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Volume 103(22);  May 30, 2006
This Week in PNAS
In This Issue
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8301–8302. doi: 10.1073/iti2206103.
PMCID: PMC1482486
Commentaries
TL1A: A mediator of gut inflammation
Howard A. Young and Michael G. Tovey
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8303–8304. Published online 2006 May 22. doi: 10.1073/pnas.0602655103.
PMCID: PMC1482487
Evolving stealth: Genetic adaptation of Pseudomonas aeruginosa during cystic fibrosis infections
Dao Nguyen and Pradeep K. Singh
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8305–8306. Published online 2006 May 22. doi: 10.1073/pnas.0602526103.
PMCID: PMC1482488
Alcohol-sensitive GABA receptors and alcohol antagonists
Steven M. Paul
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8307–8308. Published online 2006 May 22. doi: 10.1073/pnas.0602862103.
PMCID: PMC1482489
Physical Sciences
Applied Mathematics
Distinct metastable atmospheric regimes despite nearly Gaussian statistics: A paradigm model
Andrew J. Majda, Christian L. Franzke, Alexander Fischer, and Daniel T. Crommelin
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8309–8314. Published online 2006 May 19. doi: 10.1073/pnas.0602641103.
PMCID: PMC1482490
Applied Physical Sciences
From the Cover:
Flows driven by flagella of multicellular organisms enhance long-range molecular transport
Martin B. Short, Cristian A. Solari, Sujoy Ganguly, Thomas R. Powers, John O. Kessler, and Raymond E. Goldstein
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8315–8319. Published online 2006 May 17. doi: 10.1073/pnas.0600566103.
PMCID: PMC1482491
Chemistry
The delivery of copper for thylakoid import observed by NMR
Lucia Banci, Ivano Bertini, Simone Ciofi-Baffoni, Nikolaos G. Kandias, Nigel J. Robinson, Georgios A. Spyroulias, Xun-Cheng Su, Stephen Tottey, and Murugendra Vanarotti
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8320–8325. Published online 2006 May 17. doi: 10.1073/pnas.0600142103.
PMCID: PMC1482492
From the Cover:
Evidence of hollow golden cages
Satya Bulusu, Xi Li, Lai-Sheng Wang, and Xiao Cheng Zeng
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8326–8330. Published online 2006 May 19. doi: 10.1073/pnas.0600637103.
PMCID: PMC1482493
Assessing implicit models for nonpolar mean solvation forces: The importance of dispersion and volume terms
Jason A. Wagoner and Nathan A. Baker
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8331–8336. Published online 2006 May 18. doi: 10.1073/pnas.0600118103.
PMCID: PMC1482494
Geology
Critical bifurcation of shallow microtidal landforms in tidal flats and salt marshes
Sergio Fagherazzi, Luca Carniello, Luigi D'Alpaos, and Andrea Defina
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8337–8341. Published online 2006 May 17. doi: 10.1073/pnas.0508379103.
PMCID: PMC1482495
Biological Sciences
Biochemistry
Locating active-site hydrogen atoms in d-xylose isomerase: Time-of-flight neutron diffraction
Amy K. Katz, Xinmin Li, H. L. Carrell, B. Leif Hanson, Paul Langan, Leighton Coates, Benno P. Schoenborn, Jenny P. Glusker, and Gerard J. Bunick
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8342–8347. Published online 2006 May 17. doi: 10.1073/pnas.0602598103.
PMCID: PMC1482496
The AAA ATPase p97 links peptide N-glycanase to the endoplasmic reticulum-associated E3 ligase autocrine motility factor receptor
Guangtao Li, Gang Zhao, Xiaoke Zhou, Hermann Schindelin, and William J. Lennarz
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8348–8353. Published online 2006 May 18. doi: 10.1073/pnas.0602747103.
