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Volume 98(26);  December 18, 2001
Commentaries
Creating a niche in the cytoskeleton: Actin reorganization by a protein kinase
Paul A. Janmey
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14745–14747. doi: 10.1073/pnas.011601598.
PMCID: PMC64925
Can engineered bacteria help control cancer?
Rakesh K. Jain and Neil S. Forbes
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14748–14750. doi: 10.1073/pnas.261606598.
PMCID: PMC64926
Feedback regulation of iron-sulfur cluster biosynthesis
Jeverson Frazzon and Dennis R. Dean
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14751–14753. doi: 10.1073/pnas.011579098.
PMCID: PMC64927
Genetic diversity and disease: Opportunities and challenge
John M. Scott
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14754–14756. doi: 10.1073/pnas.011601398.
PMCID: PMC64928
Progress in transthyretin fibrillogenesis research strengthens the amyloid hypothesis
Avijit Chakrabartty
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14757–14759. doi: 10.1073/pnas.261596398.
PMCID: PMC64929
Does amoeboid reasoning explain the evolution and maintenance of virulence factors in Cryptococcus neoformans?
Stuart M. Levitz
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14760–14762. doi: 10.1073/pnas.261612398.
PMCID: PMC64930
Tumor suppressors on 3p: A neoclassic quartet
Kay Huebner
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14763–14765. doi: 10.1073/pnas.261586598.
PMCID: PMC64931
How many ways to craft a cofactor?
Judith P. Klinman
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14766–14768. doi: 10.1073/pnas.011602498.
PMCID: PMC64932
Physical Sciences
Chemistry
Building highly sensitive dye assemblies for biosensing from molecular building blocks
Robert M. Jones, Liangde Lu, Roger Helgeson, Troy S. Bergstedt, Duncan W. McBranch, and David G. Whitten
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14769–14772. Published online 2001 December 11. doi: 10.1073/pnas.251555298.
PMCID: PMC64933
Identification of a small molecule inhibitor of Sir2p
Antonio Bedalov, Tonibelle Gatbonton, William P. Irvine, Daniel E. Gottschling, and Julian A. Simon
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15113–15118. doi: 10.1073/pnas.261574398.
PMCID: PMC64992
Engineering
Prediction of disclinations in nematic elastomers
Eliot Fried and Russell E. Todres
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14773–14777. doi: 10.1073/pnas.261395098.
PMCID: PMC64934
Geophysics
Trends of measured climate forcing agents
James E. Hansen and Makiko Sato
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14778–14783. doi: 10.1073/pnas.261553698.
PMCID: PMC64935
A large carbon sink in the woody biomass of Northern forests
R. B. Myneni, J. Dong, C. J. Tucker, R. K. Kaufmann, P. E. Kauppi, J. Liski, L. Zhou, V. Alexeyev, and M. K. Hughes
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14784–14789. Published online 2001 December 11. doi: 10.1073/pnas.261555198.
PMCID: PMC64936
Biological Sciences
Biochemistry
Structural basis for the activation of human procaspase-7
Stefan J. Riedl, Pablo Fuentes-Prior, Martin Renatus, Norman Kairies, Stephan Krapp, Robert Huber, Guy S. Salvesen, and Wolfram Bode
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14790–14795. doi: 10.1073/pnas.221580098.
PMCID: PMC64937
Combining multiple structure and sequence alignments to improve sequence detection and alignment: Application to the SH2 domains of Janus kinases
Bissan Al-Lazikani, Felix B. Sheinerman, and Barry Honig
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14796–14801. doi: 10.1073/pnas.011577898.
PMCID: PMC64938
The remarkable structural and functional organization of the eukaryotic pyruvate dehydrogenase complexes
Z. Hong Zhou, Diane B. McCarthy, Catherine M. O'Connor, Lester J. Reed, and James K. Stoops
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14802–14807. doi: 10.1073/pnas.011597698.
PMCID: PMC64939
Crystal structure of the macrocycle-forming thioesterase domain of the erythromycin polyketide synthase: Versatility from a unique substrate channel
Shiou-Chuan Tsai, Larry J. W. Miercke, Jolanta Krucinski, Rajesh Gokhale, Julian C.-H. Chen, Paul G. Foster, David E. Cane, Chaitan Khosla, and Robert M. Stroud
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14808–14813. doi: 10.1073/pnas.011399198.
PMCID: PMC64940
Extension of the Drosophila lifespan by overexpression of a protein repair methyltransferase
David A. Chavous, F. Rob Jackson, and Clare M. O'Connor
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14814–14818. Published online 2001 December 11. doi: 10.1073/pnas.251446498.
PMCID: PMC64941
betawrap: Successful prediction of parallel β-helices from primary sequence reveals an association with many microbial pathogens
Phil Bradley, Lenore Cowen, Matthew Menke, Jonathan King, and Bonnie Berger
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14819–14824. doi: 10.1073/pnas.251267298.
PMCID: PMC64942
Side-chain repacking calculations for predicting structures and stabilities of heterodimeric coiled coils
Amy E. Keating, Vladimir N. Malashkevich, Bruce Tidor, and Peter S. Kim
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14825–14830. doi: 10.1073/pnas.261563398.
