| | This journal provides immediate access to some articles. In This Issue Proc Natl Acad Sci U S A. 2005 July 19; 102(29): 9991–9992. doi: 10.1073/iti2905102.PMCID: PMC1177430 Commentaries Helitrons contribute to the lack of gene colinearity observed in modern maize inbreds Shailesh K. Lal and L. Curtis Hannah PMCID: PMC1177426 Moving hand reveals dynamics of thought James S. Magnuson PMCID: PMC1177403 Shedding light on the dynamics of endocytosis and viral budding Gang Bao and X. Robert Bao PMCID: PMC1177411 Profile Profile of Stephen R. Carpenter Nick Zagorski PMCID: PMC1177424 Physical Sciences Applied Mathematics From the Cover:
Numerical simulation of a laboratory-scale turbulent V-flame J. B. Bell, M. S. Day, I. G. Shepherd, M. R. Johnson, R. K. Cheng, J. F. Grcar, V. E. Beckner, and M. J. Lijewski PMCID: PMC1177392 Applied Physical Sciences Restriction mapping in nanofluidic devices Robert Riehn, Manchun Lu, Yan-Mei Wang, Shuang Fang Lim, Edward C. Cox, and Robert H. Austin PMCID: PMC1172226 Chemistry Primary charge-recombination in an artificial photosynthetic reaction center Yasuhiro Kobori, Seigo Yamauchi, Kimio Akiyama, Shozo Tero-Kubota, Hiroshi Imahori, Shunichi Fukuzumi, and James R. Norris, Jr. PMCID: PMC1177418 Real-time measurement of dopamine fluctuations after cocaine in the brain of behaving rats Michael L. A. V. Heien, Amina S. Khan, Jennifer L. Ariansen, Joseph F. Cheer, Paul E. M. Phillips, Kate M. Wassum, and R. Mark Wightman PMCID: PMC1177422 A reversible molecular valve Thoi D. Nguyen, Hsian-Rong Tseng, Paul C. Celestre, Amar H. Flood, Yi Liu, J. Fraser Stoddart, and Jeffrey I. Zink PMCID: PMC1174922 Space- and time-resolved spectrophotometry in microsystems Nicolae Damean, Samuel K. Sia, Vincent Linder, Max Narovlyansky, and George M. Whitesides PMCID: PMC1177425 Physical limits to biochemical signaling William Bialek and Sima Setayeshgar PMCID: PMC1177398 Geology A uniquely preserved Ediacaran fossil with direct evidence for a quilted bodyplan Shuhai Xiao, Bing Shen, Chuanming Zhou, Guwei Xie, and Xunlai Yuan PMCID: PMC1177372 Physics One-dimensional hole gas in germanium/silicon nanowire heterostructures Wei Lu, Jie Xiang, Brian P. Timko, Yue Wu, and Charles M. Lieber PMCID: PMC1174925 Dynamic pattern evolution on scale-free networks Haijun Zhou and Reinhard Lipowsky PMCID: PMC1174918 Biological Sciences Eutrophication of aquatic ecosystems: Bistability and soil phosphorus Stephen R. Carpenter PMCID: PMC1177388 Physical limits to biochemical signaling William Bialek and Sima Setayeshgar PMCID: PMC1177398 Applied Biological Sciences DNA lesions induced by UV A1 and B radiation in human cells: Comparative analyses in the overall genome and in the p53 tumor suppressor gene Ahmad Besaratinia, Timothy W. Synold, Hsiu-Hua Chen, Cheng Chang, Bixin Xi, Arthur D. Riggs, and Gerd P. Pfeifer PMCID: PMC1174921 Biochemistry The chaperones MPP11 and Hsp70L1 form the mammalian ribosome-associated complex Hendrik Otto, Charlotte Conz, Philipp Maier, Tina Wölfle, Carolyn K. Suzuki, Paul Jenö, Peter Rücknagel, Joachim Stahl, and Sabine Rospert PMCID: PMC1177401 Modifying specific cysteines of the electrophile-sensing human Keap1 protein is insufficient to disrupt binding to the Nrf2 domain Neh2 Aimee L. Eggler, Guowen Liu, John M. Pezzuto, Richard B. van Breemen, and Andrew D. Mesecar