PMCID: PMC1482497
A bifunctional tRNA import receptor from Leishmania mitochondria
Srikanta Goswami, Gunjan Dhar, Saikat Mukherjee, Bidesh Mahata, Saibal Chatterjee, Pratik Home, and Samit Adhya
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8354–8359. Published online 2006 May 19. doi: 10.1073/pnas.0510869103.
PMCID: PMC1482498
Cytosolic chaperonin protects folding intermediates of Gβ from aggregation by recognizing hydrophobic β-strands
Susumu Kubota, Hiroshi Kubota, and Kazuhiro Nagata
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8360–8365. Published online 2006 May 22. doi: 10.1073/pnas.0600195103.
PMCID: PMC1482499
An S-nitrosothiol (SNO) synthase function of hemoglobin that utilizes nitrite as a substrate
Michael Angelo, David J. Singel, and Jonathan S. Stamler
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8366–8371. Published online 2006 May 22. doi: 10.1073/pnas.0600942103.
PMCID: PMC1482500
Biophysics
Assessing implicit models for nonpolar mean solvation forces: The importance of dispersion and volume terms
Jason A. Wagoner and Nathan A. Baker
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8331–8336. Published online 2006 May 18. doi: 10.1073/pnas.0600118103.
PMCID: PMC1482494
Stochastic models for regulatory networks of the genetic toggle switch
Tianhai Tian and Kevin Burrage
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8372–8377. Published online 2006 May 19. doi: 10.1073/pnas.0507818103.
PMCID: PMC1482501
Conformation of the synaptobrevin transmembrane domain
Mark Bowen and Axel T. Brunger
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8378–8383. Published online 2006 May 18. doi: 10.1073/pnas.0602644103.
PMCID: PMC1463247
Complex of linker histone H5 with the nucleosome and its implications for chromatin packing
Li Fan and Victoria A. Roberts
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8384–8389. Published online 2006 May 22. doi: 10.1073/pnas.0508951103.
PMCID: PMC1482502
Alternative splicing in concert with protein intrinsic disorder enables increased functional diversity in multicellular organisms
Pedro R. Romero, Saima Zaidi, Ya Yin Fang, Vladimir N. Uversky, Predrag Radivojac, Christopher J. Oldfield, Marc S. Cortese, Megan Sickmeier, Tanguy LeGall, Zoran Obradovic, and A. Keith Dunker
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8390–8395. Published online 2006 May 22. doi: 10.1073/pnas.0507916103.
PMCID: PMC1482503
Effects of surface tethering on protein folding mechanisms
Miriam Friedel, Andrij Baumketner, and Joan-Emma Shea
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8396–8401. Published online 2006 May 18. doi: 10.1073/pnas.0601210103.
PMCID: PMC1482504
Developmental Biology
The RNA-binding protein Musashi is required intrinsically to maintain stem cell identity
Nicole A. Siddall, Eileen A. McLaughlin, Neisha L. Marriner, and Gary R. Hime
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8402–8407. Published online 2006 May 22. doi: 10.1073/pnas.0600906103.
PMCID: PMC1570104
Oxysterols stimulate Sonic hedgehog signal transduction and proliferation of medulloblastoma cells
Ryan B. Corcoran and Matthew P. Scott
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8408–8413. Published online 2006 May 17. doi: 10.1073/pnas.0602852103.
PMCID: PMC1462959
Developmental basis for hind-limb loss in dolphins and origin of the cetacean bodyplan
J. G. M. Thewissen, M. J. Cohn, L. S. Stevens, S. Bajpai, J. Heyning, and W. E. Horton, Jr.
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8414–8418. Published online 2006 May 22. doi: 10.1073/pnas.0602920103.
PMCID: PMC1482506
Hepatocyte nuclear factor 4α orchestrates expression of cell adhesion proteins during the epithelial transformation of the developing liver
Michele A. Battle, Genevieve Konopka, Fereshteh Parviz, Alexandra Lerch Gaggl, Chuhu Yang, Frances M. Sladek, and Stephen A. Duncan
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8419–8424. Published online 2006 May 19. doi: 10.1073/pnas.0600246103.