PMCID: PMC64943
RNase P-mediated inhibition of cytomegalovirus protease expression and viral DNA encapsidation by oligonucleotide external guide sequences
Walter Dunn, Phong Trang, Umair Khan, Jiaming Zhu, and Fenyong Liu
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14831–14836. Published online 2001 December 11. doi: 10.1073/pnas.261560598.
PMCID: PMC64944
Studies on the nonmevalonate pathway to terpenes: The role of the GcpE (IspG) protein
Stefan Hecht, Wolfgang Eisenreich, Petra Adam, Sabine Amslinger, Klaus Kis, Adelbert Bacher, Duilio Arigoni, and Felix Rohdich
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14837–14842. doi: 10.1073/pnas.201399298.
PMCID: PMC64945
Partial purification and identification of GDP-mannose 3",5"-epimerase of Arabidopsis thaliana, a key enzyme of the plant vitamin C pathway
Beata A. Wolucka, Geert Persiau, Jan Van Doorsselaere, Mark W. Davey, Hans Demol, Joël Vandekerckhove, Marc Van Montagu, Marc Zabeau, and Wout Boerjan
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14843–14848. doi: 10.1073/pnas.011578198.
PMCID: PMC64946
A “master” in base unpairing during isomerization of a promoter upon RNA polymerase binding
Heon Man Lim, Hee Jung Lee, Siddhartha Roy, and Sankar Adhya
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14849–14852. Published online 2001 December 4. doi: 10.1073/pnas.261517398.
PMCID: PMC64947
Effects of common polymorphisms on the properties of recombinant human methylenetetrahydrofolate reductase
Kazuhiro Yamada, Zhoutao Chen, Rima Rozen, and Rowena G. Matthews
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14853–14858. Published online 2001 December 11. doi: 10.1073/pnas.261469998.
PMCID: PMC64948
The temperature-signaling cascade in sponges involves a heat-gated cation channel, abscisic acid, and cyclic ADP-ribose
Elena Zocchi, Armando Carpaneto, Carlo Cerrano, Giorgio Bavestrello, Marco Giovine, Santina Bruzzone, Lucrezia Guida, Luisa Franco, and Cesare Usai
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14859–14864. doi: 10.1073/pnas.261448698.
PMCID: PMC64949
From the Cover:
The Abl-related gene (Arg) nonreceptor tyrosine kinase uses two F-actin-binding domains to bundle F-actin
Yinxiang Wang, Ann L. Miller, Mark S. Mooseker, and Anthony J. Koleske
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14865–14870. doi: 10.1073/pnas.251249298.
PMCID: PMC64950
Arp2/3 complex requires hydrolyzable ATP for nucleation of new actin filaments
Mark J. Dayel, Elizabeth A. Holleran, and R. Dyche Mullins
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14871–14876. doi: 10.1073/pnas.261419298.
PMCID: PMC64951
Oligomeric structure of virion-associated and soluble forms of the simian immunodeficiency virus envelope protein in the prefusion activated conformation
Rob J. Center, Peter Schuck, Richard D. Leapman, Larry O. Arthur, Patricia L. Earl, Bernard Moss, and Jacob Lebowitz
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14877–14882. doi: 10.1073/pnas.261573898.
PMCID: PMC64952
DNA supercoiling allows enhancer action over a large distance
Ye Liu, Vladimir Bondarenko, Alexander Ninfa, and Vasily M. Studitsky
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14883–14888. Published online 2001 December 11. doi: 10.1073/pnas.261477898.
PMCID: PMC64953
β-Arrestin1 modulates lymphoid enhancer factor transcriptional activity through interaction with phosphorylated dishevelled proteins
Wei Chen, Liaoyuan A. Hu, Mikhail V. Semenov, Shinichi Yanagawa, Akira Kikuchi, Robert J. Lefkowitz, and William E. Miller
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14889–14894. Published online 2001 December 11. doi: 10.1073/pnas.211572798.
PMCID: PMC64954
From the Cover:
IscR, an Fe-S cluster-containing transcription factor, represses expression of Escherichia coli genes encoding Fe-S cluster assembly proteins
Christopher J. Schwartz, Jennifer L. Giel, Thomas Patschkowski, Christopher Luther, Frank J. Ruzicka, Helmut Beinert, and Patricia J. Kiley
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14895–14900. Published online 2001 December 11. doi: 10.1073/pnas.251550898.
PMCID: PMC64955
Glycopeptide antibiotic biosynthesis: Enzymatic assembly of the dedicated amino acid monomer (S)-3,5-dihydroxyphenylglycine
Huawei Chen, Claire C. Tseng, Brian K. Hubbard, and Christopher T. Walsh
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14901–14906. doi: 10.1073/pnas.221582098.
PMCID: PMC64956
Biophysics
Cell behavior in traveling wave patterns of myxobacteria
Roy Welch and Dale Kaiser
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14907–14912. doi: 10.1073/pnas.261574598.
PMCID: PMC64957
Pattern formation and traveling waves in myxobacteria: Theory and modeling
Oleg A. Igoshin, Alex Mogilner, Roy D. Welch, Dale Kaiser, and George Oster
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14913–14918. doi: 10.1073/pnas.221579598.
PMCID: PMC64958
Multiparticle adhesive dynamics: Hydrodynamic recruitment of rolling leukocytes
Michael R. King and Daniel A. Hammer
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14919–14924. doi: 10.1073/pnas.261272498.
