| | Commentaries Science – A life fully lived: Joe Sodroski wins the 2006 Retrovirology Prize Andrew ML Lever PMCID: PMC1523364 SNFing HIV transcription Michael Bukrinsky PMCID: PMC1555607 HTLV-1 Tax: centrosome amplification and cancer Anne Pumfery, Cynthia de la Fuente, and Fatah Kashanchi PMCID: PMC1555608 Beyond open access: open discourse, the next great equalizer Andrew I Dayton PMCID: PMC1569436 The pathogenesis of HIV infection: stupid may not be so dumb after all Stephen M Smith PMCID: PMC1592118 Andrew Kaplan (1959–2006): remembering a friend and a colleague Ronald Swanstrom PMCID: PMC1609177 A reflection on HIV/AIDS research after 25 years Robert C Gallo PMCID: PMC1629027 Beyond the first 25 years: The International AIDS Society and its role in the global response to AIDS Pedro Cahn and Craig McClure PMCID: PMC1762023 HIV research in Australia: linking basic research findings with clinical and public health outcomes Sharon R Lewin, John M Kaldor, and David A Cooper PMCID: PMC1693917 AIDS epidemic at age 25 and control efforts in China Yiming Shao PMCID: PMC1702549 'Libyan Trial': a verdict running counter to scientific evidence Eric Fleutelot PMCID: PMC1764901 Editorials The XVI International Conference on AIDS: The place to be! Mark A Wainberg PMCID: PMC1382252 The 2006 Retrovirology Prize: call for nominations Kuan-Teh Jeang PMCID: PMC1405738 Retrovirology: 3 at age 2 Kuan-Teh Jeang PMCID: PMC1483831 Libya, HIV, and open communication Kuan-Teh Jeang PMCID: PMC1766368 Research A peptide-loaded dendritic cell based cytotoxic T-lymphocyte (CTL) vaccination strategy using peptides that span SIV Tat, Rev, and Env overlapping reading frames Zachary Klase, Michael J Donio, Andrew Blauvelt, Preston A Marx, Kuan-Teh Jeang, and Stephen M Smith PMCID: PMC1360091 Factor correction as a tool to eliminate between-session variation in replicate experiments: application to molecular biology and retrovirology Jan M Ruijter, Helene H Thygesen, Onard JLM Schoneveld, Atze T Das, Ben Berkhout, and Wouter H Lamers PMCID: PMC1368993 Intracytoplasmic maturation of the human immunodeficiency virus type 1 reverse transcription complexes determines their capacity to integrate into chromatin Sergey Iordanskiy, Reem Berro, Maria Altieri, Fatah Kashanchi, and Michael Bukrinsky PMCID: PMC1360674 SUV39H1 interacts with HTLV-1 Tax and abrogates Tax transactivation of HTLV-1 LTR Koju Kamoi, Keiyu Yamamoto, Aya Misawa, Ariko Miyake, Takaomi Ishida, Yuetsu Tanaka, Manabu Mochizuki, and Toshiki Watanabe PMCID: PMC1363732 RTE and CTE mRNA export elements synergistically increase expression of unstable, Rev-dependent HIV and SIV mRNAs Sergey Smulevitch, Jenifer Bear, Candido Alicea, Margherita Rosati, Rashmi Jalah, Andrei S Zolotukhin, Agneta von Gegerfelt, Daniel Michalowski, Christoph Moroni, George N Pavlakis, and Barbara K Felber PMCID: PMC1363727 Reservoir cells no longer detectable after a heterologous SHIV challenge with the synthetic HIV-1 Tat Oyi vaccine Jennifer D Watkins, Sophie Lancelot, Grant R Campbell, Didier Esquieu, Jean de Mareuil, Sandrine Opi, Sylvie Annappa, Jean-Pierre Salles, and Erwann P Loret PMCID: PMC1434768 A suboptimal 5' splice site downstream of HIV-1 splice site A1 is required for unspliced viral mRNA accumulation and efficient virus replication Joshua M Madsen