PMCID: PMC1482507
Ecology
Dynamic fragility of oceanic coral reef ecosystems
Nicholas A. J. Graham, Shaun K. Wilson, Simon Jennings, Nicholas V. C. Polunin, Jude P. Bijoux, and Jan Robinson
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8425–8429. Published online 2006 May 18. doi: 10.1073/pnas.0600693103.
PMCID: PMC1482508
Evolution
From the Cover:
Flows driven by flagella of multicellular organisms enhance long-range molecular transport
Martin B. Short, Cristian A. Solari, Sujoy Ganguly, Thomas R. Powers, John O. Kessler, and Raymond E. Goldstein
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8315–8319. Published online 2006 May 17. doi: 10.1073/pnas.0600566103.
PMCID: PMC1482491
A missing model in reproductive skew theory: The bordered tug-of-war
Hudson Kern Reeve and Sheng-Feng Shen
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8430–8434. Published online 2006 May 22. doi: 10.1073/pnas.0603005103.
PMCID: PMC1482509
Genetics
p63 heterozygous mutant mice are not prone to spontaneous or chemically induced tumors
William M. Keyes, Hannes Vogel, Maranke I. Koster, Xuecui Guo, Yi Qi, Kristin M. Petherbridge, Dennis R. Roop, Allan Bradley, and Alea A. Mills
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8435–8440. Published online 2006 May 19. doi: 10.1073/pnas.0602477103.
PMCID: PMC1482510
Immunology
From the Cover:
Role of TL1A and its receptor DR3 in two models of chronic murine ileitis
Giorgos Bamias, Margarita Mishina, Mark Nyce, William G. Ross, Giorgos Kollias, Jesus Rivera-Nieves, Theresa T. Pizarro, and Fabio Cominelli
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8441–8446. Published online 2006 May 12. doi: 10.1073/pnas.0510903103.
PMCID: PMC1482511
Thymic output in aged mice
J. Scott Hale, Tamar E. Boursalian, Gail L. Turk, and Pamela J. Fink
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8447–8452. Published online 2006 May 22. doi: 10.1073/pnas.0601040103.
PMCID: PMC1482512
Foxp3+ CD25+ regulatory T cells specific for a neo-self-antigen develop at the double-positive thymic stage
Julie Cabarrocas, Cécile Cassan, Fay Magnusson, Eliane Piaggio, Lennart Mars, Jens Derbinski, Bruno Kyewski, David-Alexandre Gross, Benoit L. Salomon, Khashayarsha Khazaie, Abdelhadi Saoudi, and Roland S. Liblau
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8453–8458. Published online 2006 May 18. doi: 10.1073/pnas.0603086103.
PMCID: PMC1482513
Essential role of mda-5 in type I IFN responses to polyriboinosinic:polyribocytidylic acid and encephalomyocarditis picornavirus
Leonid Gitlin, Winfried Barchet, Susan Gilfillan, Marina Cella, Bruce Beutler, Richard A. Flavell, Michael S. Diamond, and Marco Colonna
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8459–8464. Published online 2006 May 19. doi: 10.1073/pnas.0603082103.
PMCID: PMC1464000
Medical Sciences
Anomalous levels of Cl transporters in the hippocampal subiculum from temporal lobe epilepsy patients make GABA excitatory
E. Palma, M. Amici, F. Sobrero, G. Spinelli, S. Di Angelantonio, D. Ragozzino, A. Mascia, C. Scoppetta, V. Esposito, R. Miledi, and F. Eusebi
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8465–8468. Published online 2006 May 18. doi: 10.1073/pnas.0602979103.
