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Volume 103(29);  July 18, 2006
This Week in PNAS
In This Issue
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10825–10826. doi: 10.1073/iti2906103.
PMCID: PMC1544131
Commentaries
Cenozoic insect–plant diversification in the tropics
Donald R. Strong and Michael Sanderson
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10827–10828. Published online 2006 July 10. doi: 10.1073/pnas.0603510103.
PMCID: PMC1544132
LysM receptors recognize friend and foe
Wolfgang Knogge and Dierk Scheel
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10829–10830. Published online 2006 July 10. doi: 10.1073/pnas.0604601103.
PMCID: PMC1544133
Profile
Profile of Rino Rappuoli
Bijal Trivedi
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10831–10833. Published online 2006 July 10. doi: 10.1073/pnas.0604892103.
PMCID: PMC1544134
Physical Sciences
Applied Mathematics
Minimal model of spiky oscillations in NF-κB signaling
Sandeep Krishna, Mogens H. Jensen, and Kim Sneppen
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10840–10845. Published online 2006 July 7. doi: 10.1073/pnas.0604085103.
PMCID: PMC1544135
Utilizing the information content in two-state trajectories
Ophir Flomenbom and Robert J. Silbey
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10907–10910. Published online 2006 July 10. doi: 10.1073/pnas.0604546103.
PMCID: PMC1544147
Applied Physical Sciences
Sub-parts-per-billion level detection of NO2 using room-temperature quantum cascade lasers
Michael Pushkarsky, Alexei Tsekoun, Ilya G. Dunayevskiy, Rowel Go, and C. Kumar N. Patel
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10846–10849. Published online 2006 July 7. doi: 10.1073/pnas.0604238103.
PMCID: PMC1544136
Single molecules of the bacterial actin MreB undergo directed treadmilling motion in Caulobacter crescentus
So Yeon Kim, Zemer Gitai, Anika Kinkhabwala, Lucy Shapiro, and W. E. Moerner
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10929–10934. Published online 2006 July 7. doi: 10.1073/pnas.0604503103.
PMCID: PMC1544151
Chemistry
Shape-persistent macrocyclic aromatic tetrasulfonamides: Molecules with nanosized cavities and their nanotubular assemblies in solid state
Lan He, Yu An, Lihua Yuan, Wen Feng, Minfeng Li, Dechun Zhang, Kazuhiro Yamato, Chong Zheng, Xiao Cheng Zeng, and Bing Gong
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10850–10855. Published online 2006 July 10. doi: 10.1073/pnas.0602912103.
PMCID: PMC1544137
Symmetry breaking in individual plasmonic nanoparticles
Hui Wang, Yanpeng Wu, Britt Lassiter, Colleen L. Nehl, Jason H. Hafner, Peter Nordlander, and Naomi J. Halas
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10856–10860. Published online 2006 July 7. doi: 10.1073/pnas.0604003103.
PMCID: PMC1544138
Geology
The diversification of Paleozoic fire systems and fluctuations in atmospheric oxygen concentration
Andrew C. Scott and Ian J. Glasspool
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10861–10865. Published online 2006 July 10. doi: 10.1073/pnas.0604090103.
PMCID: PMC1544139
Statistics
Cross-species analysis of biological networks by Bayesian alignment
Johannes Berg and Michael Lässig
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10967–10972. Published online 2006 July 11. doi: 10.1073/pnas.0602294103.
PMCID: PMC1544158
Sustainability Science
Prehistoric agricultural depletion of soil nutrients in Hawai'i
A. S. Hartshorn, O. A. Chadwick, P. M. Vitousek, and P. V. Kirch
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 11092–11097. Published online 2006 July 10. doi: 10.1073/pnas.0604594103.
PMCID: PMC1544177
Biological Sciences
Biochemistry
From the Cover:
Functionally diverging molecular quasi-species evolve by crossing two enzymes
Lars O. Emrén, Sanela Kurtovic, Arna Runarsdottir, Anna-Karin Larsson, and Bengt Mannervik
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10866–10870. Published online 2006 July 7. doi: 10.1073/pnas.0604030103.