PMCID: PMC64959
From the Cover:
Cryoelectron microscopy of λ phage DNA condensates in vitreous ice: The fine structure of DNA toroids
Nicholas V. Hud and Kenneth H. Downing
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14925–14930. Published online 2001 December 4. doi: 10.1073/pnas.261560398.
PMCID: PMC64960
The free energy landscape for β hairpin folding in explicit water
Ruhong Zhou, Bruce J. Berne, and Robert Germain
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14931–14936. doi: 10.1073/pnas.201543998.
PMCID: PMC64961
Computational study of protein specificity: The molecular basis of HIV-1 protease drug resistance
Wei Wang and Peter A. Kollman
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14937–14942. doi: 10.1073/pnas.251265598.
PMCID: PMC64962
The V122I cardiomyopathy variant of transthyretin increases the velocity of rate-limiting tetramer dissociation, resulting in accelerated amyloidosis
Xin Jiang, Joel N. Buxbaum, and Jeffery W. Kelly
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14943–14948. doi: 10.1073/pnas.261419998.
PMCID: PMC64963
Mapping the actin filament with myosin
Walter Steffen, David Smith, Robert Simmons, and John Sleep
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14949–14954. Published online 2001 December 4. doi: 10.1073/pnas.261560698.
PMCID: PMC64964
Cell Biology
Wild-type PrP and a mutant associated with prion disease are subject to retrograde transport and proteasome degradation
Jiyan Ma and Susan Lindquist
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14955–14960. Published online 2001 December 11. doi: 10.1073/pnas.011578098.
PMCID: PMC64965
Gαi3 binding to calnuc on Golgi membranes in living cells monitored by fluorescence resonance energy transfer of green fluorescent protein fusion proteins
Thomas S. Weiss, Chester E. Chamberlain, Tetsuro Takeda, Ping Lin, Klaus M. Hahn, and Marilyn Gist Farquhar
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14961–14966. doi: 10.1073/pnas.261572098.
PMCID: PMC64966
Tumor induction by an Lck-MyrAkt transgene is delayed by mechanisms controlling the size of the thymus
Scott Malstrom, Esmerina Tili, Dietmar Kappes, Jeffrey D. Ceci, and Philip N. Tsichlis
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14967–14972. doi: 10.1073/pnas.231467698.
PMCID: PMC64967
Elevated expression of axin2 and hnkd mRNA provides evidence that Wnt/β-catenin signaling is activated in human colon tumors
Dong Yan, Marion Wiesmann, Michael Rohan, Vivien Chan, Ann B. Jefferson, Lida Guo, Doreen Sakamoto, Roger H. Caothien, John H. Fuller, Christoph Reinhard, Pablo D. Garcia, Filippo M. Randazzo, Jaime Escobedo, Wendy J. Fantl, and Lewis T. Williams
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14973–14978. doi: 10.1073/pnas.261574498.
PMCID: PMC64968
The γ-secretase-cleaved C-terminal fragment of amyloid precursor protein mediates signaling to the nucleus
Yuehua Gao and Sanjay W. Pimplikar
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14979–14984. Published online 2001 December 11. doi: 10.1073/pnas.261463298.
PMCID: PMC64969
Granzyme B can cause mitochondrial depolarization and cell death in the absence of BID, BAX, and BAK
Dori A. Thomas, Luca Scorrano, Girish V. Putcha, Stanley J. Korsmeyer, and Timothy J. Ley
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14985–14990. doi: 10.1073/pnas.261581498.
PMCID: PMC64970
A genetic screen identifies a cellular regulator of adeno-associated virus
Toni Cathomen, Travis H. Stracker, Luz Beatriz Gilbert, and Matthew D. Weitzman
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14991–14996. Published online 2001 December 4. doi: 10.1073/pnas.261567198.
PMCID: PMC64971
Genetically encoded reporters of protein kinase A activity reveal impact of substrate tethering
Jin Zhang, Yuliang Ma, Susan S. Taylor, and Roger Y. Tsien
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14997–15002. doi: 10.1073/pnas.211566798.
PMCID: PMC64972
Genetically encoded fluorescent reporters of protein tyrosine kinase activities in living cells
Alice Y. Ting, Kristin H. Kain, Richard L. Klemke, and Roger Y. Tsien
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15003–15008. doi: 10.1073/pnas.211564598.
PMCID: PMC64973
Direct real-time observation of actin filament branching mediated by Arp2/3 complex using total internal reflection fluorescence microscopy
Kurt J. Amann and Thomas D. Pollard
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15009–15013. Published online 2001 December 11. doi: 10.1073/pnas.211556398.
PMCID: PMC64974
Developmental Biology
Cell behavior in traveling wave patterns of myxobacteria
Roy Welch and Dale Kaiser
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 14907–14912. doi: 10.1073/pnas.261574598.
PMCID: PMC64957
neurogenin2 elicits the genesis of retinal neurons from cultures of nonneural cells
Run-Tao Yan, Wen-Xin Ma, and Shu-Zhen Wang
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15014–15019. doi: 10.1073/pnas.261455698.