PMCID: PMC1482515
Efficient gene delivery to pancreatic islets with ultrasonic microbubble destruction technology
Shuyuan Chen, Jia-huan Ding, Raffi Bekeredjian, Bing-zhi Yang, Ralph V. Shohet, Stephen A. Johnston, Hans E. Hohmeier, Christopher B. Newgard, and Paul A. Grayburn
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8469–8474. Published online 2006 May 18. doi: 10.1073/pnas.0602921103.
PMCID: PMC1482516
Evolution of hepatitis C viral quasispecies and hepatic injury in perinatally infected children followed prospectively
Patrizia Farci, Isabella Quinti, Stefania Farci, Harvey J. Alter, Rita Strazzera, Elvia Palomba, Alessandra Coiana, Daniele Cao, Anna Maria Casadei, Ritarella Ledda, Raffaele Iorio, Angela Vegnente, Giacomo Diaz, and Pier-Angelo Tovo
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8475–8480. Published online 2006 May 17. doi: 10.1073/pnas.0602546103.
PMCID: PMC1482517
Differential regulation of metabolic, neuroendocrine, and immune function by leptin in humans
Jean L. Chan, Giuseppe Matarese, Greeshma K. Shetty, Patricia Raciti, Iosif Kelesidis, Daniela Aufiero, Veronica De Rosa, Francesco Perna, Silvia Fontana, and Christos S. Mantzoros
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8481–8486. Published online 2006 May 19. doi: 10.1073/pnas.0505429103.
PMCID: PMC1482518
Microbiology
From the Cover:
Genetic adaptation by Pseudomonas aeruginosa to the airways of cystic fibrosis patients
Eric E. Smith, Danielle G. Buckley, Zaining Wu, Channakhone Saenphimmachak, Lucas R. Hoffman, David A. D’Argenio, Samuel I. Miller, Bonnie W. Ramsey, David P. Speert, Samuel M. Moskowitz, Jane L. Burns, Rajinder Kaul, and Maynard V. Olson
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8487–8492. Published online 2006 May 10. doi: 10.1073/pnas.0602138103.
PMCID: PMC1482519
A unique strategy for mRNA cap methylation used by vesicular stomatitis virus
Jianrong Li, Jennifer T. Wang, and Sean P. J. Whelan
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8493–8498. Published online 2006 May 18. doi: 10.1073/pnas.0509821103.
PMCID: PMC1482520
Inhibition of dsRNA-induced signaling in hepatitis C virus-infected cells by NS3 protease-dependent and -independent mechanisms
Guofeng Cheng, Jin Zhong, and Francis V. Chisari
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8499–8504. Published online 2006 May 17. doi: 10.1073/pnas.0602957103.
PMCID: PMC1482521
Attachment of capsular polysaccharide to the cell wall of Streptococcus pneumoniae type 2 is required for invasive disease
Judy K. Morona, Renato Morona, and James C. Paton
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8505–8510. Published online 2006 May 17. doi: 10.1073/pnas.0602148103.
PMCID: PMC1482522
The nonredundant roles of two 4′-phosphopantetheinyl transferases in vital processes of Mycobacteria
Christian Chalut, Laure Botella, Célia de Sousa-D’Auria, Christine Houssin, and Christophe Guilhot
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8511–8516. Published online 2006 May 18. doi: 10.1073/pnas.0511129103.
PMCID: PMC1570105
Neuroscience
Structural and functional recovery from early monocular deprivation in adult rats
Tommaso Pizzorusso, Paolo Medini, Silvia Landi, Sara Baldini, Nicoletta Berardi, and Lamberto Maffei
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8517–8522. Published online 2006 May 18. doi: 10.1073/pnas.0602657103.
PMCID: PMC1482523
Suppression of methamphetamine-seeking behavior by nicotinic agonists
Takato Hiranita, Yoko Nawata, Katsuya Sakimura, Kusnandar Anggadiredja, and Tsuneyuki Yamamoto
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8523–8527. Published online 2006 May 22. doi: 10.1073/pnas.0600347103.