PMCID: PMC1544140
Mutant LYS2 mRNAs retained and degraded in the nucleus of Saccharomyces cerevisiae
Biswadip Das, Satarupa Das, and Fred Sherman
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10871–10876. Published online 2006 July 10. doi: 10.1073/pnas.0604562103.
PMCID: PMC1544141
Structure of UDP-N-acetylglucosamine acyltransferase with a bound antibacterial pentadecapeptide
Allison H. Williams, Robert M. Immormino, Daniel T. Gewirth, and Christian R. H. Raetz
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10877–10882. Published online 2006 July 11. doi: 10.1073/pnas.0604465103.
PMCID: PMC1544142
WNK1 and OSR1 regulate the Na+, K+, 2Cl cotransporter in HeLa cells
Anthony N. Anselmo, Svetlana Earnest, Wei Chen, Yu-Chi Juang, Sung Chan Kim, Yingming Zhao, and Melanie H. Cobb
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10883–10888. Published online 2006 July 10. doi: 10.1073/pnas.0604607103.
PMCID: PMC1544143
Biophysics
Migration of tumor cells in 3D matrices is governed by matrix stiffness along with cell-matrix adhesion and proteolysis
Muhammad H. Zaman, Linda M. Trapani, Alisha Sieminski, Drew MacKellar, Haiyan Gong, Roger D. Kamm, Alan Wells, Douglas A. Lauffenburger, and Paul Matsudaira
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10889–10894. Published online 2006 July 10. doi: 10.1073/pnas.0604460103.
PMCID: PMC1544144
Hydrogen-bond switching through a radical pair mechanism in a flavin-binding photoreceptor
Magdalena Gauden, Ivo H. M. van Stokkum, Jason M. Key, Daniel Ch. Lührs, Rienk van Grondelle, Peter Hegemann, and John T. M. Kennis
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10895–10900. Published online 2006 July 7. doi: 10.1073/pnas.0600720103.
PMCID: PMC1544145
Relation between native ensembles and experimental structures of proteins
Robert B. Best, Kresten Lindorff-Larsen, Mark A. DePristo, and Michele Vendruscolo
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10901–10906. Published online 2006 July 7. doi: 10.1073/pnas.0511156103.
PMCID: PMC1544146
Utilizing the information content in two-state trajectories
Ophir Flomenbom and Robert J. Silbey
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10907–10910. Published online 2006 July 10. doi: 10.1073/pnas.0604546103.
PMCID: PMC1544147
Cell Biology
Minimal model of spiky oscillations in NF-κB signaling
Sandeep Krishna, Mogens H. Jensen, and Kim Sneppen
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10840–10845. Published online 2006 July 7. doi: 10.1073/pnas.0604085103.
PMCID: PMC1544135
Contacts and cooperation between cells depend on the hormone ouabain
Isabel Larre, Arturo Ponce, Rosana Fiorentino, Liora Shoshani, Rubén G. Contreras, and Marcelino Cereijido
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10911–10916. Published online 2006 July 11. doi: 10.1073/pnas.0604496103.
PMCID: PMC1544148
Ebp1 isoforms distinctively regulate cell survival and differentiation
Zhixue Liu, Jee-Yin Ahn, Xia Liu, and Keqiang Ye
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10917–10922. Published online 2006 July 10. doi: 10.1073/pnas.0602923103.
PMCID: PMC1544149
Monoamine oxidase A and repressor R1 are involved in apoptotic signaling pathway
Xiao-Ming Ou, Kevin Chen, and Jean C. Shih
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10923–10928. Published online 2006 July 7. doi: 10.1073/pnas.0601515103.
PMCID: PMC1544150
Single molecules of the bacterial actin MreB undergo directed treadmilling motion in Caulobacter crescentus
So Yeon Kim, Zemer Gitai, Anika Kinkhabwala, Lucy Shapiro, and W. E. Moerner
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10929–10934. Published online 2006 July 7. doi: 10.1073/pnas.0604503103.
PMCID: PMC1544151
A phospho-signaling pathway controls the localization and activity of a protease complex critical for bacterial cell cycle progression
Antonio A. Iniesta, Patrick T. McGrath, Ann Reisenauer, Harley H. McAdams, and Lucy Shapiro
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10935–10940. Published online 2006 July 7. doi: 10.1073/pnas.0604554103.