PMCID: PMC64975
PDK1 regulates growth through Akt and S6K in Drosophila
Felix Rintelen, Hugo Stocker, George Thomas, and Ernst Hafen
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15020–15025. doi: 10.1073/pnas.011318098.
PMCID: PMC64976
Ecology
Regular exposure to rabies virus and lack of symptomatic disease in Serengeti spotted hyenas
Marion L. East, Heribert Hofer, James H. Cox, Ulrich Wulle, Harald Wiik, and Christian Pitra
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15026–15031. Published online 2001 December 11. doi: 10.1073/pnas.261411898.
PMCID: PMC64977
Evolution
A receptor tyrosine kinase from choanoflagellates: Molecular insights into early animal evolution
Nicole King and Sean B. Carroll
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15032–15037. doi: 10.1073/pnas.261477698.
PMCID: PMC64978
Antigen polymorphism in Borrelia hermsii, a clonal pathogenic bacterium
Stephen M. Rich, Stanley A. Sawyer, and Alan G. Barbour
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15038–15043. Published online 2001 December 11. doi: 10.1073/pnas.071042098.
PMCID: PMC64979
Genetics
Gene expression in papillary thyroid carcinoma reveals highly consistent profiles
Ying Huang, Manju Prasad, William J. Lemon, Heather Hampel, Fred A. Wright, Karl Kornacker, Virginia LiVolsi, Wendy Frankel, Richard T. Kloos, Charis Eng, Natalia S. Pellegata, and Albert de la Chapelle
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15044–15049. doi: 10.1073/pnas.251547398.
PMCID: PMC64980
A protein trap strategy to detect GFP-tagged proteins expressed from their endogenous loci in Drosophila
Xavier Morin, Richard Daneman, Michael Zavortink, and William Chia
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15050–15055. Published online 2001 December 11. doi: 10.1073/pnas.261408198.
PMCID: PMC64981
Recombination and mutation during long-term gastric colonization by Helicobacter pylori: Estimates of clock rates, recombination size, and minimal age
Daniel Falush, Christian Kraft, Nancy S. Taylor, Pelayo Correa, James G. Fox, Mark Achtman, and Sebastian Suerbaum
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15056–15061. Published online 2001 December 11. doi: 10.1073/pnas.251396098.
PMCID: PMC64982
Inadequate lung development and bronchial hyperplasia in mice with a targeted deletion in the Dutt1/Robo1 gene
Jian Xian, Katherine J. Clark, Rosalyn Fordham, Richard Pannell, Terence H. Rabbitts, and Pamela H. Rabbitts
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15062–15066. Published online 2001 December 4. doi: 10.1073/pnas.251407098.
PMCID: PMC64983
Siah-1 binds and regulates the function of Numb
Laurent Susini, Brent J. Passer, Nathalie Amzallag-Elbaz, Tamar Juven-Gershon, Sylvie Prieur, Nicolas Privat, Marcel Tuynder, Marie-Claude Gendron, Alain Israël, Robert Amson, Moshe Oren, and Adam Telerman
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15067–15072. doi: 10.1073/pnas.261571998.
PMCID: PMC64984
The expression of human α-like globin genes in transgenic mice mediated by bacterial artificial chromosome
Dong-Xiao Feng, De-Pei Liu, Yue Huang, Lin Wu, Tie-Chang Li, Min Wu, Xiao-Bin Tang, and Chih-Chuan Liang
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15073–15077. Published online 2001 December 11. doi: 10.1073/pnas.251550598.
PMCID: PMC64985
The double par locus of virulence factor pB171: DNA segregation is correlated with oscillation of ParA
Gitte Ebersbach and Kenn Gerdes
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15078–15083. doi: 10.1073/pnas.261569598.
PMCID: PMC64986
DNA-PKcs is critical for telomere capping
David Gilley, Hiromi Tanaka, M. Prakash Hande, Akihiro Kurimasa, Gloria C. Li, Mitsuo Oshimura, and David J. Chen
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15084–15088. Published online 2001 December 11. doi: 10.1073/pnas.261574698.
PMCID: PMC64987
Insight into hepatocellular carcinogenesis at transcriptome level by comparing gene expression profiles of hepatocellular carcinoma with those of corresponding noncancerous liver
Xiang-Ru Xu, Jian Huang, Zhi-Gang Xu, Bin-Zhi Qian, Zhi-Dong Zhu, Qing Yan, Ting Cai, Xin Zhang, Hua-Sheng Xiao, Jian Qu, Feng Liu, Qiu-Hua Huang, Zhi-Hong Cheng, Neng-Gan Li, Jian-Jun Du, Wei Hu, Kun-Tang Shen, Gang Lu, Gang Fu, Ming Zhong, Shu-Hua Xu, Wen-Yi Gu, Wei Huang, Xin-Tai Zhao, Geng-Xi Hu, Jian-Ren Gu, Zhu Chen, and Ze-Guang Han
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15089–15094. doi: 10.1073/pnas.241522398.
PMCID: PMC64988
A targeted dominant negative mutation of the thyroid hormone α1 receptor causes increased mortality, infertility, and dwarfism in mice
Masahiro Kaneshige, Hideyo Suzuki, Kumiko Kaneshige, Jun Cheng, Heather Wimbrow, Carrolee Barlow, Mark C. Willingham, and Sheue-yann Cheng
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15095–15100. Published online 2001 December 4. doi: 10.1073/pnas.261565798.
