the transposition mechanism of MITEs Céline Loot, Néstor Santiago, Alicia Sanz, and Josep M. Casacuberta PMCID: PMC1636448 Methods Online A DNA biochip for on-the-spot multiplexed pathogen identification Siu-Wai Yeung, Thomas Ming-Hung Lee, Hong Cai, and I-Ming Hsing PMCID: PMC1636451 Inducible microRNA expression by an all-in-one episomal vector system Alexey Epanchintsev, Peter Jung, Antje Menssen, and Heiko Hermeking PMCID: PMC1636425 Transduction of human embryonic stem cells by ecotropic retroviral vectors Philipp Koch, Henrike Siemen, Andrea Biegler, Joseph Itskovitz-Eldor, and Oliver Brüstle PMCID: PMC1636442 Capturing genomic signatures of DNA sequence variation using a standard anonymous microarray platform C. H. Cannon, C. S. Kua, E. K. Lobenhofer, and P. Hurban PMCID: PMC1636412 Advancing uracil-excision based cloning towards an ideal technique for cloning PCR fragments Hussam H. Nour-Eldin, Bjarne G. Hansen, Morten H. H. Nørholm, Jacob K. Jensen, and Barbara A. Halkier PMCID: PMC1635280 Nanoliter high throughput quantitative PCR Tom Morrison, James Hurley, Javier Garcia, Karl Yoder, Arrin Katz, Douglas Roberts, Jamie Cho, Tanya Kanigan, Sergey E. Ilyin, Daniel Horowitz, James M. Dixon, and Colin J.H. Brenan PMCID: PMC1635282 Identifying functional gene sets from hierarchically clustered expression data: map of abiotic stress regulated genes in Arabidopsis thaliana Matti Kankainen, Günter Brader, Petri Törönen, E. Tapio Palva, and Liisa Holm PMCID: PMC1636450 3D reconstruction and comparison of shapes of DNA minicircles observed by cryo-electron microscopy Arnaud Amzallag, Cédric Vaillant, Mathews Jacob, Michael Unser, Jan Bednar, Jason D. Kahn, Jacques Dubochet, Andrzej Stasiak, and John H. Maddocks PMCID: PMC1635295 Computational Biology snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome Jian-Hua Yang, Xiao-Chen Zhang, Zhan-Peng Huang, Hui Zhou, Mian-Bo Huang, Shu Zhang, Yue-Qin Chen, and Liang-Hu Qu PMCID: PMC1636440 Recovering motifs from biased genomes: application of signal correction Samiul Hasan and Mark Schreiber PMCID: PMC1636444 Hypothesis: bacterial clamp loader ATPase activation through DNA-dependent repositioning of the catalytic base and of a trans-acting catalytic threonine Andrew F. Neuwald PMCID: PMC1636414 Automated identification of multiple micro-organisms from resequencing DNA microarrays Anthony P. Malanoski, Baochuan Lin, Zheng Wang, Joel M. Schnur, and David A. Stenger PMCID: PMC1636417 Nucleic Acid Enzymes High fidelity of RecA-catalyzed recombination: a watchdog of genetic diversity Dror Sagi, Tsvi Tlusty, and Joel Stavans PMCID: PMC1636419 The different cleavage DNA sequence specificity explains the camptothecin resistance of the human topoisomerase I Glu418Lys mutant Paola Fiorani, Giovanni Chillemi, Carmen Losasso, Silvia Castelli, and Alessandro Desideri PMCID: PMC1636438 Replication fork blockage by transcription factor-DNA complexes in Escherichia coli Bryony T. I. Payne, Ingeborg C. van Knippenberg, Hazel Bell, Sergio R. Filipe, David J. Sherratt, and Peter McGlynn PMCID: PMC1636447 Human RECQ5β helicase promotes strand exchange on synthetic DNA structures resembling a stalled replication fork Radhakrishnan Kanagaraj, Nurten Saydam, Patrick L. Garcia, Lu Zheng, and Pavel Janscak PMCID: PMC1635296 The Methanothermobacter thermautotrophicus ExoIII homologue Mth212 is a DNA uridine endonuclease Jens Georg, Lars Schomacher, James P. J. Chong, Alan I. Majerník, Monika Raabe, Henning Urlaub, Sabine Müller, Elena Ciirdaeva, Wilfried Kramer, and Hans-Joachim Fritz PMCID: PMC1636421 |