PMCID: PMC1544152
Ecology
From the Cover:
Human impacts on the rates of recent, present, and future bird extinctions
Stuart Pimm, Peter Raven, Alan Peterson, Çağan H. Şekercioğlu, and Paul R. Ehrlich
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10941–10946. Published online 2006 July 7. doi: 10.1073/pnas.0604181103.
PMCID: PMC1544153
Evolution
From the Cover:
Tropical forests are both evolutionary cradles and museums of leaf beetle diversity
Duane D. McKenna and Brian D. Farrell
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10947–10951. Published online 2006 July 3. doi: 10.1073/pnas.0602712103.
PMCID: PMC1544154
Evolution of cooperation by multilevel selection
Arne Traulsen and Martin A. Nowak
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10952–10955. Published online 2006 July 7. doi: 10.1073/pnas.0602530103.
PMCID: PMC1544155
Mammalian monogamy is not controlled by a single gene
Sabine Fink, Laurent Excoffier, and Gerald Heckel
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10956–10960. Published online 2006 July 10. doi: 10.1073/pnas.0602380103.
PMCID: PMC1544156
Genetics
Details of Toll-like receptor:adapter interaction revealed by germ-line mutagenesis
Zhengfan Jiang, Philippe Georgel, Chenglong Li, Jungwoo Choe, Karine Crozat, Sophie Rutschmann, Xin Du, Tim Bigby, Suzanne Mudd, Sosathya Sovath, Ian A. Wilson, Arthur Olson, and Bruce Beutler
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10961–10966. Published online 2006 July 10. doi: 10.1073/pnas.0603804103.
PMCID: PMC1544157
Cross-species analysis of biological networks by Bayesian alignment
Johannes Berg and Michael Lässig
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10967–10972. Published online 2006 July 11. doi: 10.1073/pnas.0602294103.
PMCID: PMC1544158
Whirlin complexes with p55 at the stereocilia tip during hair cell development
Philomena Mburu, Yoshiaki Kikkawa, Stuart Townsend, Rosario Romero, Hiromichi Yonekawa, and Steve D. M. Brown
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10973–10978. Published online 2006 July 7. doi: 10.1073/pnas.0600923103.
PMCID: PMC1544159
Immunology
The NF-κB regulator Bcl-3 and the BH3-only proteins Bim and Puma control the death of activated T cells
Anette Bauer, Andreas Villunger, Verena Labi, Silke F. Fischer, Andreas Strasser, Hermann Wagner, Roland M. Schmid, and Georg Häcker
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10979–10984. Published online 2006 July 10. doi: 10.1073/pnas.0603625103.
PMCID: PMC1544160
Cytotoxic T lymphocytes kill multiple targets simultaneously via spatiotemporal uncoupling of lytic and stimulatory synapses
Aurelie Wiedemann, David Depoil, Mustapha Faroudi, and Salvatore Valitutti
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10985–10990. Published online 2006 July 10. doi: 10.1073/pnas.0600651103.
PMCID: PMC1544161
Medical Sciences
A universal vaccine for serogroup B meningococcus
Marzia M. Giuliani, Jeannette Adu-Bobie, Maurizio Comanducci, Beatrice Aricò, Silvana Savino, Laura Santini, Brunella Brunelli, Stefania Bambini, Alessia Biolchi, Barbara Capecchi, Elena Cartocci, Laura Ciucchi, Federica Di Marcello, Francesca Ferlicca, Barbara Galli, Enrico Luzzi, Vega Masignani, Davide Serruto, Daniele Veggi, Mario Contorni, Maurizio Morandi, Alessandro Bartalesi, Vanda Cinotti, Donatella Mannucci, Francesca Titta, Elisa Ovidi, Jo Anne Welsch, Dan Granoff, Rino Rappuoli, and Mariagrazia Pizza
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10834–10839. Published online 2006 July 6. doi: 10.1073/pnas.0603940103.