PMCID: PMC1482524
Postsynaptic inositol 1,4,5-trisphosphate signaling maintains presynaptic function of parallel fiber–Purkinje cell synapses via BDNF
Kazuharu Furutani, Yohei Okubo, Sho Kakizawa, and Masamitsu Iino
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8528–8533. Published online 2006 May 18. doi: 10.1073/pnas.0600497103.
PMCID: PMC1482525
Microtubule affinity-regulating kinase 2 functions downstream of the PAR-3/PAR-6/atypical PKC complex in regulating hippocampal neuronal polarity
Y. M. Chen, Q. J. Wang, H. S. Hu, P. C. Yu, J. Zhu, G. Drewes, H. Piwnica-Worms, and Z. G. Luo
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8534–8539. Published online 2006 May 22. doi: 10.1073/pnas.0509955103.
PMCID: PMC1482526
Pharmacology
From the Cover:
Low-dose alcohol actions on α4β3δ GABAA receptors are reversed by the behavioral alcohol antagonist Ro15-4513
M. Wallner, H. J. Hanchar, and R. W. Olsen
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8540–8545. Published online 2006 May 12. doi: 10.1073/pnas.0600194103.
PMCID: PMC1482527
From the Cover:
Ethanol potently and competitively inhibits binding of the alcohol antagonist Ro15-4513 to α4/6β3δ GABAA receptors
H. Jacob Hanchar, Panida Chutsrinopkun, Pratap Meera, Porntip Supavilai, Werner Sieghart, Martin Wallner, and Richard W. Olsen
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8546–8551. Published online 2006 March 31. doi: 10.1073/pnas.0509903103.
PMCID: PMC1482528
Physiology
Liver-specific deletion of acetyl-CoA carboxylase 1 reduces hepatic triglyceride accumulation without affecting glucose homeostasis
Jianqiang Mao, Francesco J. DeMayo, Huiguang Li, Lutfi Abu-Elheiga, Ziwei Gu, Tattym E. Shaikenov, Parichher Kordari, Subrahmanyam S. Chirala, William C. Heird, and Salih J. Wakil
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8552–8557. Published online 2006 May 22. doi: 10.1073/pnas.0603115103.
PMCID: PMC1570106
WNK1 kinase isoform switch regulates renal potassium excretion
James B. Wade, Liang Fang, Jie Liu, Dimin Li, Chao-Ling Yang, Arohan R. Subramanya, Djikolngar Maouyo, Amanda Mason, David H. Ellison, and Paul A. Welling
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8558–8563. Published online 2006 May 18. doi: 10.1073/pnas.0603109103.
PMCID: PMC1482529
Plant Biology
Circadian rhythms in gene transcription imparted by chromosome compaction in the cyanobacterium Synechococcus elongatus
Rachelle M. Smith and Stanly B. Williams
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8564–8569. Published online 2006 May 17. doi: 10.1073/pnas.0508696103.
PMCID: PMC1482530
Corrections
Correction for Kang et al., Breast cancer bone metastasis mediated by the Smad tumor suppressor pathway
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8570. Published online 2006 May 15. doi: 10.1073/pnas.0603221103.
PMCID: PMC1482531
Corrects: Yibin Kang, et al. Breast cancer bone metastasis mediated by the Smad tumor suppressor pathway. Proc Natl Acad Sci U S A. 2005 September 27; 102(39): 13909–13914.
Correction for Mukherjee et al., Picosecond dynamics of a membrane protein revealed by 2D IR
Prabuddha Mukherjee, Itamar Kass, Isaiah T. Arkin, and Martin T. Zanni
Proc Natl Acad Sci U S A. 2006 May 30; 103(22): 8571. Published online 2006 May 15. doi: 10.1073/pnas.0602988103.
PMCID: PMC1482532
Corrects: Prabuddha Mukherjee, et al. Picosecond dynamics of a membrane protein revealed by 2D IR. Proc Natl Acad Sci U S A. 2006 March 7; 103(10): 3528–3533.
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