PMCID: PMC1177374 Autoinhibition of Escherichia coli Rep monomer helicase activity by its 2B subdomain Katherine M. Brendza, Wei Cheng, Christopher J. Fischer, Marla A. Chesnik, Anita Niedziela-Majka, and Timothy M. Lohman PMCID: PMC1177377 Evolution of highly active enzymes by homology-independent recombination Karl E. Griswold, Yasuaki Kawarasaki, Nada Ghoneim, Stephen J. Benkovic, Brent L. Iverson, and George Georgiou PMCID: PMC1177412 Avicinylation (thioesterification): A protein modification that can regulate the response to oxidative and nitrosative stress Valsala Haridas, Sung-Oog Kim, Goshi Nishimura, Alfred Hausladen, Jonathan S. Stamler, and Jordan U. Gutterman PMCID: PMC1177405 ELL-associated factors 1 and 2 are positive regulators of RNA polymerase II elongation factor ELL Stephanie E. Kong, Charles A. S. Banks, Ali Shilatifard, Joan Weliky Conaway, and Ronald C. Conaway PMCID: PMC1177379 Ratcheting of the substrate from the zymogen to proteinase conformations directs the sequential cleavage of prothrombin by prothrombinase Elsa P. Bianchini, Steven J. Orcutt, Peter Panizzi, Paul E. Bock, and Sriram Krishnaswamy PMCID: PMC1174926 Rational design of aggregation-resistant bioactive peptides: Reengineering human calcitonin Susan B. Fowler, Stephen Poon, Roman Muff, Fabrizio Chiti, Christopher M. Dobson, and Jesús Zurdo PMCID: PMC1174920 From the Cover:
SyrB2 in syringomycin E biosynthesis is a nonheme FeII α-ketoglutarate- and O2-dependent halogenase Frédéric H. Vaillancourt, Jun Yin, and Christopher T. Walsh PMCID: PMC1177402 Visualizing inducible nitric-oxide synthase in living cells with a heme-binding fluorescent inhibitor Koustubh Panda, Mamta Chawla-Sarkar, Cecile Santos, Thomas Koeck, Serpil C. Erzurum, John F. Parkinson, and Dennis J. Stuehr PMCID: PMC1177357 Identification of mammalian arginyltransferases that modify a specific subset of protein substrates Reena Rai and Anna Kashina PMCID: PMC1173364 Histones are required for transcription of yeast rRNA genes by RNA polymerase I Prasad Tongaonkar, Sarah L. French, Melanie L. Oakes, Loan Vu, David A. Schneider, Ann L. Beyer, and Masayasu Nomura PMCID: PMC1177414 Biophysics Molecular architecture and assembly mechanism of Drosophila tripeptidyl peptidase II Beate Rockel, Jürgen Peters, Shirley A. Müller, Gönül Seyit, Philippe Ringler, Reiner Hegerl, Robert M. Glaeser, and Wolfgang Baumeister PMCID: PMC1177415 Balancing energy and entropy: A minimalist model for the characterization of protein folding landscapes Payel Das, Silvina Matysiak, and Cecilia Clementi PMCID: PMC1177359 Prediction of water and metal binding sites and their affinities by using the Fold-X force field Joost W. H. Schymkowitz, Frederic Rousseau, Ivo C. Martins, Jesper Ferkinghoff-Borg, Francois Stricher, and Luis Serrano PMCID: PMC1177371 Computational prediction of native protein ligand-binding and enzyme active site sequences Raj Chakrabarti, Alexander M. Klibanov, and Richard A. Friesner PMCID: PMC1177389 Single-cell Raman and fluorescence microscopy reveal the association of lipid bodies with phagosomes in leukocytes Henk-Jan van Manen, Yvonne M. Kraan, Dirk Roos, and Cees Otto PMCID: PMC1177376 Strain-specific morphologies of yeast prion amyloid fibrils Ruben Diaz-Avalos, Chih-Yen King, Joseph Wall, Martha Simon, and Donald L. D. Caspar PMCID: PMC1177419 