and C Martin Stoltzfus PMCID: PMC1403798 Intracellular assembly and budding of the Murine Leukemia Virus in infected cells Laurent Houzet, Bernard Gay, Zakia Morichaud, Laurence Briant, and Marylène Mougel PMCID: PMC1434767 Coordinate enhancement of transgene transcription and translation in a lentiviral vector Alper Yilmaz, Soledad Fernandez, Michael D Lairmore, and Kathleen Boris-Lawrie PMCID: PMC1388234 Higher transactivation activity associated with LTR and Tat elements from HIV-1 BF intersubtype recombinant variants Gabriela Turk, Mauricio Carobene, Ana Monczor, Andrea Elena Rubio, Manuel Gómez-Carrillo, and Horacio Salomón PMCID: PMC1402313 HTLV-I antisense transcripts initiating in the 3'LTR are alternatively spliced and polyadenylated Marie-Hélène Cavanagh, Sébastien Landry, Brigitte Audet, Charlotte Arpin-André, Patrick Hivin, Marie-Ève Paré, Julien Thête, Éric Wattel, Susan J Marriott, Jean-Michel Mesnard, and Benoit Barbeau PMCID: PMC1459196 Antiviral properties of two trimeric recombinant gp41 proteins Delphine Delcroix-Genête, Phenix-Lan Quan, Marie-Gaëlle Roger, Uriel Hazan, Sébastien Nisole, and Cécile Rousseau PMCID: PMC1435769 Evolution of the uniquely adaptable lentiviral envelope in a natural reservoir host LJ Demma, TH Vanderford, JM Logsdon, Jr, MB Feinberg, and SI Staprans PMCID: PMC1431560 Functional analysis of human T lymphotropic virus type 2 Tax proteins Noreen Sheehy, Lorraine Lillis, Karen Watters, Martha Lewis, Virginie Gautier, and William Hall PMCID: PMC1462996 Molecular characterization of the HIV-1 gag nucleocapsid gene associated with vertical transmission Brian P Wellensiek, Vasudha Sundaravaradan, Rajesh Ramakrishnan, and Nafees Ahmad PMCID: PMC1459197 Inhibition of constitutively active Jak-Stat pathway suppresses cell growth of human T-cell leukemia virus type 1-infected T-cell lines and primary adult T-cell leukemia cells Mariko Tomita, Hirochika Kawakami, Jun-nosuke Uchihara, Taeko Okudaira, Masato Masuda, Takehiro Matsuda, Yuetsu Tanaka, Kazuiku Ohshiro, and Naoki Mori PMCID: PMC1483830 Modes of transmission and genetic diversity of foamy viruses in a Macaca tonkeana colony Sara Calattini, Fanélie Wanert, Bernard Thierry, Christine Schmitt, Sylviane Bassot, Ali Saib, Nicolas Herrenschmidt, and Antoine Gessain PMCID: PMC1533860 Derivation of normal macrophages from human embryonic stem (hES) cells for applications in HIV gene therapy Joseph S Anderson, Sriram Bandi, Dan S Kaufman, and Ramesh Akkina PMCID: PMC1462997 Viral particles of the endogenous retrovirus ZAM from Drosophila melanogaster use a pre-existing endosome/exosome pathway for transfer to the oocyte E Brasset, AR Taddei, F Arnaud, B Faye, AM Fausto, M Mazzini, F Giorgi, and C Vaury PMCID: PMC1524798 Gene expression profiling of microglia infected by a highly neurovirulent murine leukemia virus: implications for neuropathogenesis Derek E Dimcheff, L Gwenn Volkert, Ying Li, Angelo L DeLucia, and William P Lynch PMCID: PMC1475625 Association between disruption of CD4 receptor dimerization and increased human immunodeficiency virus type 1 entry Rachel Bourgeois, Johanne Mercier, Isabelle Paquette-Brooks, and Éric A Cohen PMCID: PMC1524797 Induction of the HIV-1 Tat co-factor cyclin T1 during monocyte differentiation is required for the regulated expression of a large