PMCID: PMC64989
Evolution of IESs and scrambling in the actin I gene in hypotrichous ciliates
Daniel J. Hogan, Elizabeth A. Hewitt, Kindra E. Orr, David M. Prescott, and Kirsten M. Müller
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15101–15106. Published online 2001 December 11. doi: 10.1073/pnas.011578598.
PMCID: PMC64990
Functional significance of concomitant inactivation of hMLH1 and hMSH6 in tumor cells of the microsatellite mutator phenotype
Svetlana Baranovskaya, Jose Luis Soto, Manuel Perucho, and Sergei R. Malkhosyan
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15107–15112. Published online 2001 December 11. doi: 10.1073/pnas.251234498.
PMCID: PMC64991
Identification of a small molecule inhibitor of Sir2p
Antonio Bedalov, Tonibelle Gatbonton, William P. Irvine, Daniel E. Gottschling, and Julian A. Simon
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15113–15118. doi: 10.1073/pnas.261574398.
PMCID: PMC64992
Immunology
A genome-wide analysis of immune responses in Drosophila
Phil Irving, Laurent Troxler, Timothy S. Heuer, Marcia Belvin, Casey Kopczynski, Jean-Marc Reichhart, Jules A. Hoffmann, and Charles Hetru
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15119–15124. Published online 2001 December 11. doi: 10.1073/pnas.261573998.
PMCID: PMC64993
Viperin (cig5), an IFN-inducible antiviral protein directly induced by human cytomegalovirus
Keh-Chuang Chin and Peter Cresswell
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15125–15130. doi: 10.1073/pnas.011593298.
PMCID: PMC64994
Age and stage dependency of estrogen receptor expression by lymphocyte precursors
Hideya Igarashi, Taku Kouro, Takafumi Yokota, Phillip C. Comp, and Paul W. Kincade
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15131–15136. doi: 10.1073/pnas.011513098.
PMCID: PMC64995
T-bet is rapidly induced by interferon-γ in lymphoid and myeloid cells
Andre A. Lighvani, David M. Frucht, Dragana Jankovic, Hidehiro Yamane, Julio Aliberti, Bruce D. Hissong, Bai V. Nguyen, Massimo Gadina, Alan Sher, William E. Paul, and John J. O'Shea
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15137–15142. doi: 10.1073/pnas.261570598.
PMCID: PMC64996
Circulating thioredoxin suppresses lipopolysaccharide-induced neutrophil chemotaxis
Hajime Nakamura, Leonore A. Herzenberg, Jie Bai, Shinichi Araya, Norihiko Kondo, Yumiko Nishinaka, Leonard A. Herzenberg, and Junji Yodoi
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15143–15148. Published online 2001 December 11. doi: 10.1073/pnas.191498798.
PMCID: PMC64997
Medical Sciences
Multiclass cancer diagnosis using tumor gene expression signatures
Sridhar Ramaswamy, Pablo Tamayo, Ryan Rifkin, Sayan Mukherjee, Chen-Hsiang Yeang, Michael Angelo, Christine Ladd, Michael Reich, Eva Latulippe, Jill P. Mesirov, Tomaso Poggio, William Gerald, Massimo Loda, Eric S. Lander, and Todd R. Golub
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15149–15154. Published online 2001 December 11. doi: 10.1073/pnas.211566398.
PMCID: PMC64998
Combination bacteriolytic therapy for the treatment of experimental tumors
Long H. Dang, Chetan Bettegowda, David L. Huso, Kenneth W. Kinzler, and Bert Vogelstein
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15155–15160. Published online 2001 November 27. doi: 10.1073/pnas.251543698.
PMCID: PMC64999
Short-cycle structured intermittent treatment of chronic HIV infection with highly active antiretroviral therapy: Effects on virologic, immunologic, and toxicity parameters
Mark Dybul, Tae-Wook Chun, Christian Yoder, Bertha Hidalgo, Michael Belson, Kurt Hertogs, Brendan Larder, Robin L. Dewar, Cecil H. Fox, Claire W. Hallahan, J. Shawn Justement, Stephen A. Migueles, Julia A. Metcalf, Richard T. Davey, Marybeth Daucher, Punita Pandya, Michael Baseler, Douglas J. Ward, and Anthony S. Fauci
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15161–15166. Published online 2001 December 4. doi: 10.1073/pnas.261568398.
PMCID: PMC65000
Quantification of intrinsic residual viral replication in treated HIV-infected patients
Christophe Fraser, Neil M. Ferguson, and Roy M. Anderson
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15167–15172. Published online 2001 December 11. doi: 10.1073/pnas.261283598.
PMCID: PMC65001
Vaccination with a Nogo-A-derived peptide after incomplete spinal-cord injury promotes recovery via a T-cell-mediated neuroprotective response: Comparison with other myelin antigens
Ehud Hauben, Antonio Ibarra, Tal Mizrahi, Rina Barouch, Eugenia Agranov, and Michal Schwartz
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15173–15178. doi: 10.1073/pnas.011585298.
PMCID: PMC65002
Histone deacetylase inhibitors reduce polyglutamine toxicity
Alexander McCampbell, Addis A. Taye, Leslie Whitty, Ellen Penney, Joan S. Steffan, and Kenneth H. Fischbeck
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15179–15184. Published online 2001 December 11. doi: 10.1073/pnas.261400698.