PMCID: PMC2047628
A molecular correlate to the Gleason grading system for prostate adenocarcinoma
Lawrence True, Ilsa Coleman, Sarah Hawley, Ching-Ying Huang, David Gifford, Roger Coleman, Tomasz M. Beer, Edward Gelmann, Milton Datta, Elahe Mostaghel, Beatrice Knudsen, Paul Lange, Robert Vessella, Daniel Lin, Leroy Hood, and Peter S. Nelson
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10991–10996. Published online 2006 July 7. doi: 10.1073/pnas.0603678103.
PMCID: PMC1544162
Identification of a receptor necessary for Nogo-B stimulated chemotaxis and morphogenesis of endothelial cells
Robert Qing Miao, Yuan Gao, Kenneth D. Harrison, Jay Prendergast, Lisette M. Acevedo, Jun Yu, Fenghua Hu, Stephen M. Strittmatter, and William C. Sessa
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10997–11002. Published online 2006 July 11. doi: 10.1073/pnas.0602427103.
PMCID: PMC1544163
Small-molecule modulators of p53 family signaling and antitumor effects in p53-deficient human colon tumor xenografts
Wenge Wang, Seok-Hyun Kim, and Wafik S. El-Deiry
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 11003–11008. Published online 2006 July 11. doi: 10.1073/pnas.0604507103.
PMCID: PMC1544164
Breaking the one antibody–one target axiom
Fang Guo, Sanjib Das, Barbara M. Mueller, Carlos F. Barbas, III, Richard A. Lerner, and Subhash C. Sinha
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 11009–11014. Published online 2006 July 5. doi: 10.1073/pnas.0603822103.
PMCID: PMC1488731
Cell cycle regulator E2F1 modulates angiogenesis via p53-dependent transcriptional control of VEGF
Gangjian Qin, Raj Kishore, Christine M. Dolan, Marcy Silver, Andrea Wecker, Corinne N. Luedemann, Tina Thorne, Allison Hanley, Cynthia Curry, Lindsay Heyd, Deepika Dinesh, Marianne Kearney, Fabio Martelli, Toshinori Murayama, David A. Goukassian, Yan Zhu, and Douglas W. Losordo
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 11015–11020. Published online 2006 July 11. doi: 10.1073/pnas.0509533103.
PMCID: PMC1544166
Essential role of nitric oxide in VEGF-induced, asthma-like angiogenic, inflammatory, mucus, and physiologic responses in the lung
Vineet Bhandari, Rayman Choo-Wing, Svetlana P. Chapoval, Chun G. Lee, C. Tang, Y. K. Kim, Bing Ma, Peter Baluk, Michelle I. Lin, Donald M. McDonald, Robert J. Homer, William C. Sessa, and Jack A. Elias
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 11021–11026. Published online 2006 July 10. doi: 10.1073/pnas.0601057103.
PMCID: PMC1544167
Microbiology
A Porphyromonas gingivalis haloacid dehalogenase family phosphatase interacts with human phosphoproteins and is important for invasion
Gena D. Tribble, Song Mao, Chloe E. James, and Richard J. Lamont
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 11027–11032. Published online 2006 July 10. doi: 10.1073/pnas.0509813103.
PMCID: PMC1544168
Imaging peptidoglycan biosynthesis in Bacillus subtilis with fluorescent antibiotics
Kittichoat Tiyanont, Thierry Doan, Michael B. Lazarus, Xiao Fang, David Z. Rudner, and Suzanne Walker
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 11033–11038. Published online 2006 July 10. doi: 10.1073/pnas.0600829103.
PMCID: PMC1544169
Neuroscience
Homeostatic shutdown of long-term potentiation in the adult hippocampus
Claudia Roth-Alpermann, Richard G. M. Morris, Martin Korte, and Tobias Bonhoeffer
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 11039–11044. Published online 2006 July 7. doi: 10.1073/pnas.0600894103.
PMCID: PMC1544170
Flanking sequences profoundly alter polyglutamine toxicity in yeast
Martin L. Duennwald, Smitha Jagadish, Paul J. Muchowski, and Susan Lindquist
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 11045–11050. Published online 2006 July 10. doi: 10.1073/pnas.0604547103.