portion of cellular mRNAs Wendong Yu, Yan Wang, Chad A Shaw, Xiao-Feng Qin, and Andrew P Rice PMCID: PMC1557533 Interactions between Nef and AIP1 proliferate multivesicular bodies and facilitate egress of HIV-1 Luciana J Costa, Nan Chen, Adriana Lopes, Renato S Aguiar, Amilcar Tanuri, Ana Plemenitas, and B Matija Peterlin PMCID: PMC1526754 Mode of inhibition of HIV-1 Integrase by a C-terminal domain-specific monoclonal antibody* Joseph Ramcharan, Diana M Colleluori, George Merkel, Mark D Andrake, and Anna Marie Skalka PMCID: PMC1539010 Reduced CD4 T cell activation and in vitro susceptibility to HIV-1 infection in exposed uninfected Central Africans Evélyne Bégaud, Loïc Chartier, Valéry Marechal, Julienne Ipero, Josianne Léal, Pierre Versmisse, Guillaume Breton, Arnaud Fontanet, Corinne Capoulade-Metay, Hervé Fleury, Françoise Barré-Sinoussi, Daniel Scott-Algara, and Gianfranco Pancino PMCID: PMC1524799 Tumour necrosis factor-α stimulates HIV-1 replication in single-cycle infection of human term placental villi fragments in a time, viral dose and envelope dependent manner Anfumbom KW Kfutwah, Jean-Yves Mary, Marie-Anne Nicola, Sandra Blaise-Boisseau, Françoise Barré-Sinoussi, Ahidjo Ayouba, and Elisabeth Menu PMCID: PMC1533858 Inhibition of HIV Env binding to cellular receptors by monoclonal antibody 2G12 as probed by Fc-tagged gp120 James M Binley, Stacie Ngo-Abdalla, Penny Moore, Michael Bobardt, Udayan Chatterji, Philippe Gallay, Dennis R Burton, Ian A Wilson, John H Elder, and Aymeric de Parseval PMCID: PMC1543650 The predominance of Human Immunodeficiency Virus type 1 (HIV-1) circulating recombinant form 02 (CRF02_AG) in West Central Africa may be related to its replicative fitness Harr F Njai, Youssef Gali, Guido Vanham, Claude Clybergh, Wim Jennes, Nicole Vidal, Christelle Butel, Eitel Mpoudi-Ngolle, Martine Peeters, and Kevin K Ariën PMCID: PMC1525194 Characterization of HIV-1 envelope gp41 genetic diversity and functional domains following perinatal transmission Rajesh Ramakrishnan, Roshni Mehta, Vasudha Sundaravaradan, Tiffany Davis, and Nafees Ahmad PMCID: PMC1526753 Involvement of HTLV-I Tax and CREB in aneuploidy: a bioinformatics approach Cynthia de la Fuente, Madhur V Gupta, Zachary Klase, Katharine Strouss, Patrick Cahan, Timothy McCaffery, Anthony Galante, Patricia Soteropoulos, Anne Pumfery, Masahiro Fujii, and Fatah Kashanchi PMCID: PMC1553470 Transactivation of elements in the human endogenous retrovirus W family by viral infection Christoffer Nellåker, Yuanrong Yao, Lorraine Jones-Brando, François Mallet, Robert H Yolken, and Håkan Karlsson PMCID: PMC1539011 Candidate polyanion microbicides inhibit HIV-1 infection and dissemination pathways in human cervical explants Patricia S Fletcher, Gregory S Wallace, Pedro MM Mesquita, and Robin J Shattock PMCID: PMC1590048 Effect of SWI/SNF chromatin remodeling complex on HIV-1 Tat activated transcription Emmanuel Agbottah, Longwen Deng, Luke O Dannenberg, Anne Pumfery, and Fatah Kashanchi PMCID: PMC1570494 A method to estimate the efficiency of gene expression from an integrated retroviral vector Hoi Ping Mok and Andrew Lever PMCID: PMC1570495 Differential susceptibility of naïve, central memory and effector memory T cells to dendritic cell-mediated HIV-1 transmission Fedde Groot, Toni MM van Capel, Joost