PMCID: PMC65003
From the Cover:
Delayed-onset ataxia in mice lacking α-tocopherol transfer protein: Model for neuronal degeneration caused by chronic oxidative stress
Takanori Yokota, Keiji Igarashi, Toshiki Uchihara, Kou-ichi Jishage, Hiroshi Tomita, Akira Inaba, Yi Li, Makoto Arita, Hiroshi Suzuki, Hidehiro Mizusawa, and Hiroyuki Arai
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15185–15190. doi: 10.1073/pnas.261456098.
PMCID: PMC65004
The coxsackievirus and adenovirus receptor is a transmembrane component of the tight junction
Christopher J. Cohen, Joseph T. C. Shieh, Raymond J. Pickles, Takatsugu Okegawa, Jer-Tsong Hsieh, and Jeffrey M. Bergelson
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15191–15196. Published online 2001 December 4. doi: 10.1073/pnas.261452898.
PMCID: PMC65005
Estrogen receptors and proliferation markers in primary and recurrent breast cancer
Elwood V. Jensen, Guojun Cheng, Carlo Palmieri, Shigehira Saji, Sari Mäkelä, Susan Van Noorden, Torsten Wahlström, Margaret Warner, R. Charles Coombes, and Jan-Åke Gustafsson
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15197–15202. Published online 2001 December 4. doi: 10.1073/pnas.211556298.
PMCID: PMC65006
Molecular characteristics of non-small cell lung cancer
Mariana Nacht, Tatiana Dracheva, Yuhong Gao, Takeshi Fujii, Yidong Chen, Audrey Player, Viatcheslav Akmaev, Brian Cook, Michael Dufault, Mindy Zhang, Wen Zhang, MingZhou Guo, John Curran, Sean Han, David Sidransky, Kenneth Buetow, Stephen L. Madden, and Jin Jen
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15203–15208. doi: 10.1073/pnas.261414598.
PMCID: PMC65007
Aberrant expression of homeobox gene HOXA7 is associated with müllerian-like differentiation of epithelial ovarian tumors and the generation of a specific autologous antibody response
Honami Naora, Fredrick J. Montz, Chee-Yin Chai, and Richard B. S. Roden
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15209–15214. Published online 2001 December 11. doi: 10.1073/pnas.011503998.
PMCID: PMC65008
Oxygen radical inhibition of nitric oxide-dependent vascular function in sickle cell disease
Mutay Aslan, Thomas M. Ryan, Brian Adler, Tim M. Townes, Dale A. Parks, J. Anthony Thompson, Albert Tousson, Mark T. Gladwin, Rakesh P. Patel, Margaret M. Tarpey, Ines Batinic-Haberle, C. Roger White, and Bruce A. Freeman
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15215–15220. doi: 10.1073/pnas.221292098.
PMCID: PMC65009
Powerful and prolonged protection of human retinal pigment epithelial cells, keratinocytes, and mouse leukemia cells against oxidative damage: The indirect antioxidant effects of sulforaphane
Xiangqun Gao, Albena T. Dinkova-Kostova, and Paul Talalay
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15221–15226. doi: 10.1073/pnas.261572998.
PMCID: PMC65010
Microbiology
The role of the third β strand in gp120 conformation and neutralization sensitivity of the HIV-1 primary isolate DH012
Chong-Bin Zhu, Lei Zhu, Sonia Holz-Smith, Thomas J. Matthews, and Chin Ho Chen
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15227–15232. Published online 2001 December 4. doi: 10.1073/pnas.261359098.
PMCID: PMC65011
Epstein–Barr virus nuclear antigen 1 activates transcription from episomal but not integrated DNA and does not alter lymphocyte growth
Myung-Soo Kang, Siu Chun Hung, and Elliott Kieff
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15233–15238. Published online 2001 December 4. doi: 10.1073/pnas.211556598.
PMCID: PMC65012
Efficient assembly of an HIV-1/MLV Gag-chimeric virus in murine cells
Benjamin K. Chen, Itay Rousso, Sung Shim, and Peter S. Kim
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15239–15244. Published online 2001 December 11. doi: 10.1073/pnas.261563198.
PMCID: PMC65013
From the Cover:
Cryptococcus neoformans interactions with amoebae suggest an explanation for its virulence and intracellular pathogenic strategy in macrophages
J. N. Steenbergen, H. A. Shuman, and A. Casadevall
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15245–15250. Published online 2001 December 11. doi: 10.1073/pnas.261418798.
PMCID: PMC65014
PAS-A domain of phosphorelay sensor kinase A: A catalytic ATP-binding domain involved in the initiation of development in Bacillus subtilis
Keith Stephenson and James A. Hoch
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15251–15256. Published online 2001 December 4. doi: 10.1073/pnas.251408398.
PMCID: PMC65015
Genetic control of manno(fructo)kinase activity in Escherichia coli
Andrew A. Sproul, Linda T. M. Lambourne, Jims Jean-Jacques D, and Hans L. Kornberg
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15257–15259. Published online 2001 December 11. doi: 10.1073/pnas.211569798.