Φ values in protein-folding kinetics have energetic and structural components Claudia Merlo, Ken A. Dill, and Thomas R. Weikl PMCID: PMC1177393 Structural specificity conferred by a group I RNA peripheral element Travis H. Johnson, Pilar Tijerina, Amanda B. Chadee, Daniel Herschlag, and Rick Russell PMCID: PMC1177367 Cell Biology Hepatic to pancreatic switch defines a role for hemostatic factors in cellular plasticity in mice Kumar Shanmukhappa, Reena Mourya, Gregg E. Sabla, Jay L. Degen, and Jorge A. Bezerra PMCID: PMC1177369 The C-terminal lysines fine-tune P53 stress responses in a mouse model but are not required for stability control or transactivation Kurt A. Krummel, Crystal J. Lee, Franck Toledo, and Geoffrey M. Wahl PMCID: PMC1177381 Common pathways in circadian and cell cycle clocks: Light-dependent activation of Fos/AP-1 in zebrafish controls CRY-1a and WEE-1 Jun Hirayama, Luca Cardone, Masao Doi, and Paolo Sassone-Corsi PMCID: PMC1177375 Human ISG15 conjugation targets both IFN-induced and constitutively expressed proteins functioning in diverse cellular pathways Chen Zhao, Carilee Denison, Jon M. Huibregtse, Steven Gygi, and Robert M. Krug PMCID: PMC1177427 The structure of the 80S ribosome from Trypanosoma cruzi reveals unique rRNA components Haixiao Gao, Maximiliano Juri Ayub, Mariano J. Levin, and Joachim Frank PMCID: PMC1174928 Developmental Biology Activation of hypoxia-inducible factors in hyperoxia through prolyl 4-hydroxylase blockade in cells and explants of primate lung Tiina M. Asikainen, Barbara K. Schneider, Nahid S. Waleh, Ronald I. Clyman, Wen-Bin Ho, Lee A. Flippin, Volkmar Günzler, and Carl W. White PMCID: PMC1177409 Environmental Sciences Human-induced dwarfing of Himalayan snow lotus, Saussurea laniceps (Asteraceae) Wayne Law and Jan Salick PMCID: PMC1177378 Evolution Evolution through genetically controlled allometry space Nicolas B. Langlade, Xianzhong Feng, Tracy Dransfield, Lucy Copsey, Andrew I. Hanna, Christophe Thébaud, Andrew Bangham, Andrew Hudson, and Enrico Coen PMCID: PMC1177394 A uniquely preserved Ediacaran fossil with direct evidence for a quilted bodyplan Shuhai Xiao, Bing Shen, Chuanming Zhou, Guwei Xie, and Xunlai Yuan PMCID: PMC1177372 The cost of replication fidelity in an RNA virus Victoria Furió, Andrés Moya, and Rafael Sanjuán PMCID: PMC1177365 Genetics Modulation of epithelial neoplasia and lymphoid hyperplasia in PTEN+/- mice by the p85 regulatory subunits of phosphoinositide 3-kinase Ji Luo, Cassandra L. Sobkiw, Nicole M. Logsdon, John M. Watt, Sabina Signoretti, Fionnuala O'Connell, Eyoung Shin, Youngju Shim, Lily Pao, Benjamin G. Neel, Ronald A. DePinho, Massimo Loda, and Lewis C. Cantley PMCID: PMC1174923 Genetic interactions between [PSI+] and nonstop mRNA decay affect phenotypic variation Marenda A. Wilson, Stacie Meaux, Roy Parker, and Ambro van Hoof PMCID: PMC1173365 Genomic imprinting recapitulated in the human β-globin locus Keiji Tanimoto, Motoshi Shimotsuma, Hitomi Matsuzaki, Akane Omori, Jörg Bungert, James Douglas Engel, and Akiyoshi Fukamizu PMCID: PMC1177360 An increase in telomere sister chromatid exchange in murine embryonic stem cells possessing critically shortened telomeres Yisong Wang, Natalie Erdmann, Richard J. Giannone, Jun Wu, Marla Gomez, and Yie Liu PMCID: PMC1177420 cAMP-response element-binding protein and