HN Schuitemaker, Ben Berkhout, and Esther C de Jong PMCID: PMC1562438 Transactivation and signaling functions of Tat are not correlated: biological and immunological characterization of HIV-1 subtype-C Tat protein Nagadenahalli Byrareddy Siddappa, Mohanram Venkatramanan, Prasanna Venkatesh, Mohanbabu Vijayamma Janki, Narayana Jayasuryan, Anita Desai, Vasanthapuram Ravi, and Udaykumar Ranga PMCID: PMC1564039 Role of common human TRIM5α variants in HIV-1 disease progression Valérie Goldschmidt, Gabriela Bleiber, Margaret May, Raquel Martinez, Millàn Ortiz, Amalio Telenti, and The Swiss HIV Cohort Study PMCID: PMC1560158 HIV-1 replication in cell lines harboring INI1/hSNF5 mutations Masha Sorin, Eric Yung, Xuhong Wu, and Ganjam V Kalpana PMCID: PMC1592304 The virion-associated incoming HIV-1 RNA genome is not targeted by RNA interference Ellen M Westerhout, Olivier ter Brake, and Ben Berkhout PMCID: PMC1569866 HIV-2 Protease resistance defined in yeast cells Najoua Ben M'Barek, Gilles Audoly, Didier Raoult, and Pablo Gluschankof PMCID: PMC1570497 The conserved dileucine- and tyrosine-based motifs in MLV and MPMV envelope glycoproteins are both important to regulate a common Env intracellular trafficking Vincent Blot, Sandra Lopez-Vergès, Marie Breton, Claudine Pique, Clarisse Berlioz-Torrent, and Marie-Pierre Grange PMCID: PMC1592117 Zidovudine plus lamivudine in Human T-Lymphotropic Virus type-I-associated myelopathy: a randomised trial Graham P Taylor, Peter Goon, Yoshitaka Furukawa, Hannah Green, Anna Barfield, Angelina Mosley, Hirohisa Nose, Abdel Babiker, Peter Rudge, Koichiro Usuku, Mitsuhiro Osame, Charles RM Bangham, and Jonathan N Weber PMCID: PMC1590049 Construction of doxycyline-dependent mini-HIV-1 variants for the development of a virotherapy against leukemias Rienk E Jeeninga, Barbara Jan, Henk van den Berg, and Ben Berkhout PMCID: PMC1592508 Inhibition of PP2A by LIS1 increases HIV-1 gene expression Nicolas Epie, Tatyana Ammosova, Willie Turner, and Sergei Nekhai PMCID: PMC1615876 Effects of prostratin on Cyclin T1/P-TEFb function and the gene expression profile in primary resting CD4+ T cells Tzu-Ling Sung and Andrew P Rice PMCID: PMC1599745 Cyclophilin A interacts with diverse lentiviral capsids Tsai-Yu Lin and Michael Emerman PMCID: PMC1622752 Inactivation of tumor suppressor Dlg1 augments transformation of a T-cell line induced by human T-cell leukemia virus type 1 Tax protein Kojiro Ishioka, Masaya Higuchi, Masahiko Takahashi, Sakiko Yoshida, Masayasu Oie, Yuetsu Tanaka, Sugata Takahashi, Li Xie, Patrick L Green, and Masahiro Fujii PMCID: PMC1622753 Characterization of HIV-1 subtype C envelope glycoproteins from perinatally infected children with different courses of disease Hong Zhang, Federico Hoffmann, Jun He, Xiang He, Chipepo Kankasa, John T West, Charles D Mitchell, Ruth M Ruprecht, Guillermo Orti, and Charles Wood PMCID: PMC1635063 Dendritic cell-mediated HIV-1 transmission to T cells of LAD-1 patients is impaired due to the defect in LFA-1 Fedde Groot, Taco W Kuijpers, Ben Berkhout, and Esther C de Jong PMCID: PMC1635562 HIV-1 infection and CD4 T cell depletion in the humanized Rag2-/-γc-/- (RAG-hu) mouse model Bradford K Berges, William H Wheat, Brent E Palmer, Elizabeth Connick, and Ramesh Akkina PMCID: PMC1635423 Phosphorylation of HIV-1 