PMCID: PMC65016
Evidence that the cell wall of Bacillus subtilis is protonated during respiration
H. G. Calamita, W. D. Ehringer, A. L. Koch, and R. J. Doyle
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15260–15263. doi: 10.1073/pnas.261483798.
PMCID: PMC65017
Epitope tagging of chromosomal genes in Salmonella
Sergio Uzzau, Nara Figueroa-Bossi, Salvatore Rubino, and Lionello Bossi
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15264–15269. Published online 2001 December 11. doi: 10.1073/pnas.261348198.
PMCID: PMC65018
Recombinant hepatitis E virus genomes infectious for primates: Importance of capping and discovery of a cis-reactive element
S. U. Emerson, M. Zhang, X.-J. Meng, H. Nguyen, M. St. Claire, S. Govindarajan, Y. K. Huang, and R. H. Purcell
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15270–15275. Published online 2001 December 11. doi: 10.1073/pnas.251555098.
PMCID: PMC65019
Neisseria gonorrhoeae PilV, a type IV pilus-associated protein essential to human epithelial cell adherence
Hanne C. Winther-Larsen, Finn Terje Hegge, Matthew Wolfgang, Stanley F. Hayes, Jos P. M. van Putten, and Michael Koomey
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15276–15281. doi: 10.1073/pnas.261574998.
PMCID: PMC65020
Neurobiology
Calcium influx selects the fast mode of endocytosis in the synaptic terminal of retinal bipolar cells
Guilherme Neves, Ana Gomis, and Leon Lagnado
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15282–15287. Published online 2001 December 4. doi: 10.1073/pnas.261311698.
PMCID: PMC65021
Doppel-induced cerebellar degeneration in transgenic mice
Richard C. Moore, Peter Mastrangelo, Essia Bouzamondo, Cornelia Heinrich, Giuseppe Legname, Stanley B. Prusiner, Leroy Hood, David Westaway, Stephen J. DeArmond, and Patrick Tremblay
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15288–15293. Published online 2001 December 4. doi: 10.1073/pnas.251550798.
PMCID: PMC65022
Different responses of astrocytes and neurons to nitric oxide: The role of glycolytically generated ATP in astrocyte protection
Angeles Almeida, Julia Almeida, Juan P. Bolaños, and Salvador Moncada
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15294–15299. Published online 2001 December 11. doi: 10.1073/pnas.261560998.
PMCID: PMC65023
A role for phospholipase D1 in neurotransmitter release
Yann Humeau, Nicolas Vitale, Sylvette Chasserot-Golaz, Jean-Luc Dupont, Guangwei Du, Michael A. Frohman, Marie-France Bader, and Bernard Poulain
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15300–15305. doi: 10.1073/pnas.261358698.
PMCID: PMC65024
Neuroglobin is up-regulated by and protects neurons from hypoxic-ischemic injury
Yunjuan Sun, Kunlin Jin, Xiao Ou Mao, Yonghua Zhu, and David A. Greenberg
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15306–15311. Published online 2001 December 11. doi: 10.1073/pnas.251466698.
PMCID: PMC65025
Hyperactivity, elevated dopaminergic transmission, and response to amphetamine in M1 muscarinic acetylcholine receptor-deficient mice
David J. Gerber, Tatyana D. Sotnikova, Raul R. Gainetdinov, Shu Ying Huang, Marc G. Caron, and Susumu Tonegawa
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15312–15317. doi: 10.1073/pnas.261583798.
PMCID: PMC65026
BID mediates neuronal cell death after oxygen/ glucose deprivation and focal cerebral ischemia
Nikolaus Plesnila, Sandra Zinkel, Dean A. Le, Sepideh Amin-Hanjani, Yonqin Wu, Jianhua Qiu, Alberto Chiarugi, Sunu S. Thomas, Daniel S. Kohane, Stanley J. Korsmeyer, and Michael A. Moskowitz
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15318–15323. Published online 2001 December 11. doi: 10.1073/pnas.261323298.
PMCID: PMC65027
Sulfhydryl modification of V449C in the glutamate transporter EAAT1 abolishes substrate transport but not the substrate-gated anion conductance
Rebecca P. Seal, Yasushi Shigeri, Scott Eliasof, Barbara H. Leighton, and Susan G. Amara
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15324–15329. doi: 10.1073/pnas.011400198.
PMCID: PMC65028
Thalamic bursting in rats during different awake behavioral states
Erika E. Fanselow, Koichi Sameshima, Luiz A. Baccala, and Miguel A. L. Nicolelis
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15330–15335. doi: 10.1073/pnas.261273898.
PMCID: PMC65029
A central neural circuit for experience-independent olfactory and courtship behavior in Drosophila melanogaster
Gertrud Heimbeck, Véronique Bugnon, Nanaë Gendre, Andreas Keller, and Reinhard F. Stocker
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15336–15341. Published online 2001 December 11. doi: 10.1073/pnas.011314898.
PMCID: PMC65030
Calmodulin priming: Nuclear translocation of a calmodulin complex and the memory of prior neuronal activity
Paul G. Mermelstein, Karl Deisseroth, Neela Dasgupta, Ann L. Isaksen, and Richard W. Tsien
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15342–15347. Published online 2001 December 11. doi: 10.1073/pnas.211563998.
