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Volume 11(3);  March 2005
Reports
Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes
SCOTT BASKERVILLE and DAVID P. BARTEL
RNA. 2005 March; 11(3): 241–247. doi: 10.1261/rna.7240905.
PMCID: PMC1370713
U2AF binding selects for the high conservation of the C. elegans 3′ splice site
COURTNEY HOLLINS, DIEGO A.R. ZORIO, MARGARET MACMORRIS, and THOMAS BLUMENTHAL
RNA. 2005 March; 11(3): 248–253. doi: 10.1261/rna.7221605.
PMCID: PMC1370714
Structural probing of a pathogenic tRNA dimer
MARC D. ROY, LISA M. WITTENHAGEN, and SHANA O. KELLEY
RNA. 2005 March; 11(3): 254–260. doi: 10.1261/rna.7143305.
PMCID: PMC1370715
Articles
Mutational analysis of the DEAD-box RNA helicase eIF4AII characterizes its interaction with transformation suppressor Pdcd4 and eIF4GI
HALINA ZAKOWICZ, HSIN-SHENG YANG, CRISTI STARK, ALEXANDER WLODAWER, NICOLE LARONDE-LEBLANC, and NANCY H. COLBURN
RNA. 2005 March; 11(3): 261–274. doi: 10.1261/rna.7191905.
PMCID: PMC1370716
Interaction of RRF and EF-G from E. coli and T. thermophilus with ribosomes from both origins—insight into the mechanism of the ribosome recycling step
V. SAMUEL RAJ, HIDEKO KAJI, and AKIRA KAJI
RNA. 2005 March; 11(3): 275–284. doi: 10.1261/rna.7201805.
PMCID: PMC1370717
Conserved spacing between the box C/D and C′/D′ RNPs of the archaeal box C/D sRNP complex is required for efficient 2′-O-methylation of target RNAs
ELIZABETH TRAN, XINXIN ZHANG, LELA LACKEY, and E. STUART MAXWELL
RNA. 2005 March; 11(3): 285–293. doi: 10.1261/rna.7223405.
PMCID: PMC1370718
Perinuclear localization of slow troponin C m RNA in muscle cells is controlled by a cis-element located at its 3′ untranslated region
KISHORE K. REDDY, FERRY M. OITOMEN, GOPAL P. PATEL, and JNANANKUR BAG
RNA. 2005 March; 11(3): 294–307. doi: 10.1261/rna.5460105.
PMCID: PMC1370719
Identification and characterization of critical cis-acting sequences within the yeast Ty1 retrotransposon
ERIC C. BOLTON, CANDICE COOMBES, YOLANDA EBY, MATTIAS CARDELL, and JEF D. BOEKE
RNA. 2005 March; 11(3): 308–322. doi: 10.1261/rna.7860605.
PMCID: PMC1370720
An evaluation of detection methods for large lariat RNAs
CANDICE E. COOMBES and JEF D. BOEKE
RNA. 2005 March; 11(3): 323–331. doi: 10.1261/rna.7124405.
PMCID: PMC1370721
A preformed compact ribosome-binding domain in the cricket paralysis-like virus IRES RNAs
DAVID COSTANTINO and JEFFREY S. KIEFT
RNA. 2005 March; 11(3): 332–343. doi: 10.1261/rna.7184705.
PMCID: PMC1370722
Method
SAFA: Semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments
RHIJU DAS, ALAIN LAEDERACH, SAMUEL M. PEARLMAN, DANIEL HERSCHLAG, and RUSS B. ALTMAN
RNA. 2005 March; 11(3): 344–354. doi: 10.1261/rna.7214405.
PMCID: PMC1262685
Small molecule control of pre-mRNA splicing
BRENTON R. GRAVELEY
RNA. 2005 March; 11(3): 355–358. doi: 10.1261/rna.7229705.
PMCID: PMC1370724
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