| | This journal provides immediate access to some articles. Bioinformatics Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification UWE OHLER, SORAYA YEKTA, LEE P. LIM, DAVID P. BARTEL, and CHRISTOPHER B. BURGE PMCID: PMC1370619 BayesFold: Rational 2° folds that combine thermodynamic, covariation, and chemical data for aligned RNA sequences ROB KNIGHT, AMANDA BIRMINGHAM, and MICHAEL YARUS PMCID: PMC1370620 Detection of genome-scale ordered RNA structure (GORS) in genomes of positive-stranded RNA viruses: Implications for virus evolution and host persistence PETER SIMMONDS, ANDREW TUPLIN, and DAVID J. EVANS PMCID: PMC1370621 Reports The yeast Apq12 protein affects nucleocytoplasmic mRNA transport KRISTIAN E. BAKER, JEFF COLLER, and ROY PARKER PMCID: PMC1370622 A stop codon-dependent internal secondary translation initiation region in Escherichia coli rpoS POCHI RAMALINGAM SUBBARAYAN and MALANCHA SARKAR PMCID: PMC1370623 Articles The contribution of metal ions to the structural stability of the large ribosomal subunit DANIEL J. KLEIN, PETER B. MOORE, and THOMAS A. STEITZ PMCID: PMC1370624 Solution structure of an RNA stem–loop derived from the 3′ conserved region of eel LINE UnaL2 SEIKI BABA, MASAKI KAJIKAWA, NORIHIRO OKADA, and GOTA KAWAI PMCID: PMC1370625 Solution structure of the pseudo-5′ splice site of a retroviral splicing suppressor JAVIER CABELLO-VILLEGAS, KEITH E. GILES, ANA MARIA SOTO, PING YU, ANNIE MOUGIN, KAREN L. BEEMON, and YUN-XING WANG PMCID: PMC1370626 Functional analysis of mRNA scavenger decapping enzymes SHIN-WU LIU, XINFU JIAO, HUDAN LIU, MEIGANG GU, CHRISTOPHER D. LIMA, and MEGERDITCH KILEDJIAN PMCID: PMC1370627 Crystal structure of archaeal ribonuclease P protein Ph1771p from Pyrococcus horikoshii OT3: An archaeal homolog of eukaryotic ribonuclease P protein Rpp29 TOMOYUKI NUMATA, IKUKO ISHIMATSU, YOSHIMITSU KAKUTA, ISAO TANAKA, and MAKOTO KIMURA PMCID: PMC1370628 High-affinity binding site for a group II intron-encoded reverse transcriptase/maturase within a stem–loop structure in the intron RNA KAZUO WATANABE and ALAN M. LAMBOWITZ PMCID: PMC1370629 Tissue-specific modification of gld-2 mRNA in C. elegans: Likely C-to-U editing LIAOTENG WANG, JUDITH KIMBLE, and MARVIN WICKENS PMCID: PMC1370630 Specificity of the STAR/GSG domain protein Qk1: Implications for the regulation of myelination SEAN P. RYDER and JAMES R. WILLIAMSON PMCID: PMC1370631 Method Ligand-induced changes in 2-aminopurine fluorescence as a probe for small molecule binding to HIV-1 TAR RNA THOMAS D. BRADRICK and JOHN P. MARINO PMCID: PMC1370632 Chemical synthesis and binding activity of the trypanosomatid cap-4 structure MAGDALENA LEWDOROWICZ, YAEL YOFFE, JOANNA ZUBEREK, JACEK JEMIELITY, JANUSZ STEPINSKI, RYSZARD KIERZEK, RYSZARD STOLARSKI, MICHAL SHAPIRA, and EDWARD DARZYNKIEWICZ PMCID: PMC1370633 Novel cap analogs for in vitro synthesis of mRNAs with high translational efficiency EWA GRUDZIEN, JANUSZ STEPINSKI, MARZENA JANKOWSKA-ANYSZKA, RYSZARD STOLARSKI, EDWARD DARZYNKIEWICZ, and ROBERT E. RHOADS PMCID: PMC1370634 |