PMCID: PMC65031
Role of the C-terminal domain in inactivation of brain and cardiac sodium channels
Massimo Mantegazza, Frank H. Yu, William A. Catterall, and Todd Scheuer
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15348–15353. Published online 2001 December 11. doi: 10.1073/pnas.211563298.
PMCID: PMC65032
Physiology
Alkalinization by chloride/bicarbonate pathway in larval mosquito midgut
Dmitri Y. Boudko, Leonid L. Moroz, William R. Harvey, and Paul J. Linser
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15354–15359. Published online 2001 December 11. doi: 10.1073/pnas.261253998.
PMCID: PMC65033
Plant Biology
Tetrahydrofolate biosynthesis in plants: Molecular and functional characterization of dihydrofolate synthetase and three isoforms of folylpolyglutamate synthetase in Arabidopsis thaliana
Stéphane Ravanel, Hélène Cherest, Samuel Jabrin, Didier Grunwald, Yolande Surdin-Kerjan, Roland Douce, and Fabrice Rébeillé
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15360–15365. doi: 10.1073/pnas.261585098.
PMCID: PMC65034
Medicago truncatula plants overexpressing the early nodulin gene enod40 exhibit accelerated mycorrhizal colonization and enhanced formation of arbuscules
Christian Staehelin, Celine Charon, Thomas Boller, Martin Crespi, and Ádám Kondorosi
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15366–15371. doi: 10.1073/pnas.251491698.
PMCID: PMC65035
Genetic analysis of Nicotiana pollen-part mutants is consistent with the presence of an S-ribonuclease inhibitor at the S locus
John F. Golz, Hae-Young Oh, Vanessa Su, Makoto Kusaba, and Ed Newbigin
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15372–15376. doi: 10.1073/pnas.261571598.
PMCID: PMC65036
A domain unique to plant RanGAP is responsible for its targeting to the plant nuclear rim
Annkatrin Rose and Iris Meier
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15377–15382. doi: 10.1073/pnas.261459698.
PMCID: PMC65037
Population Biology
Explaining mortality rate plateaus
Joshua S. Weitz and Hunter B. Fraser
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15383–15386. doi: 10.1073/pnas.261228098.
PMCID: PMC65038
Social Sciences
Psychology
Can race be erased? Coalitional computation and social categorization
Robert Kurzban, John Tooby, and Leda Cosmides
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15387–15392. Published online 2001 December 11. doi: 10.1073/pnas.251541498.
PMCID: PMC65039
Corrections
Correction
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15393.
PMCID: PMC64916
Corrects: Trissa Miller, et al. COMPASS: A complex of proteins associated with a trithorax-related SET domain protein. Proc Natl Acad Sci U S A. 2001 November 6; 98(23): 12902–12907.
Correction
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15393. Published online 2001 December 11.
PMCID: PMC64917
Corrects: Jing X. Kang, et al. Mannose-6-phosphate/insulin-like growth factor-II receptor is a receptor for retinoic acid. Proc Natl Acad Sci U S A. 1997 December 9; 94(25): 13671–13676.
Correction
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15393. Published online 2001 December 11.
PMCID: PMC64918
Corrects: Percy H. Carter, et al. Photochemically enhanced binding of small molecules to the tumor necrosis factor receptor-1 inhibits the binding of TNF-α. Proc Natl Acad Sci U S A. 2001 October 9; 98(21): 11879–11884.
Correction
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15393. Published online 2001 December 11.
PMCID: PMC64919
Corrects: Olimpia Meucci, et al. Expression of CX3CR1 chemokine receptors on neurons and their role in neuronal survival. Proc Natl Acad Sci U S A. 2000 July 5; 97(14): 8075–8080.
Correction
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15393. Published online 2001 December 11.
PMCID: PMC64920
Corrects: David R. Sherman, et al. Regulation of the Mycobacterium tuberculosis hypoxic response gene encoding α-crystallin. Proc Natl Acad Sci U S A. 2001 June 19; 98(13): 7534–7539.
Correction
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15393. Published online 2001 December 11.
PMCID: PMC64921
Corrects: Frédéric Knoflach, et al. Positive allosteric modulators of metabotropic glutamate 1 receptor: Characterization, mechanism of action, and binding site. Proc Natl Acad Sci U S A. 2001 November 6; 98(23): 13402–13407.
Correction
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15393. Published online 2001 December 11.
PMCID: PMC64922
Corrects: James M. Allan, et al. Polymorphism in glutathione S-transferase P1 is associated with susceptibility to chemotherapy-induced leukemia. Proc Natl Acad Sci U S A. 2001 September 25; 98(20): 11592–11597.
Correction
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15393. Published online 2001 December 11.
PMCID: PMC64923
Corrects: Gregory Pearce, et al. RALF, a 5-kDa ubiquitous polypeptide in plants, arrests root growth and development. Proc Natl Acad Sci U S A. 2001 October 23; 98(22): 12843–12847.
Correction
Proc Natl Acad Sci U S A. 2001 December 18; 98(26): 15393. Published online 2001 December 11.
PMCID: PMC64924
Corrects: Phillip Colella, et al. Numerical simulation of incompressible viscous flow in deforming domains. Proc Natl Acad Sci U S A. 1999 May 11; 96(10): 5378–5381.
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