heat-shock protein 70 additively suppress polyglutamine-mediated toxicity in Drosophila Kanae Iijima-Ando, Priscilla Wu, Eric A. Drier, Koichi Iijima, and Jerry C. P. Yin PMCID: PMC1177387 Immunology Inhibition of IFN-α signaling by a PKC- and protein tyrosine phosphatase SHP-2-dependent pathway Zhimei Du, Yuhong Shen, Wentian Yang, Ingrid Mecklenbrauker, Benjamin G. Neel, and Lionel B. Ivashkiv PMCID: PMC1177356 An N-glucosylated peptide detecting disease-specific autoantibodies, biomarkers of multiple sclerosis Francesco Lolli, Barbara Mulinacci, Alfonso Carotenuto, Bruno Bonetti, Giuseppina Sabatino, Benedetta Mazzanti, Anna Maria D'Ursi, Ettore Novellino, Marta Pazzagli, Laura Lovato, Maria C. Alcaro, Elisa Peroni, Maria C. Pozo-Carrero, Francesca Nuti, Luca Battistini, Giovanna Borsellino, Mario Chelli, Paolo Rovero, and Anna Maria Papini PMCID: PMC1177382 Structure of the ectodomain of Drosophila peptidoglycan-recognition protein LCa suggests a molecular mechanism for pattern recognition Chung-I Chang, Kentaro Ihara, Yogarany Chelliah, Dominique Mengin-Lecreulx, Soichi Wakatsuki, and Johann Deisenhofer PMCID: PMC1174924 Suppression of myasthenogenic responses of a T cell line by a dual altered peptide ligand by induction of CD4+CD25+ regulatory cells Badiga Venkata Aruna, Michael Sela, and Edna Mozes PMCID: PMC1177416 Medical Sciences Blocking protein farnesyltransferase improves nuclear blebbing in mouse fibroblasts with a targeted Hutchinson–Gilford progeria syndrome mutation Shao H. Yang, Martin O. Bergo, Julia I. Toth, Xin Qiao, Yan Hu, Salemiz Sandoval, Margarita Meta, Pravin Bendale, Michael H. Gelb, Stephen G. Young, and Loren G. Fong PMCID: PMC1174929 Selective thyroid receptor modulation by GC-1 reduces serum lipids and stimulates steps of reverse cholesterol transport in euthyroid mice Lisen Johansson, Mats Rudling, Thomas S. Scanlan, Thomas Lundåsen, Paul Webb, John Baxter, Bo Angelin, and Paolo Parini PMCID: PMC1177400 Neuronal calcium sensor-1 potentiates glucose-dependent exocytosis in pancreatic β cells through activation of phosphatidylinositol 4-kinase β Jesper Gromada, Christina Bark, Kamille Smidt, Alexander M. Efanov, Juliette Janson, Slavena A. Mandic, Dominic-Luc Webb, Wei Zhang, Björn Meister, Andreas Jeromin, and Per-Olof Berggren PMCID: PMC1177407 Valproate activates bovine leukemia virus gene expression, triggers apoptosis, and induces leukemia/lymphoma regression in vivo Amine Achachi, Arnaud Florins, Nicolas Gillet, Christophe Debacq, Patrice Urbain, Germain Manfouo Foutsop, Fabian Vandermeers, Agnieszka Jasik, Michal Reichert, Pierre Kerkhofs, Laurence Lagneaux, Arsène Burny, Richard Kettmann, and Luc Willems PMCID: PMC1177395 WNK1 activates SGK1 to regulate the epithelial sodium channel Bing-e Xu, Steve Stippec, Po-Yin Chu, Ahmed Lazrak, Xin-Ji Li, Byung-Hoon Lee, Jessie M. English, Bernardo Ortega, Chou-Long Huang, and Melanie H. Cobb PMCID: PMC1177404 Microbiology From the Cover:
