| | Articles Identification of CELF splicing activation and repression domains in vivo Jin Han and Thomas A. Cooper PMCID: PMC1126903 Unusual features of fibrillarin cDNA and gene structure in Euglena gracilis: evolutionary conservation of core proteins and structural predictions for methylation-guide box C/D snoRNPs throughout the domain Eucarya Anthony G. Russell, Yoh-ichi Watanabe, J. Michael Charette, and Michael W. Gray PMCID: PMC1126904 Localization of spermine binding sites in 23S rRNA by photoaffinity labeling: parsing the spermine contribution to ribosomal 50S subunit functions Maria A. Xaplanteri, Alexandros D. Petropoulos, George P. Dinos, and Dimitrios L. Kalpaxis PMCID: PMC1129027 Automated band mapping in electrophoretic gel images using background information Troy Zerr and Steven Henikoff PMCID: PMC1126905 Selection of novel mediators of E2F1-induced apoptosis through retroviral expression of an antisense cDNA library Z. Li, J. Stanelle, C. Leurs, H. Hanenberg, and B. M. Pützer PMCID: PMC1129028 Prediction of functional modules based on comparative genome analysis and Gene Ontology application Hongwei Wu, Zhengchang Su, Fenglou Mao, Victor Olman, and Ying Xu PMCID: PMC1130488 Mapping of transcription start sites in Saccharomyces cerevisiae using 5′ SAGE Zhihong Zhang and Fred S. Dietrich PMCID: PMC1131933 HP1 modulates the transcription of cell-cycle regulators in Drosophila melanogaster Filomena De Lucia, Jian-Quan Ni, Catherine Vaillant, and Fang-Lin Sun PMCID: PMC1131934 N-methylpurine DNA glycosylase overexpression increases alkylation sensitivity by rapidly removing non-toxic 7-methylguanine adducts M. L. Rinne, Y. He, B. F. Pachkowski, J. Nakamura, and M. R. Kelley PMCID: PMC1131935 The CHD remodeling factor Hrp1 stimulates CENP-A loading to centromeres Julian Walfridsson, Pernilla Bjerling, Maria Thalen, Eung-Jae Yoo, Sang Dai Park, and Karl Ekwall PMCID: PMC1133792 Effect of 6-thioguanine on the stability of duplex DNA Jen Bohon and Carlos R. de los Santos PMCID: PMC1131932 Formation and properties of hairpin and tetraplex structures of guanine-rich regulatory sequences of muscle-specific genes Anat Yafe, Shulamit Etzioni, Pnina Weisman-Shomer, and Michael Fry PMCID: PMC1133794 Highly prevalent putative quadruplex sequence motifs in human DNA Alan K. Todd, Matthew Johnston, and Stephen Neidle PMCID: PMC1140077 Prevalence of quadruplexes in the human genome Julian L. Huppert and Shankar Balasubramanian PMCID: PMC1140081 Kinetic analysis of the role of the tyrosine 13, phenylalanine 56 and glutamine 54 network in the U1A/U1 hairpin II interaction Michael J. Law, Eric J. Chambers, Phinikoula S. Katsamba, Ian S. Haworth, and Ite A. Laird-Offringa PMCID: PMC1140079 Internal initiation of translation of the TrkB mRNA is mediated by multiple regions within the 5′ leader Tara Dobson, Angela Minic, Kirsten Nielsen, Elizabeth Amiott, and Les Krushel PMCID: PMC1133793 New NTP analogs: the synthesis of 4′-thioUTP and 4′-thioCTP and their utility for SELEX Yuka Kato, Noriaki Minakawa, Yasuo Komatsu, Hiroyuki Kamiya, Naoki Ogawa, Hideyoshi Harashima, and Akira Matsuda PMCID: PMC1140078 CpG Island microarray probe sequences derived from a physical library are representative of CpG Islands annotated on the human genome Lawrence E. Heisler, Dax Torti, Paul C. Boutros, John Watson, Charles Chan, Neil Winegarden, Mark Takahashi, Patrick Yau, Tim H.-M. Huang, Peggy J. Farnham, Igor Jurisica, James R. Woodgett, Rod Bremner, Linda Z. Penn, and Sandy D. Der PMCID: PMC1137027 The ELAV RNA-stability factor HuR binds the 5′-untranslated region of the human IGF-IR transcript and differentially represses cap-dependent and IRES-mediated translation Zheng Meng, Peter H. King, L. Burt Nabors, Nateka L. Jackson, Ching-Yi Chen, Peter D. Emanuel, and Scott W. Blume PMCID: PMC1140080 Composite genome map and recombination parameters derived from three archetypal lineages of Toxoplasma gondii Asis Khan, Sonya Taylor, Chunlei Su, Aaron J. Mackey, Jon Boyle, Robert Cole, Darius Glover, Keliang Tang, Ian T. Paulsen, Matt Berriman, John C. Boothroyd, Elmer R. Pfefferkorn, J. P. Dubey, James W. Ajioka, David S. Roos, John C. Wootton, and L. David Sibley PMCID: PMC1137028 Human XPC-hHR23B interacts with XPA-RPA in the recognition of triplex-directed