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Volume 11(8);  August 2005
Bioinformatics
RNA secondary structure prediction by centroids in a Boltzmann weighted ensemble
YE DING, CHI YU CHAN, and CHARLES E. LAWRENCE
RNA. 2005 August; 11(8): 1157–1166. doi: 10.1261/rna.2500605.
PMCID: PMC1370799
Molecular mimicry: Quantitative methods to study structural similarity between protein and RNA
HAN LIANG and LAURA F. LANDWEBER
RNA. 2005 August; 11(8): 1167–1172. doi: 10.1261/rna.7207205.
PMCID: PMC1370800
Articles
New ligase-derived RNA polymerase ribozymes
MICHAEL S. LAWRENCE and DAVID P. BARTEL
RNA. 2005 August; 11(8): 1173–1180. doi: 10.1261/rna.2110905.
PMCID: PMC1370801
Unorthodox mRNA start site to extend the highly structured leader of retrotransposon Tto1 mRNA increases transposition rate
GUDRUN BÖHMDORFER, IVO L. HOFACKER, KARIN GARBER, SRECKO JELENIC, VIKTORIA NIZHYNSKA, HIROHIKO HIROCHIKA, PETER F. STADLER, and ANDREAS BACHMAIR
RNA. 2005 August; 11(8): 1181–1191. doi: 10.1261/rna.2640105.
PMCID: PMC1370802
Induced fit of RNA on binding the L7Ae protein to the kink-turn motif
BEN TURNER, SONYA E. MELCHER, TIMOTHY J. WILSON, DAVID G. NORMAN, and DAVID M.J. LILLEY
RNA. 2005 August; 11(8): 1192–1200. doi: 10.1261/rna.2680605.
PMCID: PMC1370803
FRET analyses of the U2AF complex localize the U2AF35/U2AF65 interaction in vivo and reveal a novel self-interaction of U2AF35
JANET CHUSAINOW, PAUL M. AJUH, LAURA TRINKLE-MULCAHY, JUDITH E. SLEEMAN, JAN ELLENBERG, and ANGUS I. LAMOND
RNA. 2005 August; 11(8): 1201–1214. doi: 10.1261/rna.7277705.
PMCID: PMC1370804
Nop53p is required for late 60S ribosome subunit maturation and nuclear export in yeast
EMMA THOMSON and DAVID TOLLERVEY
RNA. 2005 August; 11(8): 1215–1224. doi: 10.1261/rna.2720205.
PMCID: PMC1370805
Biochemical and genomic analysis of substrate recognition by the double-stranded RNA binding domain of yeast RNase III
ANTHONY K. HENRAS, MUI SAM, SHAWNA L. HILEY, HAIHONG WU, TIMOTHY R. HUGHES, JULI FEIGON, and GUILLAUME F. CHANFREAU
RNA. 2005 August; 11(8): 1225–1237. doi: 10.1261/rna.2760705.
PMCID: PMC1370806
Ribavirin is not a functional mimic of the 7-methyl guanosine mRNA cap
YIFEI YAN, YURI SVITKIN, JOSEPH M. LEE, MARTIN BISAILLON, and JERRY PELLETIER
RNA. 2005 August; 11(8): 1238–1244. doi: 10.1261/rna.2930805.
PMCID: PMC1370807
Characterization of a highly variable eutherian microRNA gene
HRISTO B. HOUBAVIY, LUCAS DENNIS, RUDOLF JAENISCH, and PHILLIP A. SHARP
RNA. 2005 August; 11(8): 1245–1257. doi: 10.1261/rna.2890305.
PMCID: PMC1370808
Crystal structure and functional analysis of DEAD-box protein Dhh1p
ZHIHONG CHENG, JEFF COLLER, ROY PARKER, and HAIWEI SONG
RNA. 2005 August; 11(8): 1258–1270. doi: 10.1261/rna.2920905.
PMCID: PMC1370809
An end-healing enzyme from Clostridium thermocellum with 5′ kinase, 2′,3′ phosphatase, and adenylyltransferase activities
ALEXANDRA MARTINS and STEWART SHUMAN
RNA. 2005 August; 11(8): 1271–1280. doi: 10.1261/rna.2690505.
PMCID: PMC1370810
The bipartite structure of the tRNA m1A58 methyltransferase from S. cerevisiae is conserved in humans
SARAH OZANICK, ANNETTE KRECIC, JOSHUA ANDERSLAND, and JAMES T. ANDERSON
RNA. 2005 August; 11(8): 1281–1290. doi: 10.1261/rna.5040605.
PMCID: PMC1370811
Domain interactions within the Ski2/3/8 complex and between the Ski complex and Ski7p
LINGNA WANG, MARC S. LEWIS, and ARLEN W. JOHNSON
RNA. 2005 August; 11(8): 1291–1302. doi: 10.1261/rna.2060405.
PMCID: PMC1370812
Genome-wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs
ZHAN-PENG HUANG, HUI ZHOU, HUA-LIANG HE, CHUN-LONG CHEN, DAN LIANG, and LIANG-HU QU
RNA. 2005 August; 11(8): 1303–1316. doi: 10.1261/rna.2380905.
PMCID: PMC1370813
The role of ribosome recycling factor in dissociation of 70S ribosomes into subunits
GO HIROKAWA, ROMANA M. NIJMAN, V. SAMUEL RAJ, HIDEKO KAJI, KAZUEI IGARASHI, and AKIRA KAJI
RNA. 2005 August; 11(8): 1317–1328. doi: 10.1261/rna.2520405.
PMCID: PMC1370814
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