| | Articles Phosphorylation of rat mitochondrial transcription termination factor (mTERF) is required for transcription termination but not for binding to DNA Ascensión Prieto-Martín, Julio Montoya, and Francisco Martínez-Azorín PMCID: PMC407814 Differential evolution of the Saccharomyces cerevisiae DUP240 paralogs and implication of recombination in phylogeny V. Leh-Louis, B. Wirth, L. Despons, S. Wain-Hobson, S. Potier, and J. L. Souciet PMCID: PMC407815 Visualization of individual DNA loops and a map of loop domains in the human dystrophin gene Olga V. Iarovaia, Andrey Bystritskiy, Dmitrii Ravcheev, Ronald Hancock, and Sergey V. Razin PMCID: PMC407818 Thirteen-exon-motif signature for vertebrate nuclear and mitochondrial type IB topoisomerases Hongliang Zhang, Ling-Hua Meng, Drazen B. Zimonjic, Nicholas C. Popescu, and Yves Pommier PMCID: PMC407812 Genetic re-engineering of Saccharomyces cerevisiae RAD51 leads to a significant increase in the frequency of gene repair in vivo Li Liu, Katie K. Maguire, and Eric B. Kmiec PMCID: PMC407811 Enhanced cellular uptake of a triplex-forming oligonucleotide by nanoparticle formation in the presence of polypropylenimine dendrimers Latha M. Santhakumaran, Thresia Thomas, and T. J. Thomas PMCID: PMC407813 Evidence that RNA editing modulates splice site selection in the 5-HT2C receptor gene Rachel Flomen, Joanne Knight, Pak Sham, Robert Kerwin, and Andrew Makoff PMCID: PMC407821 The RNA-dependent RNA polymerase, QDE-1, is a rate-limiting factor in post-transcriptional gene silencing in Neurospora crassa Emma C. Forrest, Carlo Cogoni, and Giuseppe Macino PMCID: PMC407816 The fragile X mental retardation protein has nucleic acid chaperone properties Caroline Gabus, Rachid Mazroui, Sandra Tremblay, Edouard W. Khandjian, and Jean-Luc Darlix PMCID: PMC407820 Mutual interactions between subunits of the human RNase MRP ribonucleoprotein complex Tim J. M. Welting, Walther J. van Venrooij, and Ger J. M. Pruijn PMCID: PMC407822 Operon prediction by comparative genomics: an application to the Synechococcus sp. WH8102 genome X. Chen, Z. Su, P. Dam, B. Palenik, Y. Xu, and T. Jiang PMCID: PMC407844 Analysis of the unwinding activity of the dimeric RECQ1 helicase in the presence of human replication protein A Sheng Cui, Daniele Arosio, Kevin M. Doherty, Robert M. Brosh, Jr, Arturo Falaschi, and Alessandro Vindigni PMCID: PMC407823 Human telomerase catalyzes nucleolytic primer cleavage Sylvain Huard and Chantal Autexier PMCID: PMC407828 DNA base excision repair activities and pathway function in mitochondrial and cellular lysates from cells lacking mitochondrial DNA J.A. Stuart, K. Hashiguchi, D.M. Wilson, III, W.C. Copeland, N.C. Souza-Pinto, and V.A. Bohr PMCID: PMC407819 XRCC1 co-localizes and physically interacts with PCNA Jinshui Fan, Marit Otterlei, Heng-Kuan Wong, Alan E. Tomkinson, and David M. Wilson, III PMCID: PMC407833 Natural variants of hepatitis B virus X protein have differential effects on the expression of cyclin-dependent kinase inhibitor p21 gene Hyun Jin Kwun and Kyung Lib Jang PMCID: PMC407832 Crystal structure of the [Mg2+-(chromomycin A3)2]–d(TTGGCCAA)2 complex reveals GGCC binding specificity of the drug dimer chelated by a metal ion Ming-Hon Hou, Howard Robinson, Yi-Gui Gao, and Andrew H.-J. Wang PMCID: PMC407830 Unusual 2-aminopurine fluorescence from a complex of DNA and the EcoKI methyltransferase T.-J. Su, B. A. Connolly, C. Darlington, R. Mallin, and D. T. F. Dryden PMCID: PMC407817 The initiative role of XPC protein in cisplatin DNA damaging treatment-mediated cell cycle regulation Gan Wang, Lynn Chuang, Xiaohong Zhang, Stephanie Colton, Alan Dombkowski, John Reiners, Amy Diakiw, and Xiaoxin Susan Xu PMCID: PMC407824 Probing minor groove recognition contacts by DNA polymerases and reverse transcriptases using 3-deaza-2′-deoxyadenosine Cynthia L. Hendrickson, Kevin G. Devine, and Steven A. Benner PMCID: PMC407825 Dynamics of the B–A transition of DNA double helices Davis Jose and Dietmar Porschke PMCID: PMC407831 Transcription factor cCP2 controls gene expression in chicken embryonic stem cells Hervé Acloque, Anne Mey, Anne Marie Birot, Henri Gruffat, Bertrand Pain, and Jacques Samarut PMCID: PMC407827 Distinct sites of phosphorothioate substitution interfere with folding and splicing of the Anabaena group I intron Andrej Lupták and Jennifer A. Doudna PMCID: PMC407829 Locked nucleic acid modified DNA enzymes targeting early growth response-1 inhibit human vascular smooth muscle cell growth Roger G. Fahmy and Levon M. Khachigian PMCID: PMC407826 NAR Methods Online Two-step total gene synthesis method Lei Young and Qihan Dong PMCID: PMC407838 A new approach to SNP genotyping with fluorescently labeled mononucleotides Kyoko Takatsu, Toyokazu Yokomaku, Shinya Kurata, and Takahiro Kanagawa PMCID: PMC407834 Real-time PCR genotyping using displacing probes Jinping Cheng, Yongyou Zhang, and Qingge Li PMCID: PMC407835 Use of pteridine nucleoside analogs as hybridization probes Mary E. Hawkins and Frank M. Balis PMCID: PMC407840 A novel technique based on a PNA hybridization probe and FRET principle for quantification of mutant genotype in fibrous dysplasia/McCune–Albright syndrome Abdullah Karadag, Mara Riminucci, Paolo Bianco, Natasha Cherman, Sergei A. Kuznetsov, Nga Nguyen, Michael T. Collins, Pamela G. Robey, and Larry W. Fisher PMCID: PMC407839 Direct isolation of poly(A)+ RNA from 4 M guanidine thiocyanate-lysed cell extracts using locked nucleic acid-oligo(T) capture Nana Jacobsen, Peter Stein Nielsen, Daniel Charlton Jeffares, Jens Eriksen, Helle Ohlsson, Peter Arctander, and Sakari Kauppinen PMCID: PMC407836 Monitoring denaturation behaviour and comparative stability of DNA triple helices using oligonucleotide–gold nanoparticle conjugates Deirdre Murphy, Ramon Eritja, and Gareth Redmond PMCID: PMC407843 Control of siRNA expression using the Cre–loxP recombination system Vivi Kasim, Makoto Miyagishi, and Kazunari Taira PMCID: PMC407841 A genomic selection strategy to identify accessible and dimerization blocking targets in the 5′-UTR of HIV-1 RNA Martin R. Jakobsen, Christian K. Damgaard, Ebbe S. Andersen, Anna Podhajska, and Jørgen Kjems PMCID: PMC407842 Attachment of oligonucleotide probes to poly carbodiimide-coated glass for microarray applications Naoki Kimura, Ryuichi Oda, Yoshiaki Inaki, and Osamu Suzuki PMCID: PMC407837 |