psoralen DNA interstrand crosslinks Brian S. Thoma, Mitsuo Wakasugi, Jesper Christensen, Madhava C. Reddy, and Karen M. Vasquez PMCID: PMC1140082 DNA damage response and Ku80 function in the vertebrate embryo Catherine L. Bladen, Wai K. Lam, William S. Dynan, and David J. Kozlowski PMCID: PMC1140083 GeMS: an advanced software package for designing synthetic genes Sebastian Jayaraj, Ralph Reid, and Daniel V. Santi PMCID: PMC1137029 Complicated water orientations in the minor groove of the B-DNA decamer d(CCATTAATGG)2 observed by neutron diffraction measurements Shigeki Arai, Toshiyuki Chatake, Takashi Ohhara, Kazuo Kurihara, Ichiro Tanaka, Nobuhiro Suzuki, Zui Fujimoto, Hiroshi Mizuno, and Nobuo Niimura PMCID: PMC1140084 Four base recognition by triplex-forming oligonucleotides at physiological pH David A. Rusling, Vicki E. C. Powers, Rohan T. Ranasinghe, Yang Wang, Sadie D. Osborne, Tom Brown, and Keith R. Fox PMCID: PMC1137030 DNA binding and helicase actions of mouse MCM4/6/7 helicase Zhiying You and Hisao Masai PMCID: PMC1140370 Global analysis of yeast RNA processing identifies new targets of RNase III and uncovers a link between tRNA 5′ end processing and tRNA splicing Shawna L. Hiley, Tomas Babak, and Timothy R. Hughes PMCID: PMC1140755 5-Halogenated pyrimidine lesions within a CpG sequence context mimic 5-methylcytosine by enhancing the binding of the methyl-CpG-binding domain of methyl-CpG-binding protein 2 (MeCP2) Victoria Valinluck, Pingfang Liu, Joseph I. Kang, Jr, Artur Burdzy, and Lawrence C. Sowers PMCID: PMC1140371 Activity of 3′-thioAMP derivatives as ribosomal P-site substrates Silke Dorner, Walther Schmid, and Andrea Barta PMCID: PMC1140372 Stimulation of the XPB ATP-dependent helicase by the beta subunit of TFIIE Yin C. Lin and Jay D. Gralla PMCID: PMC1140373 Methods Online Triplet nucleotide removal at random positions in a target gene: the tolerance of TEM-1 β-lactamase to an amino acid deletion D. Dafydd Jones PMCID: PMC1129029 Oligonucleotide-assisted cleavage and ligation: a novel directional DNA cloning technology to capture cDNAs. Application in the construction of a human immune antibody phage-display library Sonia Schoonbroodt, Nicolas Frans, Mark DeSouza, Rachel Eren, Smadar Priel, Naama Brosh, Judith Ben-Porath, Arie Zauberman, Ehud Ilan, Shlomo Dagan, Edward H. Cohen, Hennie R. Hoogenboom, Robert Charles Ladner, and René M. Hoet PMCID: PMC1131936 Offset recombinant PCR: a simple but effective method for shuffling compact heterologous domains David A. Rozak and Philip N. Bryan PMCID: PMC1130489 Magnetically assisted DNA assays: high selectivity using conjugated polymers for amplified fluorescent transduction Hui Xu, Haiping Wu, Fei Huang, Shiping Song, Wenxin Li, Yong Cao, and Chunhai Fan PMCID: PMC1131937 Sequence dependence of cross-hybridization on short oligo microarrays Chunlei Wu, Roberto Carta, and Li Zhang PMCID: PMC1140085 A novel transgenic chimaeric mouse system for the rapid functional evaluation of genes encoding secreted proteins Makoto Kakitani, Takeshi Oshima, Kaori Horikoshi, Tetsuo Yoshitome, Akiko Ueda, Miwa Kajikawa, Yumi Iba, Yoshinao Ozone, Yuki Ijima, Tohko Yoshino, Mikiko Itoh, Sachiko Seki, Ayako Aoki, Toshie Ishihara, Michiyo Shionoya, Utako Makino, Rina Kitada, Atsuko Ohguma, Takami Ohta, Yoshimasa Yoshida, Hiroe Kudoh, Kazunori Hanaoka, Kazunori Sibuya, Isao Ishida, Minoru Kakeda, Mikio Yagi, Takashi Yoneya, and Kazuma Tomizuka PMCID: PMC1140086 A versatile reducible polycation-based system for efficient delivery of a broad range of nucleic acids Martin L. Read, Surjeet Singh, Zubair Ahmed, Mark Stevenson, Simon S. Briggs, David Oupicky, Lee B. Barrett, Rachel Spice, Mark Kendall, Martin Berry, Jon A. Preece, Ann Logan, and Leonard W. Seymour PMCID: PMC1140087 Natural and synthetic tetracycline-inducible promoters for use in the antibiotic-producing bacteria Streptomyces Antonio Rodríguez-García, Patricia Combes, Rosario Pérez-Redondo, Matthew C. A. Smith, and Margaret C. M. Smith PMCID: PMC1140374 Targeted disruption of transcriptional regulatory function of p53 by a novel efficient method for introducing a decoy oligonucleotide into nuclei Masakiyo Sakaguchi, Takamasa Nukui, Hiroyuki Sonegawa, Hitoshi Murata, Junichiro Futami, Hidenori Yamada, and Nam-ho Huh PMCID: PMC1140756 |