PMCID: PMC1544171
A network of protein interactions determines polyglutamine toxicity
Martin L. Duennwald, Smitha Jagadish, Flaviano Giorgini, Paul J. Muchowski, and Susan Lindquist
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 11051–11056. Published online 2006 July 10. doi: 10.1073/pnas.0604548103.
PMCID: PMC1544172
Sialidase enhances spinal axon outgrowth in vivo
Lynda J. S. Yang, Ileana Lorenzini, Katarina Vajn, Andrea Mountney, Lawrence P. Schramm, and Ronald L. Schnaar
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 11057–11062. Published online 2006 July 17. doi: 10.1073/pnas.0604613103.
PMCID: PMC1544173
Temporally restricted substrate interactions direct fate and specification of neural precursors derived from embryonic stem cells
A. Katrin Goetz, Bjorn Scheffler, Huan-Xin Chen, Shanshan Wang, Oleg Suslov, Hui Xiang, Oliver Brüstle, Steve N. Roper, and Dennis A. Steindler
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 11063–11068. Published online 2006 July 10. doi: 10.1073/pnas.0510926103.
PMCID: PMC1544174
Pharmacology
The active metabolite of Clopidogrel disrupts P2Y12 receptor oligomers and partitions them out of lipid rafts
Pierre Savi, Jean-Luc Zachayus, Nathalie Delesque-Touchard, Catherine Labouret, Caroline Hervé, Marie-Françoise Uzabiaga, Jean-Marie Pereillo, Jean-Michel Culouscou, Françoise Bono, Pascual Ferrara, and Jean-Marc Herbert
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 11069–11074. Published online 2006 July 11. doi: 10.1073/pnas.0510446103.
PMCID: PMC1635153
Plant Biology
Yellow flowers generated by expression of the aurone biosynthetic pathway
Eiichiro Ono, Masako Fukuchi-Mizutani, Noriko Nakamura, Yuko Fukui, Keiko Yonekura-Sakakibara, Masaatsu Yamaguchi, Toru Nakayama, Takaharu Tanaka, Takaaki Kusumi, and Yoshikazu Tanaka
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 11075–11080. Published online 2006 July 10. doi: 10.1073/pnas.0604246103.
PMCID: PMC1544175
A subset of Arabidopsis AP2 transcription factors mediates cytokinin responses in concert with a two-component pathway
Aaron M. Rashotte, Michael G. Mason, Claire E. Hutchison, Fernando J. Ferreira, G. Eric Schaller, and Joseph J. Kieber
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 11081–11085. Published online 2006 July 10. doi: 10.1073/pnas.0602038103.
PMCID: PMC1544176
Plant cells recognize chitin fragments for defense signaling through a plasma membrane receptor
Hanae Kaku, Yoko Nishizawa, Naoko Ishii-Minami, Chiharu Akimoto-Tomiyama, Naoshi Dohmae, Koji Takio, Eiichi Minami, and Naoto Shibuya
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 11086–11091. Published online 2006 July 7. doi: 10.1073/pnas.0508882103.
PMCID: PMC1636686
Sustainability Science
From the Cover:
Human impacts on the rates of recent, present, and future bird extinctions
Stuart Pimm, Peter Raven, Alan Peterson, Çağan H. Şekercioğlu, and Paul R. Ehrlich
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 10941–10946. Published online 2006 July 7. doi: 10.1073/pnas.0604181103.
PMCID: PMC1544153
Prehistoric agricultural depletion of soil nutrients in Hawai'i
A. S. Hartshorn, O. A. Chadwick, P. M. Vitousek, and P. V. Kirch
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 11092–11097. Published online 2006 July 10. doi: 10.1073/pnas.0604594103.
PMCID: PMC1544177
Correction
Correction for Berglund et al., Brain response to putative pheromones in lesbian women
Proc Natl Acad Sci U S A. 2006 July 18; 103(29): 11098. Published online 2006 July 6. doi: 10.1073/pnas.0604339103.
PMCID: PMC1544178
Corrects: Hans Berglund, et al. Brain response to putative pheromones in lesbian women. Proc Natl Acad Sci U S A. 2006 May 23; 103(21): 8269–8274.
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