Tat by CDK2 in HIV-1 transcription Tatyana Ammosova, Reem Berro, Marina Jerebtsova, Angela Jackson, Sharroya Charles, Zachary Klase, William Southerland, Victor R Gordeuk, Fatah Kashanchi, and Sergei Nekhai PMCID: PMC1636661 Human Immunodeficiency Virus-Type 1 LTR DNA contains an intrinsic gene producing antisense RNA and protein products Linda B Ludwig, Julian L Ambrus, Jr, Kristie A Krawczyk, Sanjay Sharma, Stephen Brooks, Chiu-Bin Hsiao, and Stanley A Schwartz PMCID: PMC1654176 Persistent resistance to HIV-1 infection in CD4 T cells from exposed uninfected Vietnamese individuals is mediated by entry and post-entry blocks Asier Sáez-Cirión, Pierre Versmisse, Lien X Truong, Lisa A Chakrabarti, Wassila Carpentier, Françoise Barré-Sinoussi, Daniel Scott-Algara, and Gianfranco Pancino PMCID: PMC1636660 Modification of the Tet-On regulatory system prevents the conditional-live HIV-1 variant from losing doxycycline-control Xue Zhou, Monique Vink, Ben Berkhout, and Atze T Das PMCID: PMC1637113 Nuclear Factor 90, a cellular dsRNA binding protein inhibits the HIV Rev-export function Silvio Urcuqui-Inchima, Maria Eugenia Castaño, Danièle Hernandez-Verdun, Georges St-Laurent, III, and Ajit Kumar PMCID: PMC1713252 Second site escape of a T20-dependent HIV-1 variant by a single amino acid change in the CD4 binding region of the envelope glycoprotein Chris E Baldwin and Ben Berkhout PMCID: PMC1698932 The strength of the HIV-1 3' splice sites affects Rev function Susanne Kammler, Marianne Otte, Ilona Hauber, Jørgen Kjems, Joachim Hauber, and Heiner Schaal PMCID: PMC1697824 Kinetic studies of HIV-1 and HIV-2 envelope glycoprotein-mediated fusion Stephen A Gallo, Jacqueline D Reeves, Himanshu Garg, Brian Foley, Robert W Doms, and Robert Blumenthal PMCID: PMC1693918 Influence of sequence identity and unique breakpoints on the frequency of intersubtype HIV-1 recombination Heather A Baird, Yong Gao, Román Galetto, Matthew Lalonde, Reshma M Anthony, Véronique Giacomoni, Measho Abreha, Jeffrey J Destefano, Matteo Negroni, and Eric J Arts PMCID: PMC1764423 Protein methylation is required to maintain optimal HIV-1 infectivity Nicole M Willemsen, Eleanor M Hitchen, Tracey J Bodetti, Ann Apolloni, David Warrilow, Sabine C Piller, and David Harrich PMCID: PMC1766367 PRMT6 diminishes HIV-1 Rev binding to and export of viral RNA Cédric F Invernizzi, Baode Xie, Stéphane Richard, and Mark A Wainberg PMCID: PMC1779295 Lung cancer induced in mice by the envelope protein of jaagsiekte sheep retrovirus (JSRV) closely resembles lung cancer in sheep infected with JSRV Sarah K Wootton, Michael J Metzger, Kelly L Hudkins, Charles E Alpers, Denis York, James C DeMartini, and A Dusty Miller PMCID: PMC1764900 Impaired RNA incorporation and dimerization in live attenuated leader-variants of SIVmac239 James B Whitney and Mark A Wainberg PMCID: PMC1766366 Tenofovir treatment augments anti-viral immunity against drug-resistant SIV challenge in chronically infected rhesus macaques Karin J Metzner, James M Binley, Agegnehu Gettie, Preston Marx, Douglas F Nixon, and Ruth I Connor PMCID: PMC1769512 Reviews Anti-viral RNA silencing: do we look like plants ? Anne Saumet and Charles-Henri Lecellier PMCID: PMC1363733 Latency: the hidden HIV-1 challenge Alessandro Marcello PMCID: PMC1379657 The retrovirus RNA trafficking