Enhanced antiinflammatory capacity of a Lactobacillus plantarum mutant synthesizing modified teichoic acids Corinne Grangette, Sophie Nutten, Emmanuelle Palumbo, Siegfried Morath, Corinna Hermann, Joelle Dewulf, Bruno Pot, Thomas Hartung, Pascal Hols, and Annick Mercenier PMCID: PMC1177390 Replication and packaging of Norwalk virus RNA in cultured mammalian cells Miyuki Asanaka, Robert L. Atmar, Vivian Ruvolo, Sue E. Crawford, Frederick H. Neill, and Mary K. Estes PMCID: PMC1177355 Neuroscience Synaptic mechanisms of persistent reverberatory activity in neuronal networks Pak-Ming Lau and Guo-Qiang Bi PMCID: PMC1177363 Intrinsically photosensitive retinal ganglion cells detect light with a vitamin A-based photopigment, melanopsin Yingbin Fu, Haining Zhong, Min-Hua H. Wang, Dong-Gen Luo, Hsi-Wen Liao, Hidetaka Maeda, Samer Hattar, Laura J. Frishman, and King-Wai Yau PMCID: PMC1177370 Parkin negatively regulates JNK pathway in the dopaminergic neurons of Drosophila Guang-Ho Cha, Sunhong Kim, Jeehye Park, Eunji Lee, Myungjin Kim, Sung Bae Lee, Jin Man Kim, Jongkyeong Chung, and Kyoung Sang Cho PMCID: PMC1177361 Altered axonal architecture by removal of the heavily phosphorylated neurofilament tail domains strongly slows superoxide dismutase 1 mutant-mediated ALS Christian S. Lobsiger, Michael L. Garcia, Christopher M. Ward, and Don W. Cleveland PMCID: PMC1177385 Adult mouse brain gene expression patterns bear an embryologic imprint Matthew A. Zapala, Iiris Hovatta, Julie A. Ellison, Lisa Wodicka, Jo A. Del Rio, Richard Tennant, Wendy Tynan, Ron S. Broide, Rob Helton, Barbara S. Stoveken, Christopher Winrow, Daniel J. Lockhart, John F. Reilly, Warren G. Young, Floyd E. Bloom, David J. Lockhart, and Carrolee Barlow PMCID: PMC1173363 Physiology From the Cover:
Complex-periodic spiral waves in confluent cardiac cell cultures induced by localized inhomogeneities Seong-min Hwang, Tae Yun Kim, and Kyoung J. Lee PMCID: PMC1177368 Plant Biology SrSymRK, a plant receptor essential for symbiosome formation Ward Capoen, Sofie Goormachtig, Riet De Rycke, Katrien Schroeyers, and Marcelle Holsters PMCID: PMC1177396 Formation of organelle-like N2-fixing symbiosomes in legume root nodules is controlled by DMI2 Erik Limpens, Rossana Mirabella, Elena Fedorova, Carolien Franken, Henk Franssen, Ton Bisseling, and René Geurts PMCID: PMC1177397 MicroRNA-binding viral protein interferes with Arabidopsis development Padmanabhan Chellappan, Ramachandran Vanitharani, and Claude M. Fauquet PMCID: PMC1177406 LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms Samuel P. Hazen, Thomas F. Schultz, Jose L. Pruneda-Paz, Justin O. Borevitz, Joseph R. Ecker, and Steve A. Kay PMCID: PMC1177380 Social Sciences Psychology From the Cover:
Continuous attraction toward phonological competitors Michael J. Spivey, Marc Grosjean, and Günther Knoblich PMCID: PMC1177386 Social Sciences Operational effectiveness of suicide-bomber-detector schemes: A best-case analysis Edward H. Kaplan and Moshe Kress PMCID: PMC1177362 Corrections Proc Natl Acad Sci U S A. 2005 July 19; 102(29): 10405. Published online 2005 July 8. doi: 10.1073/pnas.0505010102.PMCID: PMC1177428 Corrects: Takatsugu Kobayashi, et al. Structural basis of nonnatural amino acid recognition by an engineered aminoacyl-tRNA synthetase for genetic code expansion. Proc Natl Acad Sci U S A. 2005 February 1; 102(5): 1366–1371. Proc Natl Acad Sci U S A. 2005 July 19; 102(29): 10405. Published online 2005 July 8. doi: 10.1073/pnas.0505194102.PMCID: PMC1177429 Corrects: Vamsi K. Mootha, et al. Errα and Gabpa/b specify PGC-1α-dependent oxidative phosphorylation gene expression that is altered in diabetic muscle. Proc Natl Acad Sci U S A. 2004 April 27; 101(17): 6570–6575. |