granule: from birth to maturity Alan W Cochrane, Mark T McNally, and Andrew J Mouland PMCID: PMC1475878 HIV-1 associated dementia: symptoms and causes Mohammad Ghafouri, Shohreh Amini, Kamel Khalili, and Bassel E Sawaya PMCID: PMC1513597 The discovery of endogenous retroviruses Robin A Weiss PMCID: PMC1617120 Host-virus interaction: a new role for microRNAs Vinod Scaria, Manoj Hariharan, Souvik Maiti, Beena Pillai, and Samir K Brahmachari PMCID: PMC1626483 HIV infection of non-dividing cells: a divisive problem Ariberto Fassati PMCID: PMC1635064 The cell biology of HIV-1 and other retroviruses Eric O Freed and Andrew J Mouland PMCID: PMC1635732 Short Reports Patterns of evolution of host proteins involved in retroviral pathogenesis Millan Ortiz, Gabriela Bleiber, Raquel Martinez, Henrik Kaessmann, and Amalio Telenti PMCID: PMC1409793 Generation of H9 T-cells stably expressing a membrane-bound form of the cytoplasmic tail of the Env-glycoprotein: lack of transcomplementation of defective HIV-1 virions encoding C-terminally truncated Env Denise Holtkotte, Tanya Pfeiffer, and Valerie Bosch PMCID: PMC1475626 Intrahost variations in the envelope receptor-binding domain (RBD) of HTLV-1 and STLV-1 primary isolates Felix J Kim, Madakasira Lavanya, Antoine Gessain, Sandra Gallego, Jean-Luc Battini, Marc Sitbon, and Valérie Courgnaud PMCID: PMC1481548 Distinct expression profiles of TGF-β1 signaling mediators in pathogenic SIVmac and non-pathogenic SIVagm infections Mickaël J-Y Ploquin, Jean-François Desoutter, Patricia R Santos, Ivona Pandrea, Ousmane M Diop, Anne Hosmalin, Cécile Butor, Françoise Barre-Sinoussi, and Michaela C Müller-Trutwin PMCID: PMC1533859 Wild-type and central DNA flap defective HIV-1 lentiviral vector genomes: intracellular visualization at ultrastructural resolution levels Nathalie J Arhel, Sylvie Souquere-Besse, and Pierre Charneau PMCID: PMC1538615 Identification of the hASCT2-binding domain of the Env ERVWE1/syncytin-1 fusogenic glycoprotein Valérie Cheynet, Guy Oriol, and François Mallet PMCID: PMC1524976 The integrase interactor 1 (INI1) proteins facilitate Tat-mediated human immunodeficiency virus type 1 transcription Yasuo Ariumi, Fatima Serhan, Priscilla Turelli, Amalio Telenti, and Didier Trono PMCID: PMC1557532 First report of an HIV-1 triple recombinant of subtypes B, C and F in Buenos Aires, Argentina María A Pando, Lindsay M Eyzaguirre, Marcela Segura, Christian T Bautista, Rubén Marone, Ana Ceballos, Silvia M Montano, José L Sánchez, Mercedes Weissenbacher, María M Ávila, and Jean K Carr PMCID: PMC1570496 5' long terminal repeat (LTR)-selective methylation of latently infected HIV-1 provirus that is demethylated by reactivation signals Takaomi Ishida, Akiko Hamano, Tsukasa Koiwa, and Toshiki Watanabe PMCID: PMC1617119 Human TRIM5α mediated restriction of different HIV-1 subtypes and Lv2 sensitive and insensitive HIV-2 variants Patrick Kaumanns, Isabel Hagmann, and Matthias T Dittmar PMCID: PMC1635731 Human T-cell leukemia virus type 2 Tax protein induces interleukin 2-independent growth in a T-cell line Rie Kondo, Masaya Higuchi, Masahiko Takahashi, Masayasu Oie, Yuetsu Tanaka, Fumitake Gejyo, and Masahiro Fujii PMCID: PMC1697825 HIV-1 Tat interaction with Dicer: requirement for RNA Yamina Bennasser and Kuan-Teh Jeang PMCID: PMC1764028 |
